The impact of grazing cattle on soil physical properties and nutrient concentrations in overland flow from pasture, Part B

This report has been prepared as part of the Environmental Research Technological Development and Innovation Programme 2000–2006. The programme is financed by the Irish Government under the National Development Plan 2000–2006.End of project reportThe loss of nutrients from agricultural land to water bodies is a serious concern in many countries. To gain information on the contribution of grazing animals to diffuse nutrient losses from pasture areas to water, this study looked at the impact of cattle on nutrient concentrations in overland flow and on soil hydrology (bulk density, macroporosity and resistance to penetration). Rainfall simulations to produce overland flow were conducted and soil physical measurements were taken on experimental plots assigned to one of two treatments: 1) cattle had unrestricted access to the plot; 2) cattle could graze the plot but they could neither walk on the plot area nor deposit excrements on it. Areas to which the cattle had free access were characterised by 57%-83% lower macroporosity, by 8%-17% higher bulk density and by 27%-50% higher resistance to penetration than areas from which the cattle were excluded. The nutrients in overland flow from grassland that were affected by the presence of grazing animals were mainly the particulate nitrogen, the organic phosphorus and the potassium concentrations. Overall, the presence of cattle had a longer lasting effect on the soil hydrological parameters measured than on the nutrient concentrations in overland flow.Environmental Protection Agenc

The inhibiting factors that principal investigators experience in leading publicly funded research

Securing public funding to conduct research and leading it by being a principal investigator (PI) is seen as significant career development step. Such a role brings professional prestige but also new responsibilities beyond research leadership to research management. If public funding brings financial and infrastructure support, little is understood about the inhibiting factors that publicly funded PIs face given the research autonomy offered by publicly funded research. Our study finds that there are three key PI inhibiting factors (1) political and environmental, (2) institutional and (3) project based. Traditional knowledge, skills and technical know-how of publicly funded PIs are insufficient to deal with the increasing managerial demands and expectations i.e. growing external bureaucracy of public funding agencies. Public funding is no longer the 'freest form of support' as suggested by Chubin and Hackett (Peerless science: peer review and US science policy. Suny Press, New York, 1990) and the inhibiting factors experienced by publicly funded PIs limits their research autonomy. We also argue that PIs have little influence in overcoming these inhibiting factors despite their central role in conducting publicly funded research

The outlooks of international students when immersed in an Irish higher education setting

Ireland’s history of education for understanding internationalisation in education is important. The country once used English as a second language but was provoked by famine and opportunity to gradually shift to be an English speaking country. The impacts of this language on Ireland have been profound, and discussion in this analysis establishes how the nation viewed education as a means of opportunity. In the 20th Century, Ireland developed rapidly following membership of the OECD and the EU. Notably, as Ireland modernised it responded to international commonalities, while higher education and participation in the EHEA made Ireland transition to be a more competitive producer of education. The Global Financial Crisis (GFC) impacted Ireland in unprecedented ways. Ireland had been preparing to engage in greater internationalisation in higher education, until economic catastrophe expediated this process. A series of policy changes were implemented in this era signalling widespread reform to meet the requirements of the Bologna Process and economic restrictions. In 2010 and 2016, Irish strategies for internationalisation were revealed. These strategies are critiqued, and a thorough understanding of their outcomes and expectations is considered. Linguistic imperialism is applied to comprehend and establish aspects such as Irish government’s interpretation of global citizenship, which influences the strategies. An interpretivist paradigm guides data collection of semi-structured interviews which analyse the experiences students from China. The significance of the data collected for this study comes from providing Chinese students in Ireland an opportunity to share their experiences and to have a voice in discussions on internationalisation. Five themes emerged from the data: experiences; being a Chinese student in Ireland; role of the university; social networks; career benefits. The penultimate discussion and analysis show the presence of student agency in almost every action carried out. Agency was analysed and discussed in relation to students attempts to become more independent, their need for transferable experiences, and establishing a sense of belonging. Currents mechanisms for assessing students’ progress and supporting life and learning in Ireland appear inadequate and in need of revision

