Boolean Models of Bistable Biological Systems

This paper presents an algorithm for approximating certain types of dynamical systems given by a system of ordinary delay differential equations by a Boolean network model. Often Boolean models are much simpler to understand than complex differential equations models. The motivation for this work comes from mathematical systems biology. While Boolean mechanisms do not provide information about exact concentration rates or time scales, they are often sufficient to capture steady states and other key dynamics. Due to their intuitive nature, such models are very appealing to researchers in the life sciences. This paper is focused on dynamical systems that exhibit bistability and are desc ribedby delay equations. It is shown that if a certain motif including a feedback loop is present in the wiring diagram of the system, the Boolean model captures the bistability of molecular switches. The method is appl ied to two examples from biology, the lac operon and the phage lambda lysis/lysogeny switch

Evaluación física y clínica de sementales bovinos en dos municipios de la costa chica de Guerrero, México

Objective: To evaluate the reproductive physical characteristics and general health of stallions in two municipalities of Costa Chica of Guerrero, Mexico. Design/methodology/approach: The study was carried out in the municipalities of Ometepec and Cuajinicuilapa. Thirty bulls between 2 and 10 years of age were evaluated. In the physical reproductive and clinical examination were performed by direct observation, using ultrasound to evaluate attached reproductive glands and testicular parenchyma. Blood samples were taken to determine the blood profile. Descriptive statistics was used to present the results. Results: The 86% of the bulls had adequate legs and feet as well as preputial length. Scrotal circumference was according to the age and breed of the animals. Testicular defects were showed for 30% of the bulls, the most common was hypoplasia and unilateral tumors of testicular parenchyma and epididymis, as well as calcifications of the testicular parenchyma. The 93% of the bulls had normal accessory genital glands. Clinically 24% of the bulls with signs suggestive of anaplasmosis were found. The 76% of the bulls, apparently healthy, presented monocytosis, thrombocytopenia and anemia. Limitations on study/implications: the lack of knowledge of the producers about the need for a comprehensive evaluation of the bulls allows them to suffer from diseases without receiving any type of treatment, decreasing their reproductive efficiency. Findings/conclusions: Most of the bulls evaluated had the minimum physical characteristics required, although the presence of anemia and respiratory diseases may have an indirect negative impact on the reproductive efficiency of the bulls.Objetivo: Evaluar las características físicas reproductivas y la salud general de los sementales en dos municipios de Costa Chica de Guerrero, México. Diseño/metodología/aproximación: Se evaluaron reproductiva y clínicamente 30 sementales, de entre 2 y 10 años. El examen reproductivo, se realizó por observación directa, empleándose ecografía para evaluar glándulas reproductivas anexas y el parénquima testicular. La evaluación clínica se realizó por medio del examen físico y perfil hemático. Se empleó estadística descriptiva para la presentación de los resultados. Resultados: El 86% de los sementales tuvieron aplomos y largo prepucial adecuado, así como circunferencia escrotal acorde a la edad y raza de los animales. El 30% de los sementales presentaron defectos testiculares, siendo los más comunes, hipoplasia y tumores unilaterales de parénquima testicular y epidídimos, así como calcificaciones del parénquima testicular. El 93% de las glándulas anexas fueron normales. Clínicamente se encontró un 24% de los sementales con signos sugerentes a anaplasmosis. El 76% de los toros, aparentemente sanos, presentaron monocitosis, trombocitopenia y anemia. Limitaciones del estudio/implicaciones: El desconocimiento de los productores sobre la necesidad de una evaluación integral de los sementales permite que éstos padezcan enfermedades que no son tratadas, disminuyendo su eficiencia reproductiva. Hallazgos/conclusiones: La mayoría de los sementales evaluados tuvieron las características físicas mínimas requeridas, aunque la presencia de anemia y enfermedades respiratorias pueden tener incidencia negativa indirecta sobre la eficiencia reproductiva de los sementales

Chemical composition and in vitro degradations of pods and leaves of legumes trees of Mexican dry tropic

Las vainas y las hojas de leguminosas arbóreas se usan como suplemento alimenticio para disminuir las deficiencias de nitrógeno que presentan los pastos en el trópico seco. El objetivo fue caracterizar la composición química y las degradaciones in vitro de las vainas de Leucaena leucocephala, Enterolobium cyclocarpum, Samanea saman, Acacia cochliacantha, Guazuma ulmifolia y las hojas de L. leucocephala y G. ulmifolia. Se determinó el contenido de materia seca, proteína cruda (PC), cenizas, fibra detergente neutro (FDN), fibra detergente ácido (FDA), ácidos grasos volátiles, concentración de bacterias totales, degradación de materia seca (DEGMS) y degradación de fibra detergente neutro (DEGFDN). El análisis estadístico fue un diseño completamente al azar. La vaina de E. cyclocarpum (19.50 %), la vaina (19.83 %) y la hoja (21.57 %) de L. leucocephala tuvieron los mayores contenidos de PC. La vaina de E. cyclocarpum presentó 28.38 % de FDN. La hoja de L. leucocephala (24.22 %) y las vainas de S. saman (25.06 %) y E. cyclocarpum (20.40 %) presentaron los menores contenidos de FDA (P<0.05). Las vainas de E. cyclocarpum (73.06 y 38.68 %) y S. saman (66.01 y 35.86 %) cuantificaron las mayores (P<0.05) DEGMS y DEGFDN. Por tanto, las vainas de E. cyclocarpum y S. saman son una alternativa viable para la alimentación de rumiantes en el trópico seco dadas sus características químicas y fermentativas.Pods and leaves of legumes trees are used as feed supplements, these are used to diminish the deficiency of nitrogen present in pastures in the dry tropic. The objective was to characterize the chemical composition and the in vitro degradations of pods of Leucaena leucocephala, Enterolobium cyclocarpum, Samanea saman, Acacia cochliacantha, Guazuma ulmifolia and leaves of L. leucocephala and G. ulmifolia. Dry matter, crude protein (CP), neutral detergent fiber (NDF), acid detergent fiber (ADF), dry matter degradation (DMDEG), neutral detergent fiber degradation (NDFDEG), volatile fatty acids, ashes and total concentration of bacteria, were determined. The experimental design was completely randomized. The pod of E. cyclocarpum (19.50 %), the pods (19.83 %) and leaves (21.57 %) of L. Leucocephala had the highest content of CP. The E. cyclocarpum pod presented 28.38 % of NDF. The leaf of L. leucocephala (24.22 %) and the pods of S. saman (25.06 %) and E. cyclocarpum (20.40 %) had the lowest contents of ADF (P<0.05). E. cyclocarpum (73.06 and 38.68 %) and S. saman (66.01 and 35.86 %) pods quantified the highest DMDEG and NDFDEG (P<0.05). Therefore, the pods of E. cyclocarpum and S. saman are a viable alternative for feeding ruminants in the dry tropic given their chemical and fermentative characteristics

Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a–b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016

Evaluation of Blueberry Juice in Mouse Azoxymethane-Induced Aberrant Crypts and Oxidative Damage

Blueberry is a plant with a number of nutritional and biomedical capabilities. In the present study we initially evaluated the capacity of its juice (BJ) to inhibit the number of aberrant crypts (AC) induced with azoxymethane (AOM) in mouse. BJ was administered daily by the oral route to three groups of animals during four weeks (1.6, 4.1, and 15.0 μL/g), respectively, while AOM (10 mg/kg) was intraperitoneally injected to the mentioned groups, twice a week, in weeks two and three of the assay. We also included two control groups of mice, one administered distilled water and the other the high dose of BJ. A significant increase of AC was observed in the AOM treated animals, and a mean protection of 75.6% was determined with the two low doses of BJ tested; however, the high dose of the juice administered together with AOM increased the number of crypts more than four times the value observed in animals administered only AOM. Furthermore, we determined the antioxidant potential of BJ with an ex vivo DPPH assay and found a dose-dependent decrease with a mean of 19.5%. We also determined the DNA oxidation/antioxidation by identifying 8-hydroxy-2′-deoxyguanosine adducts and found a mean decrease of 44.3% with the BJ administration with respect to the level induced by AOM. Our results show a complex differential effect of BJ related to the tested doses, opening the need to further evaluate a number of factors so as to determine the possibility of a cocarcinogenic potential

Ag nanoparticles formed by femtosecond pulse laser ablation in water: self assembled fractal structures

We report for the first time on the formation of self-assembled fractals of spherical Ag nanoparticles (Nps) fabricated by femtosecond pulse laser ablation of a solid silver target in water. Fractal structures grew both in two and three Euclidean dimensions (d). Ramified-fractal assemblies of 2 nm height and 5–14 μm large, decorated with Ag Nps of 3 nm size, were obtained in a 2d geometry when highly diluted drops of colloidal suspension were dried at a fast heating rate over a mica substrate. When less-diluted drops were dried at slow heating rate, isolated single Nps or rosette-like structures were formed. Fractal aggregates about 31 nm size in 3d geometry were observed in the as-prepared colloidal suspension. Electron diffraction and optical extinction spectroscopy (OES) analyses performed on the samples confirmed the presence of Ag and Ag2O. The analysis of the optical extinction spectrum, using the electrostatic approximation of Mie theory for small spheres, showed the existence of Ag bare core, Ag–Ag2O and air–Ag core–shell Nps, Ag–Ag2O being the most frequent type [69 % relative abundance (r.a.)]. Core-size and shell-thickness distribution was derived from OES. In situ scattering measurements of the Ag colloidal suspension, carried out by small-angle X-ray scattering, indicate a mass fractal composed of packaged 〈DSAXS〉 = (5 ± 1) nm particles and fractal dimension df = 2.5. Ex situ atomic force microscopy imaging displayed well-ramified structures, which, analyzed with box-counting method, yield a fractal dimension df = 1.67. The growing behavior of these 2d and 3d self-assembled fractals is consistent with the diffusion-limited aggregation model.Fil: Santillán, Jesica María José. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Centro de Investigaciones Opticas (i); Argentina. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas; ArgentinaFil: Fernandez Van Raap, Marcela Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Física La Plata; Argentina. Universidad Nacional de la Plata. Facultad de Ciencias Exactas. Departamento de Física; ArgentinaFil: Mendoza Zélis, Pedro. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Física La Plata; Argentina. Universidad Nacional de La Plata. Facultad de Ingenieria; ArgentinaFil: Coral, Diego Fernando. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Instituto de Física La Plata; Argentina. Universidad Nacional de la Plata. Facultad de Ciencias Exactas. Departamento de Física; ArgentinaFil: Muraca, Diego. Universidade Estadual de Campinas; BrasilFil: Schinca, Daniel Carlos. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Centro de Investigaciones Opticas (i); Argentina. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas; Argentina. Universidad Nacional de La Plata. Facultad de Ingenieria; ArgentinaFil: Scaffardi, Lucia Beatriz. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico La Plata. Centro de Investigaciones Opticas (i); Argentina. Provincia de Buenos Aires. Gobernación. Comisión de Investigaciones Científicas; Argentina. Universidad Nacional de La Plata. Facultad de Ingenieria; Argentin