Biological synthesis of fluorescent nanoparticles by cadmium and tellurite resistant Antarctic bacteria: exploring novel natural nanofactories

Indexación: Web of ScienceBackground: Fluorescent nanoparticles or quantum dots (QDs) have been intensely studied for basic and applied research due to their unique size-dependent properties. There is an increasing interest in developing ecofriendly methods to synthesize these nanoparticles since they improve biocompatibility and avoid the generation of toxic byproducts. The use of biological systems, particularly prokaryotes, has emerged as a promising alternative. Recent studies indicate that QDs biosynthesis is related to factors such as cellular redox status and antioxidant defenses. Based on this, the mixture of extreme conditions of Antarctica would allow the development of natural QDs producing bacteria. Results: In this study we isolated and characterized cadmium and tellurite resistant Antarctic bacteria capable of synthesizing CdS and CdTe QDs when exposed to these oxidizing heavy metals. A time dependent change in fluorescence emission color, moving from green to red, was determined on bacterial cells exposed to metals. Biosynthesis was observed in cells grown at different temperatures and high metal concentrations. Electron microscopy analysis of treated cells revealed nanometric electron-dense elements and structures resembling membrane vesicles mostly associated to periplasmic space. Purified biosynthesized QDs displayed broad absorption and emission spectra characteristic of biogenic Cd nanoparticles. Conclusions: Our work presents a novel and simple biological approach to produce QDs at room temperature by using heavy metal resistant Antarctic bacteria, highlighting the unique properties of these microorganisms as potent natural producers of nano-scale materials and promising candidates for bioremediation purposes.http://microbialcellfactories.biomedcentral.com/articles/10.1186/s12934-016-0477-

Plasmon enhanced energy-transfer up-conversion in Yb3+-Er3+ co-doped LiNbO3 crystal

We have analyzed the effect of linear chains of metallic Ag nanoparticles on the optical properties of a periodically poled Yb 3+ -Er 3+ co-doped LiNbO 3 crystal. By exploiting the broad plasmonic response supported by linear chains of strongly coupled Ag nanoparticles, we demonstrate a 50% of enhancement of the up-converted Er 3+ emission under excitation in the f-f transition of Yb 3+ ions. The observed intensification is explained in terms of the broad plasmonic spectral response supported by the Ag chains, which overlaps both the Er 3+ visible emissions and the Yb 3+ absorption band, and the two-photon character of the Yb 3+ → Er 3+ energy-transfer up-conversion process. The results are of interest for applications involving luminescence up-conversion such as sensing, solar energy conversion, biological imaging or solid-state nanolasersThis work has been supported by the Spanish Ministry of Economy and Competitiveness (MINECO) under project MAT2013- 43301-R and Comunidad de Madrid under grant S2013/MIT-274

Spectral stability of noncharacteristic isentropic Navier-Stokes boundary layers

Building on work of Barker, Humpherys, Lafitte, Rudd, and Zumbrun in the shock wave case, we study stability of compressive, or "shock-like", boundary layers of the isentropic compressible Navier-Stokes equations with gamma-law pressure by a combination of asymptotic ODE estimates and numerical Evans function computations. Our results indicate stability for gamma in the interval [1, 3] for all compressive boundary-layers, independent of amplitude, save for inflow layers in the characteristic limit (not treated). Expansive inflow boundary-layers have been shown to be stable for all amplitudes by Matsumura and Nishihara using energy estimates. Besides the parameter of amplitude appearing in the shock case, the boundary-layer case features an additional parameter measuring displacement of the background profile, which greatly complicates the resulting case structure. Moreover, inflow boundary layers turn out to have quite delicate stability in both large-displacement and large-amplitude limits, necessitating the additional use of a mod-two stability index studied earlier by Serre and Zumbrun in order to decide stability

Downward pumping of magnetic flux as the cause of filamentary structures in sunspot penumbrae

The structure of a sunspot is determined by the local interaction between magnetic fields and convection near the Sun's surface. The dark central umbra is surrounded by a filamentary penumbra, whose complicated fine structure has only recently been revealed by high-resolution observations. The penumbral magnetic field has an intricate and unexpected interlocking-comb structure and some field lines, with associated outflows of gas, dive back down below the solar surface at the outer edge of the spot. These field lines might be expected to float quickly back to the surface because of magnetic buoyancy, but they remain submerged. Here we show that the field lines are kept submerged outside the spot by turbulent, compressible convection, which is dominated by strong, coherent, descending plumes. Moreover, this downward pumping of magnetic flux explains the origin of the interlocking-comb structure of the penumbral magnetic field, and the behaviour of other magnetic features near the sunspot

