Shrike predation on the lizard Mesalina adramitana in Qatar; a review of reported reptile and amphibian prey

We report, for the first time, evidence of predation by a shrike (Lanius sp.) on the lizard Mesalina adramitana. This is the first record of predation by shrikes on lizards in Qatar. Whilst we did not directly observe the event, the presence of shrikes in the area and the method of impalement indicate shrikes as the predator. The lizard was found freshly impaled on a palm tree (Phoenix dactylifera), at 150 cm above ground. Bird species of the genus Lanius are well-known predators of lizards, and in arid environments reptiles are likely common prey for these birds. We provide a review of literature concerning predatory events by shrikes on reptiles and amphibians. We suggest inspection of shrubs for animals impaled by shrikes can improve biodiversity inventories, complementing other commonly used methods

Variability in Working Memory Performance Explained by Epistasis vs Polygenic Scores in the ZNF804A Pathway

Importance: We investigated the variation in neuropsychological function explained by risk alleles at the psychosis susceptibility gene ZNF804A and its interacting partners using single nucleotide polymorphisms (SNPs), polygenic scores, and epistatic analyses. Of particular importance was the relative contribution of the polygenic score vs epistasis in variation explained. Objectives To (1) assess the association between SNPs in ZNF804A and the ZNF804A polygenic score with measures of cognition in cases with psychosis and (2) assess whether epistasis within the ZNF804A pathway could explain additional variation above and beyond that explained by the polygenic score. Design, Setting, and Participants: Patients with psychosis (n = 424) were assessed in areas of cognitive ability impaired in schizophrenia including IQ, memory, attention, and social cognition. We used the Psychiatric GWAS Consortium 1 schizophrenia genome-wide association study to calculate a polygenic score based on identified risk variants within this genetic pathway. Cognitive measures significantly associated with the polygenic score were tested for an epistatic component using a training set (n = 170), which was used to develop linear regression models containing the polygenic score and 2-SNP interactions. The best-fitting models were tested for replication in 2 independent test sets of cases: (1) 170 individuals with schizophrenia or schizoaffective disorder and (2) 84 patients with broad psychosis (including bipolar disorder, major depressive disorder, and other psychosis). Main Outcomes and Measures: Participants completed a neuropsychological assessment battery designed to target the cognitive deficits of schizophrenia including general cognitive function, episodic memory, working memory, attentional control, and social cognition. Results: Higher polygenic scores were associated with poorer performance among patients on IQ, memory, and social cognition, explaining 1% to 3% of variation on these scores (range, P = .01 to .03). Using a narrow psychosis training set and independent test sets of narrow phenotype psychosis (schizophrenia and schizoaffective disorder), broad psychosis, and control participants (n = 89), the addition of 2 interaction terms containing 2 SNPs each increased the R2 for spatial working memory strategy in the independent psychosis test sets from 1.2% using the polygenic score only to 4.8% (P = .11 and .001, respectively) but did not explain additional variation in control participants. Conclusions and Relevance: These data support a role for the ZNF804A pathway in IQ, memory, and social cognition in cases. Furthermore, we showed that epistasis increases the variation explained above the contribution of the polygenic score

The great tit HapMap project: A continental‐scale analysis of genomic variation in a songbird

