Suivi des introgressions dans les croisements interspécifiques chez le riz : utilisation des marqueurs moléculaires

La diversité génétique des espèces sauvages de riz est d'un grand intérêt en amélioration des plantes. Malgré de fortes barrières reproductives, des hybrides interspécifiques peuvent être obtenus grâce à la récupération des embryons par culture #in vitro et être recroisés ensuite pour introduire des caractères utiles dans les riz cultivés. Au fur et à mesure que la carte de liaison génétique RFLP (polymorphisme de longueur de fragment de restriction) devient de plus en plus saturée, les marqueurs moléculaires constituent un nouvel outil puissant pour analyser et comprendre les mécanismes de la recombinaison dans les croisements éloignés. Trois exemples d'application des marqueurs moléculaires au suivi des introgressions sont présentés à partir d'activités développées à l'ORSTOM (Institut Français de Recherche Scientifique pour le Développement en Coopération) de Montpellier ou de collaborations avec l'IRRI (Institut International de Recherche sur le Riz, Philippines) et l'Université Cornell (Etats-Unis). Ils concernent l'analyse de générations précoces ou de lignées isogéniques développées avec des espèces sauvages de riz possédant le même génome que le riz cultivé (#O. longistaminata) ou des génomes cytogénétiquement différents (#O. brachyantha, génome F) et (#O. australiensis, génome E). (Résumé d'auteur

Historical Contingencies Modulate the Adaptability of Rice Yellow Mottle Virus

The rymv1-2 and rymv1-3 alleles of the RYMV1 resistance to Rice yellow mottle virus (RYMV), coded by an eIF(iso)4G1 gene, occur in a few cultivars of the Asiatic (Oryza sativa) and African (O. glaberrima) rice species, respectively. The most salient feature of the resistance breaking (RB) process is the converse genetic barrier to rymv1-2 and rymv1-3 resistance breakdown. This specificity is modulated by the amino acid (glutamic acid vs. threonine) at codon 49 of the Viral Protein genome-linked (VPg), a position which is adjacent to the virulence codons 48 and 52. Isolates with a glutamic acid (E) do not overcome rymv1-3 whereas those with a threonine (T) rarely overcome rymv1-2. We found that isolates with T49 had a strong selective advantage over isolates with E49 in O. glaberrima susceptible cultivars. This explains the fixation of the mutation T49 during RYMV evolution and accounts for the diversifying selection estimated at codon 49. Better adapted to O. glaberrima, isolates with T49 are also more prone than isolates with E49 to fix rymv1-3 RB mutations at codon 52 in resistant O. glaberrima cultivars. However, subsequent genetic constraints impaired the ability of isolates with T49 to fix rymv1-2 RB mutations at codons 48 and 52 in resistant O. sativa cultivars. The origin and role of the amino acid at codon 49 of the VPg exemplifies the importance of historical contingencies in the ability of RYMV to overcome RYMV1 resistance

Diversity in Protein Glycosylation among Insect Species

status: publishe

Consensus guidelines for the use and interpretation of angiogenesis assays

The formation of new blood vessels, or angiogenesis, is a complex process that plays important roles in growth and development, tissue and organ regeneration, as well as numerous pathological conditions. Angiogenesis undergoes multiple discrete steps that can be individually evaluated and quantified by a large number of bioassays. These independent assessments hold advantages but also have limitations. This article describes in vivo, ex vivo, and in vitro bioassays that are available for the evaluation of angiogenesis and highlights critical aspects that are relevant for their execution and proper interpretation. As such, this collaborative work is the first edition of consensus guidelines on angiogenesis bioassays to serve for current and future reference

Microglial brain region−dependent diversity and selective regional sensitivities to aging

Microglia play critical roles in neural development, homeostasis and neuroinflammation and are increasingly implicated in age-related neurological dysfunction. Neurodegeneration often occurs in disease-specific spatially-restricted patterns, the origins of which are unknown. We performed the first genome-wide analysis of microglia from discrete brain regions across the adult lifespan of the mouse and reveal that microglia have distinct region-dependent transcriptional identities and age in a regionally variable manner. In the young adult brain, differences in bioenergetic and immunoregulatory pathways were the major sources of heterogeneity and suggested that cerebellar and hippocampal microglia exist in a more immune vigilant state. Immune function correlated with regional transcriptional patterns. Augmentation of the distinct cerebellar immunophenotype and a contrasting loss in distinction of the hippocampal phenotype among forebrain regions were key features during ageing. Microglial diversity may enable regionally localised homeostatic functions but could also underlie region-specific sensitivities to microglial dysregulation and involvement in age-related neurodegeneration

