Changes in tolerance to herbicide toxicity throughout development stages of phototrophic biofilms

Ecotoxicological experiments have been performed in laboratory-scale microcosms to investigate thesensitivity of phototrophic biofilm communities to the alachlor herbicide, in relation to the stages ofphototrophic biofilm maturation (age of the phototrophic biofilms) and physical structure (intact biofilmversus recolonization). The phototrophic biofilms were initially cultivated on artificial supports in aprototype rotating annular bioreactor (RAB) with Taylor–Couette type flow under constant operatingconditions. Biofilms were collected after 1.6 and 4.4 weeks of culture providing biofilms with differentmaturation levels, and then exposed to nominal initial alachlor concentration of 10 ug L−1in either intactor recolonized biofilms for 15 days in microcosms (mean time-weighted average concentration – TWACof 5.52 ± 0.74 ug L−1).At the end of the exposure period, alachlor effects were monitored by a combination of biomass descrip-tors (ash-free dry mass – AFDM, chlorophyll a), structural molecular fingerprinting (T-RFLP), carbonutilization spectra (Biolog) and diatom species composition. We found significant effects that in terms ofAFDM, alachlor inhibited growth of the intact phototrophic biofilms. No effect of alachlor was observedon diatom composition or functional and structural properties of the bacterial community regardless ofwhether they were intact or recolonized. The intact three-dimensional structure of the biofilm did notappear to confer protection from the effects of alachlor. Bacterial community structure and biomass levelof 4.4 weeks – intact phototrophic biofilms were significantly influenced by the biofilm maturation pro-cesses rather than alachlor exposure. The diatom communities which were largely composed of mobileand colonizer life-form populations were not affected by alachlor.This study showed that the effect of alachlor (at initial concentration of 10 ug L−1or mean TWAC of5.52 ± 0.74 ug L−1) is mainly limited to biomass reduction without apparent changes in the ecologicalsuccession trajectories of bacterial and diatom communities and suggested that carbon utilization spec-tra of the biofilm are not damaged resulting. These results confirmed the importance of consideringthe influence of maturation processes or community age when investigating herbicide effects. This isparticularly important with regard to the use of phototrophic biofilms as bio-indicators

Statistical Analysis When the Data is an Image: Eliciting Student Thinking About Sampling and Variability

Within statistics education, there is a growing interest in understanding students\u27 application of understanding about variability and sampling given the relative lack of research in either area (Shaughnessy, 2007). The task examined in this paper elicited students\u27 knowledge of these concepts within a small-group problem solving task completed by teams of first-year engineering students. In the Nanoroughness task, teams of students designed a procedure for quantifying the roughness of a material surface using digital images generated by atomic force microscopy. The procedure required students to apply statistical methods in order to aggregate the data. The focus of this article is the subsequent analysis of the responses to the task and the questions raised by that analysis. The Nanoroughness task is unique but critical as a statistical modeling task for two reasons. First, the students needed to use statistical measures to develop a measure that would describe a qualitative characteristic (roughness) without any prompting as to what statistical procedures were relevant. There are different ways to conceptualize roughness of a surface. Sandpaper’s roughness depends on the grain size of the sand. A road may be rough if it has randomly occurring large holes but smoother if the bumps are evenly distributed. The challenge in developing quantitative measures to define qualitative characteristics is that different quantitative analyses emphasize different variables and the students needed to both analyze and apply statistical procedures relevant to the context. For instance, determining which member of a set is the most rough or the least rough will depend on what measurements were selected, and how those measures were analyzed. The second unique characteristic of the task is that the students also needed to define a sampling procedure for an image that would facilitate quantifying the variability in the surface portrayed in the digital image. Usually when students need to take measurements of a population, the population is a discrete set of objects. In this case, the data set was a continuous surface. From the data set, the students need to determine the relevant population (e.g., every point on the surface, every peak on the surface, peaks and valleys). Such continuous populations are not unique within engineering and the sciences and occur in a variety of contexts where characteristics need to be measured and operationally defined. The task was implemented in a first-year engineering course that served as an introduction to basic tools of engineering with an emphasis on MatLab® and Excel® as technological tools. The Nanoroughness task was used in the course to introduce students to the real work of engineers who must not only calculate statistics but also analyze and interpret the results. Our research asked a two-part question. First, what is the quality of student responses to the Nanoroughness task? To answer this we looked at the viability of the model they had created and how well they had explained their procedure for comparing the roughness of images. Second, what statistical models were elicited by the task? We specifically looked at the sampling methods students used and then how the students analyzed the data set they had created. In this paper, we describe the quantitative and qualitative analyses we completed of a sample of student responses

Bacterial diversity of autotrophic enriched cultures from remote, glacial Antarctic, Alpine and Andean aerosol, snow and soil samples