Sedimentary climatic record in the Galician Internal Basin: sediment provenance, transport time and hydrodynamics over the last 60.000 years

The sediments of the Galician Interior Basin are influenced by the Atlantic Meridional Overturning Circulation (AMOC) and by their proximity to the Western Iberia continental landmass, and thus provide an adequate archive to study the peculiarities of the last glacial‐interglacial dynamics and the transition into present day conditions. The aim of this study has been to analyse the sedimentary expression of climatic processes and forcings derived from the relation between the last North Atlantic glacial cycle and the local regional components -including abrupt climate changes and local events- since the end of the last glacial period in this area. We have attempted to establish the rates and magnitudes of change of this system to understand its climate dynamics, processes and feedbacks, and hence its role on a local to sub‐regional scale from a palaeoclimatic proxies perspective. The inference of these climatic mechanisms encrypted in the deep-sea sedimentary record needs to constrain the spatial and temporal scales of the sedimentary processes involved, in particular the identification of source areas, pathways and transport, storage times and hydrodynamic conditions. In order to achieve these goals we have used a twofold approach; an initial effort to constrain the current sedimentary conditions to their associated local hydrography conditions by means of a mooring, which will be used to later infer the palaeoenvironmental conditions from sediment cores. The location of the mooring and the 5 coring locations has been based on the acquisition of new geophysical data: a precise 20 x 20 m bathymetry covering an area of 9860 km2 and 690 km of high-resolution seismic profiles distributed in 10 transects that allow to investigate the main sedimentary units in the region. The mooring comprised 2 sediment traps located at 500 and 1400 m below the sea surface. These depths are under the influence of the Eastern North Atlantic Central Water (ENACW) and Mediterranean Water (MW). The sediment traps also target sediments from the shelf and the upper slope. Sediments were collected monthly for a 9 month period, whilst hydrographic conditions such as current speed, salinity, oxygen and turbidity were continuously recorded in associated instruments at the same depths. Finally, a multidisciplinary study combining resolution scans, including geochemistry (ITRAX), physical properties (GEOTEK) and enviromagnetic properties (2G cryogenic magnetometer), has been constrained using a very robust geochronology framework. Further analyses comprised grain size distributions, S͞S, SEM, XRD, stable and high-precision radioactive isotopes. The area consists mostly of generally autochthonous hemipelagic and terrigenous muds and sandy to silty muds with high clay content, showing abundant bioturbation and early diagenesis. Allochthonous material of different provenances (characterized by 143Nd/144Nd and 87Sr/ 86Sr isotopic ratios) occurs interbedded within the hemipelagic sediments associated to Heinrich Stadials HS1 to HS6. The sediments also show significant changes in the vigour of bottom-currents (based on the S͞S proxy) both within and between the HS. The combination of these sedimentological, geochemical and geophysical data has provided a new insight into the role of current strength, circulation and sediment provenance changes in the area, and allowed to establish across vs. along margin transport balances in the sedimentary record of the Galician Internal basin over the last 60 Ky

Nitrate pollution of groundwater, all right... but nothing else?

Contamination from agricultural sources and, in particular, nitrate pollution, is one of the main concerns in groundwater management. However, this type of pollution entails the entrance of other substances into the aquifer, as well as it may promote other processes. In this study, we deal with hydrochemical and isotopic analysis of groundwater samples from four distinct zones in Catalonia (NE Spain), which include different lithological units, to investigate the influence of manure fertilization on the overall hydrochemical composition of groundwater. Results indicate that high nitrate concentrations, resulting from intense manure application, homogenize the contents of the major dissolved ions (i.e.; Cl-, SO42-, Ca2+, Na+, K+, and Mg2+). Moreover, positive linear relationships between nitrate and some ions are found indicating the magnitude of the fertilization impact on groundwater hydrochemistry. Nevertheless, the increasing concentration of specific ions is not only attributed to the manure input, but to the enhancing effect of manure and slurry upon the biogeochemical processes that control water-rock interactions. Such results raise awareness that such processes should be evaluated in advance in order to assess adequate groundwater resources assessmen

Potential health impacts of heavy metals on HIV-infected population in USA.