Comparison of photosynthetic performance of Fagus sylvatica seedlings under natural and artificial shading

peer-reviewedCommitment to sustainable forest management (alternatives to clearfelling) has led to a renewed interest in continuous cover forestry systems, which promote the control of light to produce stand benefits. Physiological performance of shade-tolerant European beech (Fagus sylvatica L.) in response to light availability was investigated in natural regeneration below the canopy in contrast to planted seedlings under artificial-shade conditions. Although beech seedlings had higher photosynthetic capacity with increasing light availability, they were able to maintain positive CO2 assimilation rates under low light levels in both field and controlled conditions. Leaves of seedlings under low light had the ability to use light more efficiently (higher PSII efficiency) than those in high light, which offer some physiological explanation for the ability of beech seedlings to grow under very low light conditions. Whilst caution is advised to interpret results from controlled to field studies, the overall general correspondence in the trend of the physiological response to light levels within beech grown below the canopy and under artificial-shade conditions suggests that it might be possible to extrapolate results from studies performed under artificial shade (nets) to field conditions. Hence, the use of nets may be an alternative way of assessing the potential physiological responses of seedlings to light availability.This research was funded by the COFORD Forest Research Programme under the 2007–2013 National Development Plan, administered by the Irish Department of Agriculture, Food and the Marine (DAFM). Ignacio Sevillano was supported by a Walsh Fellowship from Teagasc (Ireland)

European Mixed Forests: definition and research perspectives

peer-reviewedAim of study: We aim at (i) developing a reference definition of mixed forests in order to harmonize comparative research in mixed forests and (ii) briefly review the research perspectives in mixed forests. Area of study: The definition is developed in Europe but can be tested worldwide. Material and methods: Review of existent definitions of mixed forests based and literature review encompassing dynamics, management and economic valuation of mixed forests. Main results: A mixed forest is defined as a forest unit, excluding linear formations, where at least two tree species coexist at any developmental stage, sharing common resources (light, water, and/or soil nutrients). The presence of each of the component species is normally quantified as a proportion of the number of stems or of basal area, although volume, biomass or canopy cover as well as proportions by occupied stand area may be used for specific objectives. A variety of structures and patterns of mixtures can occur, and the interactions between the component species and their relative proportions may change over time. The research perspectives identified are (i) species interactions and responses to hazards, (ii) the concept of maximum density in mixed forests, (iii) conversion of monocultures to mixed-species forest and (iv) economic valuation of ecosystem services provided by mixed forests. Research highlights: The definition is considered a high-level one which encompasses previous attempts to define mixed forests. Current fields of research indicate that gradient studies, experimental design approaches, and model simulations are key topics providing new research opportunities.The networking in this study has been supported by COST Action FP1206 EuMIXFOR

Mapping the Steroid Response to Major Trauma From Injury to Recovery : A Prospective Cohort Study

CONTEXT: Survival rates after severe injury are improving, but complication rates and outcomes are variable. OBJECTIVE: This cohort study addressed the lack of longitudinal data on the steroid response to major trauma and during recovery. DESIGN: We undertook a prospective, observational cohort study from time of injury to 6 months postinjury at a major UK trauma centre and a military rehabilitation unit, studying patients within 24 hours of major trauma (estimated New Injury Severity Score (NISS) > 15). MAIN OUTCOME MEASURES: We measured adrenal and gonadal steroids in serum and 24-hour urine by mass spectrometry, assessed muscle loss by ultrasound and nitrogen excretion, and recorded clinical outcomes (ventilator days, length of hospital stay, opioid use, incidence of organ dysfunction, and sepsis); results were analyzed by generalized mixed-effect linear models. FINDINGS: We screened 996 multiple injured adults, approached 106, and recruited 95 eligible patients; 87 survived. We analyzed all male survivors <50 years not treated with steroids (N = 60; median age 27 [interquartile range 24-31] years; median NISS 34 [29-44]). Urinary nitrogen excretion and muscle loss peaked after 1 and 6 weeks, respectively. Serum testosterone, dehydroepiandrosterone, and dehydroepiandrosterone sulfate decreased immediately after trauma and took 2, 4, and more than 6 months, respectively, to recover; opioid treatment delayed dehydroepiandrosterone recovery in a dose-dependent fashion. Androgens and precursors correlated with SOFA score and probability of sepsis. CONCLUSION: The catabolic response to severe injury was accompanied by acute and sustained androgen suppression. Whether androgen supplementation improves health outcomes after major trauma requires further investigation

