7,958 research outputs found

    Metastability in Markov processes

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    We present a formalism to describe slowly decaying systems in the context of finite Markov chains obeying detailed balance. We show that phase space can be partitioned into approximately decoupled regions, in which one may introduce restricted Markov chains which are close to the original process but do not leave these regions. Within this context, we identify the conditions under which the decaying system can be considered to be in a metastable state. Furthermore, we show that such metastable states can be described in thermodynamic terms and define their free energy. This is accomplished showing that the probability distribution describing the metastable state is indeed proportional to the equilibrium distribution, as is commonly assumed. We test the formalism numerically in the case of the two-dimensional kinetic Ising model, using the Wang--Landau algorithm to show this proportionality explicitly, and confirm that the proportionality constant is as derived in the theory. Finally, we extend the formalism to situations in which a system can have several metastable states.Comment: 30 pages, 5 figures; version with one higher quality figure available at http://www.fis.unam.mx/~dsanders

    Relationship between cellular response and behavioral variability in bacterial chemotaxis

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    Bacterial chemotaxis in Escherichia coli is a canonical system for the study of signal transduction. A remarkable feature of this system is the coexistence of precise adaptation in population with large fluctuating cellular behavior in single cells (Korobkova et al. 2004, Nature, 428, 574). Using a stochastic model, we found that the large behavioral variability experimentally observed in non-stimulated cells is a direct consequence of the architecture of this adaptive system. Reversible covalent modification cycles, in which methylation and demethylation reactions antagonistically regulate the activity of receptor-kinase complexes, operate outside the region of first-order kinetics. As a result, the receptor-kinase that governs cellular behavior exhibits a sigmoidal activation curve. This curve simultaneously amplifies the inherent stochastic fluctuations in the system and lengthens the relaxation time in response to stimulus. Because stochastic fluctuations cause large behavioral variability and the relaxation time governs the average duration of runs in response to small stimuli, cells with the greatest fluctuating behavior also display the largest chemotactic response. Finally, Large-scale simulations of digital bacteria suggest that the chemotaxis network is tuned to simultaneously optimize the random spread of cells in absence of nutrients and the cellular response to gradients of attractant.Comment: 15 pages, 4 figures, Supporting information available here http://cluzel.uchicago.edu/data/emonet/arxiv_070531_supp.pd

    Preoperative predictors of sternotomy need in mediastinal goiter management

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    BACKGROUND: The objective of this study was to identify the preoperative risk factors for patients in need of a sternotomy in the management of mediastinal goiters in order to provide better preoperative planning and patient consent. METHODS: We analyzed 98 patients who underwent surgery for mediastinal goiters (goiters extending below the thoracic inlet > or =3 cm with the neck in hyperextension) between 1995 and 2008. Twelve (12.2%) of the patients required a sternotomy. The patients' features were analyzed by the surgical approach performed. Logistic regression analysis was used to study which variables were influencing the surgical strategy. The receiver operating characteristic (ROC) curves were designed when appropriate. RESULTS: The analysis disclosed the following risk factors: radiologic extension of mediastinal goiters below the aortic arch (odds ratio [OR] = 32.87; 95% confidence interval [CI] = 4.04-267.12; p 160 months: OR = 22.8; 95% CI = 5.28-98.53; p < .0001). CONCLUSIONS: Sternotomy need for mediastinal goiter removal can be predicted; in such cases surgeons should not hesitate to perform it for minimizing complications

    The Halos of Satellite Galaxies: the Companion of the Massive Elliptical Lens SL2S J08544-0121