Noninfectious comorbidities such as cardiovascular diseases have become increasingly prevalent and occur earlier in life in persons with HIV infection. Despite the emerging body of literature linking environmental exposures to chronic disease outcomes in the general population, the impacts of environmental exposures have received little attention in HIV-infected population. The aim of this study is to investigate whether individuals living with HIV have elevated prevalence of heavy metals compared to non-HIV infected individuals in United States. We used the National Health and Nutrition Examination Survey (NHANES) 2003-2010 to compare exposures to heavy metals including cadmium, lead, and total mercury in HIV infected and non-HIV infected subjects. In this cross-sectional study, we found that HIV-infected individuals had higher concentrations of all heavy metals than the non-HIV infected group. In a multivariate linear regression model, HIV status was significantly associated with increased blood cadmium (p=0.03) after adjusting for age, sex, race, education, poverty income ratio, and smoking. However, HIV status was not statistically associated with lead or mercury levels after adjusting for the same covariates. Our findings suggest that HIV-infected patients might be significantly more exposed to cadmium compared to non-HIV infected individuals which could contribute to higher prevalence of chronic diseases among HIV-infected subjects. Further research is warranted to identify sources of exposure and to understand more about specific health outcomes

Recurs multimedia del treball de camp en geologia

El portal Geocamp s'ha creat per aplicar-lo al procés d'aprenentatge de la Geologia al camp, enllaçant conceptes teòrics amb metodologia de treball fora de l'aula o el laboratori. S'adreça a docents i estudiants d'universitat, secundària, batxillerat, formació de professorat o públic en general. Aquest portal conté materials didàctics propis i enllaços amb tot tipus d'informacions relatives al treball de camp en Ciències de la Terra. L'element més innovador rau en la seva utilitat a l'hora de plantejar les activitats de preparació de les excursions. També hi trobem pautes metodològiques per a treballar en els afloraments, idees sobre les activitats de síntesi etc. Geocamp consta de 4 blocs: "Preparem la sortida" (elecció del lloc, transport, predicció meteorològica, material necessari, materials didàctics, enllaços d'interès etc.), "El treball de camp" (pautes d'observació, descripció i interpretació de les roques, recomanacions de seguretat etc.), "Itineraris" (exemples regionals propis o disponibles a la xarxa) i "Després de la sortida" (propostes de realització d'un informe final etc.)

The Quest for Orthologs benchmark service and consensus calls in 2020.

The identification of orthologs-genes in different species which descended from the same gene in their last common ancestor-is a prerequisite for many analyses in comparative genomics and molecular evolution. Numerous algorithms and resources have been conceived to address this problem, but benchmarking and interpreting them is fraught with difficulties (need to compare them on a common input dataset, absence of ground truth, computational cost of calling orthologs). To address this, the Quest for Orthologs consortium maintains a reference set of proteomes and provides a web server for continuous orthology benchmarking (http://orthology.benchmarkservice.org). Furthermore, consensus ortholog calls derived from public benchmark submissions are provided on the Alliance of Genome Resources website, the joint portal of NIH-funded model organism databases

The regulatory subunit of PKA-I remains partially structured and undergoes β-aggregation upon thermal denaturation

Background: The regulatory subunit (R) of cAMP-dependent protein kinase (PKA) is a modular flexible protein that responds with large conformational changes to the binding of the effector cAMP. Considering its highly dynamic nature, the protein is rather stable. We studied the thermal denaturation of full-length RIα and a truncated RIα(92-381) that contains the tandem cyclic nucleotide binding (CNB) domains A and B. Methodology/Principal Findings: As revealed by circular dichroism (CD) and differential scanning calorimetry, both RIα proteins contain significant residual structure in the heat-denatured state. As evidenced by CD, the predominantly α-helical spectrum at 25°C with double negative peaks at 209 and 222 nm changes to a spectrum with a single negative peak at 212-216 nm, characteristic of β-structure. A similar α→β transition occurs at higher temperature in the presence of cAMP. Thioflavin T fluorescence and atomic force microscopy studies support the notion that the structural transition is associated with cross-β-intermolecular aggregation and formation of non-fibrillar oligomers. Conclusions/Significance: Thermal denaturation of RIα leads to partial loss of native packing with exposure of aggregation-prone motifs, such as the B' helices in the phosphate-binding cassettes of both CNB domains. The topology of the β-sandwiches in these domains favors inter-molecular β-aggregation, which is suppressed in the ligand-bound states of RIα under physiological conditions. Moreover, our results reveal that the CNB domains persist as structural cores through heat-denaturation. © 2011 Dao et al