International audienceFour different communities and one culture of autotrophic microbial assemblages were obtained by incubation of samples collected from high elevation snow in the Alps (Mt. Blanc area) and the Andes (Nevado Illimani summit, Bolivia), from Antarctic aerosol (French station Dumont d'Urville) and a maritime Antarctic soil (King George Island, South Shetlands, Uruguay Station Artigas), in a minimal mineral (oligotrophic) media. Molecular analysis of more than 200 16S rRNA gene sequences showed that all cultured cells belong to the Bacteria domain. Phylogenetic comparison with the currently available rDNA database allowed sequences belonging to Proteobacteria (Alpha-, Betaand Gamma-proteobacteria) , Actinobacteria and Bacteroidetes phyla to be identified. The Andes snow culture was the richest in bacterial diversity (eight microorganisms identified) and the marine Antarctic soil the poorest (only one). Snow samples from Col du Midi (Alps) and the Andes shared the highest number of identified microorganisms (Agrobacterium, Limnobacter, Aquiflexus and two uncultured Alphaproteobacteria clones). These two sampling sites also shared four sequences with the Antarctic aerosol sample (Limnobacter, Pseudonocardia and an uncultured Alphaproteobacteria clone). The only microorganism identified in the Antarctica soil (Brevundimonas sp.) was also detected in the Antarctic aerosol. Most of the identified microorganisms had been detected previously in cold environments, marine sediments soils and rocks. Air current dispersal is the best model to explain the presence of very specific microorganisms, like those identified in this work, in environments very distant and very different from each other

Linking Antarctic glaciochemical records to past climate conditions (scientific paper)

Deep Antarctic ice cores document the former states of the climatic system, the atmosphere, and the marine and terrestrial biospheres. However, questions do remain in the interpretation and the reliability of ice core chemical profiles in terms of atmospheric information. Data from the Dome C, Vostok, Dome F, and EPICA deep ice cores are used and compared in the discussions. First of all, the transfer functions of various gaseous and particulate compounds are not entirely understood and in the case of acid gases, strong post-deposition effects are observed at central Antarctic sites. It is emphasised that marine primary and secondary aerosol species may strongly interact during their long-range transport. Continental aerosol is important for the Antarctic impurity budget only in glacial environmental conditions. Its composition, as derived from Antarctic ice core glaciochemistry is discussed. As for the case of marine aerosol, the reaction of primary and gas-derived aerosol has to be considered. Finally, the possible impact of continental dust on marine biogenic activity shortly is discussed in the light of glaciochemical results

A Comparison Of New Calculations Of The Yearly 10Be Production In The Earths Polar Atmosphere By Cosmic Rays With Yearly 10Be Measurements In Multiple Greenland Ice Cores Between 1939 And 1994 - A Troubling Lack Of Concordance Paper #2

We have compared the yearly production rates of 10Be by cosmic rays in the Earths polar atmosphere over the last 50-70 years with 10Be measurements from two separate ice cores in Greenland. These ice cores provide measurements of the annual 10Be concentration and 10Be flux levels during this time. The scatter in the ice core yearly data vs. the production data is larger than the average solar 11 year production variations that are being measured. The cross correlation coefficients between the yearly 10Be production and the ice core 10Be measurements for this time period are <0.4 in all comparisons between ice core data and 10Be production, including 10Be concentrations, 10Be fluxes and in comparing the two separate ice core measurements. In fact, the cross correlation between the two ice core measurements, which should be measuring the same source, is the lowest of all, only ~0.2. These values for the correlation coefficient are all indicative of a "poor" correlation. The regression line slopes for the best fit lines between the 10Be production and the 10Be measurements used in the cross correlation analysis are all in the range 0.4-0.6. This is a particular problem for historical projections of solar activity based on ice core measurements which assume a 1:1 correspondence. We have made other tests of the correspondence between the 10Be predictions and the ice core measurements which lead to the same conclusion, namely that other influences on the ice core measurements, as large as or larger than the production changes themselves, are occurring. These influences could be climatic or instrumentally based. We suggest new ice core measurements that might help in defining more clearly what these influences are and-if possible-to correct for them.Comment: 24 pages, 6 figure

Coordination by Cdc42 of actin, contractility, and adhesion for melanoblast movement in mouse skin