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    Strong gravitational lensing by groups or clusters of galaxies provides a powerful technique to measure the dark matter properties of individual lens galaxies. We study in detail the mass distribution of the satellite lens galaxy in the group-scale lens SL2S J08544-0121 by modelling simultaneously the spatially extended surface brightness distribution of the source galaxy and the lens mass distribution using Markov chain Monte Carlo methods. In particular, we measure the dark matter halo size of the satellite lens galaxy to be 6.0^{+2.9}_{-2.0} kpc with a fiducial velocity dispersion of 127^{+21}_{-12} km/s. This is the first time the size of an individual galaxy halo in a galaxy group has been measured using strong gravitational lensing without assumptions of mass following light. We verify the robustness of our halo size measurement using mock data resembling our lens system. Our measurement of the halo size is compatible with the estimated tidal radius of the satellite galaxy, suggesting that halos of galaxies in groups experience significant tidal stripping, a process that has been previously observed on galaxies in clusters. Our mass model of the satellite galaxy is elliptical with its major axis misaligned with that of the light by ~50 deg. The major axis of the total matter distribution is oriented more towards the centre of the host halo, exhibiting the radial alignment found in N-body simulations and observational studies of satellite galaxies. This misalignment between mass and light poses a significant challenge to modified Newtonian dynamics.Comment: 13 pages, 10 figures, minor revisions based on referee's comments, accepted for publication in A&

    Chandra measurements of non-thermal-like X-ray emission from massive, merging, radio-halo clusters

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    We report the discovery of spatially-extended, non-thermal-like emission components in Chandra X-ray spectra for five of a sample of seven massive, merging galaxy clusters with powerful radio halos. The emission components can be fitted by power-law models with mean photon indices in the range 1.5 < Gamma < 2.0. A control sample of regular, dynamically relaxed clusters, without radio halos but with comparable mean thermal temperatures and luminosities, shows no compelling evidence for similar components. Detailed X-ray spectral mapping reveals the complex thermodynamic states of the radio halo clusters. Our deepest observations, of the Bullet Cluster 1E 0657-56, demonstrate a spatial correlation between the strongest power-law X-ray emission, highest thermal pressure, and brightest 1.34GHz radio halo emission in this cluster. We confirm the presence of a shock front in the 1E 0657-56 and report the discovery of a new, large-scale shock front in Abell 2219. We explore possible origins for the power-law X-ray components. These include inverse Compton scattering of cosmic microwave background photons by relativistic electrons in the clusters; bremsstrahlung from supra-thermal electrons energized by Coulomb collisions with an energetic, nonthermal proton population; and synchrotron emission associated with ultra-relativistic electrons. Interestingly, we show that the power-law signatures may also be due to complex temperature and/or metallicity structure in clusters particularly in the presence of metallicity gradients. In this case, an important distinguishing characteristic between the radio halo clusters and control sample of predominantly cool-core clusters is the relatively low central X-ray surface brightness of the former.Comment: Accepted for publication in MNRAS (24 pages, 13 figures). Improved discussion includes a new, possible explanation for `soft excess' X-ray emission from clusters as an artifact of metallicity/temperature structure and projection effects. Other physical explanations for the observed non-thermal-like X-ray emission also remai

    Galaxy Motions, Turbulence and Conduction in Clusters of Galaxies

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    Unopposed radiative cooling in clusters of galaxies results in excessive mass deposition rates. However, the cool cores of galaxy clusters are continuously heated by thermal conduction and turbulent heat diffusion due to minor mergers or the galaxies orbiting the cluster center. These processes can either reduce the energy requirements for AGN heating of cool cores, or they can prevent overcooling altogether. We perform 3D MHD simulations including field-aligned thermal conduction and self-gravitating particles to model this in detail. Turbulence is not confined to the wakes of galaxies but is instead volume-filling, due to the excitation of large-scale g-modes. We systematically probe the parameter space of galaxy masses and numbers. For a wide range of observationally motivated galaxy parameters, the magnetic field is randomized by stirring motions, restoring the conductive heat flow to the core. The cooling catastrophe either does not occur or it is sufficiently delayed to allow the cluster to experience a major merger that could reset conditions in the intracluster medium. Whilst dissipation of turbulent motions is negligible as a heat source, turbulent heat diffusion is extremely important; it predominates in the cluster center. However, thermal conduction becomes important at larger radii, and simulations without thermal conduction suffer a cooling catastrophe. Conduction is important both as a heat source and to reduce stabilizing buoyancy forces, enabling more efficient diffusion. Turbulence enables conduction, and conduction enables turbulence. In these simulations, the gas vorticity---which is a good indicator of trapped g-modes--increases with time. The vorticity growth is approximately mirrored by the growth of the magnetic field, which is amplified by turbulence.Comment: Submitted to MNRA
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