This is the final version. Available on open access from Wiley via the DOI in this recordData availability statement: The code to reproduce the results is available on Github: https://github.com/lgs85/SpurginBosse_Hapmap. The data, including the Plink-formatted genotype files from all populations, and the downstream outputs are on Dryad: https://doi.org/10.5061/dryad.w3r2280z5.A major aim of evolutionary biology is to understand why patterns of genomic diversity vary within taxa and space. Large-scale genomic studies of widespread species are useful for studying how environment and demography shape patterns of genomic divergence. Here, we describe one of the most geographically comprehensive surveys of genomic variation in a wild vertebrate to date; the great tit (Parus major) HapMap project. We screened ca 500,000 SNP markers across 647 individuals from 29 populations, spanning ~30 degrees of latitude and 40 degrees of longitude – almost the entire geographical range of the European subspecies. Genome-wide variation was consistent with a recent colonisation across Europe from a South-East European refugium, with bottlenecks and reduced genetic diversity in island populations. Differentiation across the genome was highly heterogeneous, with clear ‘islands of differentiation’, even among populations with very low levels of genome-wide differentiation. Low local recombination rates were a strong predictor of high local genomic differentiation (FST), especially in island and peripheral mainland populations, suggesting that the interplay between genetic drift and recombination causes highly heterogeneous differentiation landscapes. We also detected genomic outlier regions that were confined to one or more peripheral great tit populations, probably as a result of recent directional selection at the species' range edges. Haplotype-based measures of selection were related to recombination rate, albeit less strongly, and highlighted population-specific sweeps that likely resulted from positive selection. Our study highlights how comprehensive screens of genomic variation in wild organisms can provide unique insights into spatio-temporal evolutionary dynamics.Natural Environment Research Council (NERC)European Research Council (ERC)Biotechnology and Biological Sciences Research Council (BBSRC

Assessing the ecological and societal impacts of alien parrots in Europe using a transparent and inclusive evidence-mapping scheme

Globally, the number of invasive alien species (IAS) continues to increase, and management and policy responses typically need to be adopted before conclusive empirical evidence on their environmental and socioeconomic impacts are available. Consequently, numerous protocols exist for assessing IAS impacts, and differ considerably in which evidence they include. However, inclusive strategies for building a transparent evidence base underlying IAS impact assessments are lacking, potentially affecting our ability to reliably identify priority IAS. Using alien parrots in Europe as a case study, here we apply an evidence-mapping scheme to classify impact evidence and evaluate the consequences of accepting different subsets of available evidence on impact assessment outcomes. We collected environmental and socioeconomic impact data in multiple languages using a “wiki-review” process, comprising a systematic evidence search and an online editing and consultation phase. Evidence was classified by parrot species, impact category (e.g. infrastructure), geographical area (e.g. native range), source type (e.g. peer-review), study design (e.g. experimental), and impact direction (deleterious, beneficial and no impact). Our comprehensive database comprised 386 impact entries from 233 sources. Most evidence was anecdotal (50%). 42% of entries reported damage to agriculture (mainly in native ranges), while within Europe most entries concerned interspecific competition (39%). We demonstrate that the types of evidence included in assessments can strongly influence impact severity scores. For example, including evidence from the native range or anecdotal evidence resulted in an overall switch from minimal-moderate to moderate-major overall impact scores. We advise using such an evidence-mapping approach to create an inclusive and updatable database as the foundation for more transparent IAS impact assessments. When openly shared, such evidence-mapping can help better inform IAS research, management and policy

Rodent faunas from the Paleogene of south-east Serbia

Seven new rodent faunas are described from the Pčinja and Babušnica-Koritnica basins of south-east Serbia. The geology of the Tertiary deposits in the Pčinja and Koritnica-Babušnica basins of south-east Serbia is briefly reviewed. The fossil content of the new vertebrate localities is listed, and an inventory of the rodent associations is presented. The rodent associations are late Eocene-early Oligocene in age, interpreted on biostratigraphical grounds. These are the first rodent faunas of that age from the Balkan area, an important palaeogeographic location between Europe and Asia. The Muridae, with the subfamilies Pseudocricetodontinae, Paracricetodontinae, Pappocricetodontinae, Melissiodontinae and ?Spalacinae, are dominant with eight genera, four of which are new. The diversity of the Melissiodontinae and Paracricetodontinae in the faunas suggests that these subfamilies originated in this region. The bi-lophodont cheek teeth occurring in the Oligocene assemblages are identified as the first record of the Diatomyidae outside of Asia. In light of the large amount of new data, the palaeogeographic setting and faunal turnover of the Eocene-Oligocene is discussed