12 research outputs found

    Polydimethylsiloxane (silicone rubber) brooch as a personal passive air sampler for semi-volatile organic compounds

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    Exposure assessments conducted using a personal sampler include the contribution of human activities to exposure that is neglected when using a stationary air sampler. This study evaluated the uptake characteristics and application of the polydimethylsiloxane (PDMS or silicone rubber) brooch as a personal passive air sampler (PPAS) for measuring concentrations of two groups of semi-volatile organic compounds (SVOCs), namely phthalates and organophosphate esters (OPEs), indoors in proximity to the breathing zone. Uptake rates of the PDMS brooch were calibrated against a personal low volume active air sampler (PLV-AAS) co-deployed on each of five study participants working in offices for 8 hs daily for four days. Sampling rates measured here ranged from 0.41 ± 0.33 to 1.33 ± 0.34 m3 day−1 dm−2 with an average value of 0.86 ± 0.29 m3 day−1 dm−2. Personal air concentrations of 1211 to 2640 ng m−3 for ∑5 phthalates and 254 to 663 ng m−3 for ∑5 OPEs were measured for three study participants who used the PDMS brooches continuously for seven days. These concentrations resulted in estimated inhalation exposures of 19,400 to 42,400 ng day−1 for ∑5 phthalates and 4,070 to 10,600 ng day−1 for ∑5 OPEs. This study demonstrated that the PDMS brooch can be used to assess inhalation exposure when worn for at least 24 h indoors, for compounds present in >4 ng m−3 in air such as individual phthalates and OPEs tested here.Research funding was provided by Environment and Climate Change Canada (GCXE17S017), the Allergy, Genes and Environment Network (Aller Gen NCE, No. 12ASI3), Health Canada (Agreement No. 4500308341), the Natural Sciences and Engineering Research Council of Canada (NSERC, No. RGPAS 429679-12). Maria Lorenzo research visit to University of Toronto was supported by the Foundation Tatiana PĂ©rez de GuzmĂĄn el Bueno (Predoctoral Grant 2014). We thank Yuchao Wan of Diamond Environmental Lab, University of Toronto for helping with instrument maintenance, the volunteers who wore the personal samplers and Dalla Lana School of Public Health, University of Toronto for lending us the active sampler pumps.Peer reviewe

    Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

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    The epigenome orchestrates genome accessibility, functionality, and three-dimensional structure. Because epigenetic variation can impact transcription and thus phenotypes, it may contribute to adaptation. Here, we report 1,107 high-quality single-base resolution methylomes and 1,203 transcriptomes from the 1001 Genomes collection of Arabidopsis thaliana. Although the genetic basis of methylation variation is highly complex, geographic origin is a major predictor of genome-wide DNA methylation levels and of altered gene expression caused by epialleles. Comparison to cistrome and epicistrome datasets identifies associations between transcription factor binding sites, methylation, nucleotide variation, and co-expression modules. Physical maps for nine of the most diverse genomes reveal how transposons and other structural variants shape the epigenome, with dramatic effects on immunity genes. The 1001 Epigenomes Project provides a comprehensive resource for understanding how variation in DNA methylation contributes to molecular and non-molecular phenotypes in natural populations of the most studied model plant

    Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

    No full text
    The epigenome orchestrates genome accessibility, functionality, and three-dimensional structure. Because epigenetic variation can impact transcription and thus phenotypes, it may contribute to adaptation. Here, we report 1,107 high-quality single-base resolution methylomes and 1,203 transcriptomes from the 1001 Genomes collection of Arabidopsis thaliana. Although the genetic basis of methylation variation is highly complex, geographic origin is a major predictor of genome-wide DNA methylation levels and of altered gene expression caused by epialleles. Comparison to cistrome and epicistrome datasets identifies associations between transcription factor binding sites, methylation, nucleotide variation, and co-expression modules. Physical maps for nine of the most diverse genomes reveal how transposons and other structural variants shape the epigenome, with dramatic effects on immunity genes. The 1001 Epigenomes Project provides a comprehensive resource for understanding how variation in DNA methylation contributes to molecular and non-molecular phenotypes in natural populations of the most studied model plant
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