YesThe individual molecular pathways downstream of Cdc42, Rac, and Rho GTPases are well documented, but we know surprisingly little about how these pathways are coordinated when cells move in a complex environment in vivo. In the developing embryo, melanoblasts originating from the neural crest must traverse the dermis to reach the epidermis of the skin and hair follicles. We previously established that Rac1 signals via Scar/WAVE and Arp2/3 to effect pseudopod extension and migration of melanoblasts in skin. Here we show that RhoA is redundant in the melanocyte lineage but that Cdc42 coordinates multiple motility systems independent of Rac1. Similar to Rac1 knockouts, Cdc42 null mice displayed a severe loss of pigmentation, and melanoblasts showed cell-cycle progression, migration, and cytokinesis defects. However, unlike Rac1 knockouts, Cdc42 null melanoblasts were elongated and displayed large, bulky pseudopods with dynamic actin bursts. Despite assuming an elongated shape usually associated with fast mesenchymal motility, Cdc42 knockout melanoblasts migrated slowly and inefficiently in the epidermis, with nearly static pseudopods. Although much of the basic actin machinery was intact, Cdc42 null cells lacked the ability to polarize their Golgi and coordinate motility systems for efficient movement. Loss of Cdc42 de-coupled three main systems: actin assembly via the formin FMNL2 and Arp2/3, active myosin-II localization, and integrin-based adhesion dynamics.Cancer Research UK (to L.M.M. [A17196], R.H.I. [A19257], and S.W.G.T.) and NIH grants P01-GM103723 and P41-EB002025 (to K.M.H.). N.R.P. is supported by a Pancreatic Cancer Research Fund grant (to L.M.M.). Funding to Prof. Rottner by the Deutsche Forschungsgemeinschaft (grant RO2414/3-2)

GLI2-Mediated Melanoma Invasion and Metastasis

Background The transforming growth factor-β (TGF-β) pathway, which has both tumor suppressor and pro-oncogenic activities, is often constitutively active in melanoma and is a marker of poor prognosis. Recently, we identified GLI2, a mediator of the hedgehog pathway, as a transcriptional target of TGF-β signaling. Methods We used real-time reverse transcription-polymerase chain reaction (RT-PCR) and western blotting to determine GLI2 expression in human melanoma cell lines and subsequently classified them as GLI2high or as GLI2low according to their relative GLI2 mRNA and protein expression levels. GLI2 expression was reduced in a GLI2high cell line with lentiviral expression of short hairpin RNA targeting GLI2. We assessed the role of GLI2 in melanoma cell invasiveness in Matrigel assays. We measured secretion of matrix metalloproteinase (MMP)-2 and MMP-9 by gelatin zymography and expression of E-cadherin by western blotting and RT-PCR. The role of GLI2 in development of bone metastases was determined following intracardiac injection of melanoma cells in immunocompromised mice (n = 5-13). Human melanoma samples (n = 79) at various stages of disease progression were analyzed for GLI2 and E-cadherin expression by immunohistochemistry, in situ hybridization, or RT-PCR. All statistical tests were two-sided. Results Among melanoma cell lines, increased GLI2 expression was associated with loss of E-cadherin expression and with increased capacity to invade Matrigel and to form bone metastases in mice (mean osteolytic tumor area: GLI2high vs GLI2low, 2.81 vs 0.93 mm2, difference = 1.88 mm2, 95% confidence interval [CI] = 1.16 to 2.60, P < .001). Reduction of GLI2 expression in melanoma cells that had expressed high levels of GLI2 substantially inhibited both basal and TGF-β-induced cell migration, invasion (mean number of Matrigel invading cells: shGLI2 vs shCtrl (control), 52.6 vs 100, difference = 47.4, 95% CI = 37.0 to 57.8, P = .024; for shGLI2 + TGF-β vs shCtrl + TGF-β, 31.0 vs 161.9, difference = −130.9, 95% CI = −96.2 to −165.5, P = .002), and MMP secretion in vitro and the development of experimental bone metastases in mice. Within human melanoma lesions, GLI2 expression was heterogeneous, associated with tumor regions in which E-cadherin was lost and increased in the most aggressive tumors. Conclusion GLI2 was directly involved in driving melanoma invasion and metastasis in this preclinical stud

The Global Longitudinal Study of Osteoporosis in Women (GLOW): rationale and study design

SUMMARY: The Global Longitudinal study of Osteoporosis in Women (GLOW) is a prospective cohort study involving 723 physicians and 60,393 women subjects \u3eor=55 years. The data will provide insights into the management of fracture risk in older women over 5 years, patient experience with prevention and treatment, and distribution of risk among older women on an international basis. INTRODUCTION: Data from cohort studies describing the distribution of osteoporosis-related fractures and risk factors are not directly comparable and do not compare regional differences in patterns of patient management and fracture outcomes. METHODS: The GLOW is a prospective, multinational, observational cohort study. Practices typical of each region were identified through primary care networks organized for administrative, research, or educational purposes. Noninstitutionalized patients visiting each practice within the previous 2 years were eligible. Self-administered questionnaires were mailed, with 2:1 oversampling of women \u3eor=65 years. Follow-up questionnaires will be sent at 12-month intervals for 5 years. RESULTS: A total of 723 physicians at 17 sites in ten countries agreed to participate. Baseline surveys were mailed (October 2006 to February 2008) to 140,416 subjects. After the exclusion of 3,265 women who were ineligible or had died, 60,393 agreed to participate. CONCLUSIONS: GLOW will provide contemporary information on patterns of management of fracture risk in older women over a 5-year period. The collection of data in a similar manner in ten countries will permit comparisons of patient experience with prevention and treatment and provide insights into the distribution of risk among older women on an international basis