The challenges and opportunities of addressing particle size effects in sediment source fingerprinting: A review

publisher: Elsevier articletitle: The challenges and opportunities of addressing particle size effects in sediment source fingerprinting: A review journaltitle: Earth-Science Reviews articlelink: http://dx.doi.org/10.1016/j.earscirev.2017.04.009 content_type: article copyright: © 2017 Elsevier B.V. All rights reserved

Whole-genome sequencing reveals host factors underlying critical COVID-19

Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

Tropospheric concentrations of the chlorinated solvents, tetrachloroethene, and trichloroethene, measured in the remote Northern Hemisphere

A fully automated twin ECD gas chromatograph system with sample enriching adsorption–desorption primary stage was deployed on two field campaigns – Ny-Ålesund, Svalbard, Arctic Norway (July–September 1997), and the RRS Discovery CHAOS cruise of the northeast Atlantic (April–May 1998). Concentrations of an extensive set of halocarbons were detected at hourly intervals at pptv levels. We present here the results obtained for the chlorinated solvents, tetrachloroethene (PCE) and trichloroethene (TCE). Average baseline PCE and TCE concentrations of 1.77 and 0.12 pptv, respectively, were recorded in Ny-Ålesund. During pollution incidences, concentrations rose to 5.61 (PCE) and 3.18 pptv (TCE). The cruise data showed average concentrations ranging from 4.26 (PCE) and 1.66 pptv (TCE) for air masses originating over the North Atlantic and Arctic open oceans, to maxima of 15.59 (PCE) and 17.51 pptv (TCE) for polluted air masses from Northern Europe. The data sets emphasise the difficulties in defining remote sites for background tropospheric halocarbon measurements, as Ny-Ålesund research station proved to be a source of tetrachloroethene. The data also suggest possible oceanic emissions of trichloroethene in the sub-tropical ocean