The development and validation of a scoring tool to predict the operative duration of elective laparoscopic cholecystectomy

Background: The ability to accurately predict operative duration has the potential to optimise theatre efficiency and utilisation, thus reducing costs and increasing staff and patient satisfaction. With laparoscopic cholecystectomy being one of the most commonly performed procedures worldwide, a tool to predict operative duration could be extremely beneficial to healthcare organisations. Methods: Data collected from the CholeS study on patients undergoing cholecystectomy in UK and Irish hospitals between 04/2014 and 05/2014 were used to study operative duration. A multivariable binary logistic regression model was produced in order to identify significant independent predictors of long (> 90 min) operations. The resulting model was converted to a risk score, which was subsequently validated on second cohort of patients using ROC curves. Results: After exclusions, data were available for 7227 patients in the derivation (CholeS) cohort. The median operative duration was 60 min (interquartile range 45–85), with 17.7% of operations lasting longer than 90 min. Ten factors were found to be significant independent predictors of operative durations > 90 min, including ASA, age, previous surgical admissions, BMI, gallbladder wall thickness and CBD diameter. A risk score was then produced from these factors, and applied to a cohort of 2405 patients from a tertiary centre for external validation. This returned an area under the ROC curve of 0.708 (SE = 0.013, p  90 min increasing more than eightfold from 5.1 to 41.8% in the extremes of the score. Conclusion: The scoring tool produced in this study was found to be significantly predictive of long operative durations on validation in an external cohort. As such, the tool may have the potential to enable organisations to better organise theatre lists and deliver greater efficiencies in care

Dissecting the Shared Genetic Architecture of Suicide Attempt, Psychiatric Disorders, and Known Risk Factors

Background Suicide is a leading cause of death worldwide, and nonfatal suicide attempts, which occur far more frequently, are a major source of disability and social and economic burden. Both have substantial genetic etiology, which is partially shared and partially distinct from that of related psychiatric disorders. Methods We conducted a genome-wide association study (GWAS) of 29,782 suicide attempt (SA) cases and 519,961 controls in the International Suicide Genetics Consortium (ISGC). The GWAS of SA was conditioned on psychiatric disorders using GWAS summary statistics via multitrait-based conditional and joint analysis, to remove genetic effects on SA mediated by psychiatric disorders. We investigated the shared and divergent genetic architectures of SA, psychiatric disorders, and other known risk factors. Results Two loci reached genome-wide significance for SA: the major histocompatibility complex and an intergenic locus on chromosome 7, the latter of which remained associated with SA after conditioning on psychiatric disorders and replicated in an independent cohort from the Million Veteran Program. This locus has been implicated in risk-taking behavior, smoking, and insomnia. SA showed strong genetic correlation with psychiatric disorders, particularly major depression, and also with smoking, pain, risk-taking behavior, sleep disturbances, lower educational attainment, reproductive traits, lower socioeconomic status, and poorer general health. After conditioning on psychiatric disorders, the genetic correlations between SA and psychiatric disorders decreased, whereas those with nonpsychiatric traits remained largely unchanged. Conclusions Our results identify a risk locus that contributes more strongly to SA than other phenotypes and suggest a shared underlying biology between SA and known risk factors that is not mediated by psychiatric disorders.Peer reviewe