Application of a damped Locally Optimized Combination of Images method to the spectral characterization of faint companions using an Integral Field Spectrograph

High-contrast imaging instruments are now being equipped with integral field spectrographs (IFS) to facilitate the detection and characterization of faint substellar companions. Algorithms currently envisioned to handle IFS data, such as the Locally Optimized Combination of Images (LOCI) algorithm, rely upon aggressive point-spread-function (PSF) subtraction, which is ideal for initially identifying companions but results in significantly biased photometry and spectroscopy due to unwanted mixing with residual starlight. This spectro-photometric issue is further complicated by the fact that algorithmic color response is a function of the companion's spectrum, making it difficult to calibrate the effects of the reduction without using iterations involving a series of injected synthetic companions. In this paper, we introduce a new PSF calibration method, which we call "damped LOCI", that seeks to alleviate these concerns. By modifying the cost function that determines the weighting coefficients used to construct PSF reference images, and also forcing those coefficients to be positive, it is possible to extract companion spectra with a precision that is set by calibration of the instrument response and transmission of the atmosphere, and not by post-processing. We demonstrate the utility of this approach using on-sky data obtained with the Project 1640 IFS at Palomar. Damped-LOCI does not require any iterations on the underlying spectral type of the companion, nor does it rely upon priors involving the chromatic and statistical properties of speckles. It is a general technique that can readily be applied to other current and planned instruments that employ IFS's.Comment: Accepted to the Astrophysical Journal Supplement

Serum neurofilament dynamics predicts neurodegeneration and clinical progression in presymptomatic Alzheimer's disease

Neurofilament light chain (NfL) is a promising fluid biomarker of disease progression for various cerebral proteopathies. Here we leverage the unique characteristics of the Dominantly Inherited Alzheimer Network and ultrasensitive immunoassay technology to demonstrate that NfL levels in the cerebrospinal fluid (n = 187) and serum (n = 405) are correlated with one another and are elevated at the presymptomatic stages of familial Alzheimer's disease. Longitudinal, within-person analysis of serum NfL dynamics (n = 196) confirmed this elevation and further revealed that the rate of change of serum NfL could discriminate mutation carriers from non-mutation carriers almost a decade earlier than cross-sectional absolute NfL levels (that is, 16.2 versus 6.8 years before the estimated symptom onset). Serum NfL rate of change peaked in participants converting from the presymptomatic to the symptomatic stage and was associated with cortical thinning assessed by magnetic resonance imaging, but less so with amyloid-β deposition or glucose metabolism (assessed by positron emission tomography). Serum NfL was predictive for both the rate of cortical thinning and cognitive changes assessed by the Mini-Mental State Examination and Logical Memory test. Thus, NfL dynamics in serum predict disease progression and brain neurodegeneration at the early presymptomatic stages of familial Alzheimer's disease, which supports its potential utility as a clinically useful biomarker

Editorial Animal Ethics and Ecotourism

NoneNon

Population Structure of Humpback Whales from Their Breeding Grounds in the South Atlantic and Indian Oceans

Although humpback whales are among the best-studied of the large whales, population boundaries in the Southern Hemisphere (SH) have remained largely untested. We assess population structure of SH humpback whales using 1,527 samples collected from whales at fourteen sampling sites within the Southwestern and Southeastern Atlantic, the Southwestern Indian Ocean, and Northern Indian Ocean (Breeding Stocks A, B, C and X, respectively). Evaluation of mtDNA population structure and migration rates was carried out under different statistical frameworks. Using all genetic evidence, the results suggest significant degrees of population structure between all ocean basins, with the Southwestern and Northern Indian Ocean most differentiated from each other. Effective migration rates were highest between the Southeastern Atlantic and the Southwestern Indian Ocean, followed by rates within the Southeastern Atlantic, and the lowest between the Southwestern and Northern Indian Ocean. At finer scales, very low gene flow was detected between the two neighbouring sub-regions in the Southeastern Atlantic, compared to high gene flow for whales within the Southwestern Indian Ocean. Our genetic results support the current management designations proposed by the International Whaling Commission of Breeding Stocks A, B, C, and X as four strongly structured populations. The population structure patterns found in this study are likely to have been influenced by a combination of long-term maternally directed fidelity of migratory destinations, along with other ecological and oceanographic features in the region

Twenty-three unsolved problems in hydrology (UPH) – a community perspective

This paper is the outcome of a community initiative to identify major unsolved scientific problems in hydrology motivated by a need for stronger harmonisation of research efforts. The procedure involved a public consultation through on-line media, followed by two workshops through which a large number of potential science questions were collated, prioritised, and synthesised. In spite of the diversity of the participants (230 scientists in total), the process revealed much about community priorities and the state of our science: a preference for continuity in research questions rather than radical departures or redirections from past and current work. Questions remain focussed on process-based understanding of hydrological variability and causality at all space and time scales. Increased attention to environmental change drives a new emphasis on understanding how change propagates across interfaces within the hydrological system and across disciplinary boundaries. In particular, the expansion of the human footprint raises a new set of questions related to human interactions with nature and water cycle feedbacks in the context of complex water management problems. We hope that this reflection and synthesis of the 23 unsolved problems in hydrology will help guide research efforts for some years to come

The James Webb Space Telescope Mission

Twenty-six years ago a small committee report, building on earlier studies, expounded a compelling and poetic vision for the future of astronomy, calling for an infrared-optimized space telescope with an aperture of at least $4m$. With the support of their governments in the US, Europe, and Canada, 20,000 people realized that vision as the $6.5m$ James Webb Space Telescope. A generation of astronomers will celebrate their accomplishments for the life of the mission, potentially as long as 20 years, and beyond. This report and the scientific discoveries that follow are extended thank-you notes to the 20,000 team members. The telescope is working perfectly, with much better image quality than expected. In this and accompanying papers, we give a brief history, describe the observatory, outline its objectives and current observing program, and discuss the inventions and people who made it possible. We cite detailed reports on the design and the measured performance on orbit.Comment: Accepted by PASP for the special issue on The James Webb Space Telescope Overview, 29 pages, 4 figure

Finishing the euchromatic sequence of the human genome

The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead

Roost selection and home range of an African insectivorous bat Nycteris thebaica (Chiroptera, Nycteridae)

Roost site selection, daily movement patterns and home range area of African bats are poorly known. We used radio-telemetry to investigate these parameters in the African bat Nycteris thebaica. The bats predominantly used antbear Orycteropus afer burrows or culverts as night roosts. Day roost sites included caves and antbear burrows. Individuals travelled an average of 1.1 km between day roosts and foraging areas, a distance similar to that predicted from a comparative study of aspect ratios. Foraging (home) ranges were relatively small and averaged 12.9 ha. The foraging range of each bat overlapped on average with the ranges of 4.3 neighbouring bats, and the area of overlap covered 49% of its foraging range. For a bat with low wingloading, N. thebaica is capable of large travelling distances, suggesting that it is a strong flyer. We suggest that antbear burrows are not limiting; however, it is likely that these bats travel beyond the foraging area for more optimal roosts such as caves