Tumour hypoxia causes DNA hypermethylation by reducing TET activity

Hypermethylation of the promoters of tumour suppressor genes represses transcription of these genes, conferring growth advantages to cancer cells. How these changes arise is poorly understood. Here we show that the activity of oxygen-dependent ten-eleven translocation (TET) enzymes is reduced by tumour hypoxia in human and mouse cells. TET enzymes catalyse DNA demethylation through 5-methylcytosine oxidation. This reduction in activity occurs independently of hypoxia-associated alterations in TET expression, proliferation, metabolism, hypoxia-inducible factor activity or reactive oxygen species, and depends directly on oxygen shortage. Hypoxia-induced loss of TET activity increases hypermethylation at gene promoters in vitro. In patients, tumour suppressor gene promoters are markedly more methylated in hypoxic tumour tissue, independent of proliferation, stromal cell infiltration and tumour characteristics. Our data suggest that up to half of hypermethylation events are due to hypoxia, with these events conferring a selective advantage. Accordingly, increased hypoxia in mouse breast tumours increases hypermethylation, while restoration of tumour oxygenation abrogates this effect. Tumour hypoxia therefore acts as a novel regulator of DNA methylatio

The ERK and JNK pathways in the regulation of metabolic reprogramming.

Most tumor cells reprogram their glucose metabolism as a result of mutations in oncogenes and tumor suppressors, leading to the constitutive activation of signaling pathways involved in cell growth. This metabolic reprogramming, known as aerobic glycolysis or the Warburg effect, allows tumor cells to sustain their fast proliferation and evade apoptosis. Interfering with oncogenic signaling pathways that regulate the Warburg effect in cancer cells has therefore become an attractive anticancer strategy. However, evidence for the occurrence of the Warburg effect in physiological processes has also been documented. As such, close consideration of which signaling pathways are beneficial targets and the effect of their inhibition on physiological processes are essential. The MAPK/ERK and MAPK/JNK pathways, crucial for normal cellular responses to extracellular stimuli, have recently emerged as key regulators of the Warburg effect during tumorigenesis and normal cellular functions. In this review, we summarize our current understanding of the roles of the ERK and JNK pathways in controlling the Warburg effect in cancer and discuss their implication in controlling this metabolic reprogramming in physiological processes and opportunities for targeting their downstream effectors for therapeutic purposes.Brunel Research Initiative & Enterprise Fund, Brunel University of London (to CB), Kay Kendall Leukemia Fund (KKL443) (to CB), 250 Great Minds Fellowship, University of Leeds (to SP), AMMF Cholangiocarcinoma Charity (to SP and PMC), and Bloodwise (17014) (to SP and CB)

Suivi des introgressions dans les croisements interspécifiques chez le riz: utilisation des marqueurs moléculaires

La diversité génétique des espèces sauvages de riz est d'un grand intérêt en amélioration des plantes. Malgré de fortes barrières reproductives, des hybrides interspécifiques peuvent être obtenus grâce à la récupération des embryons par culture #in vitro et être recroisés ensuite pour introduire des caractères utiles dans les riz cultivés. Au fur et à mesure que la carte de liaison génétique RFLP (polymorphisme de longueur de fragment de restriction) devient de plus en plus saturée, les marqueurs moléculaires constituent un nouvel outil puissant pour analyser et comprendre les mécanismes de la recombinaison dans les croisements éloignés. Trois exemples d'application des marqueurs moléculaires au suivi des introgressions sont présentés à partir d'activités développées à l'ORSTOM (Institut Français de Recherche Scientifique pour le Développement en Coopération) de Montpellier ou de collaborations avec l'IRRI (Institut International de Recherche sur le Riz, Philippines) et l'Université Cornell (Etats-Unis). Ils concernent l'analyse de générations précoces ou de lignées isogéniques développées avec des espèces sauvages de riz possédant le même génome que le riz cultivé (#O. longistaminata) ou des génomes cytogénétiquement différents (#O. brachyantha, génome F) et (#O. australiensis, génome E). (Résumé d'auteur