An Endogenous Retrovirus from Human Hookworm Encodes an Ancient Phlebovirus-Like Class II Envelope Fusion Protein

Within the parasitic nematode Ancylostoma ceylanicum, a ~20 million-year-old Bel/Pao LTR retrotransposon encodes an ancient viral class II envelope fusion protein termed Atlas Gc. Typically, retroviruses and related degenerate retrotransposons encode a hemagglutinin-like class I envelope fusion protein. A subset of Bel/Pao LTR retrotransposons within the phylum Nematoda have acquired a phlebovirus-like envelope gene and utilized the encoded fusion machinery to escape the genome as intact exogenous retroviruses. This includes C. elegans retroelement 7 virus which was recently reclassified as a member of the genus Semotivirus. A 3.76 Å cryoEM reconstruction confirms Atlas Gc as a closely related phleboviral homologue and class II fusion protein in a novel case of gene exaptation. Preliminary biophysical and biochemical characterization indicate Atlas Gc functions under specific physiological conditions targeting late-endosomal membranes, much like modern viral class II envelope fusion proteins. Phylogenetic analyses support the reclassification of the Atlas endogenous retrovirus and five other A. ceylanicum ERVs as novel semotiviruses of Belpaoviridae of the new viral order of reverse-transcribing viruses Ortervirales

Fiber-Optic Sensor for Aircraft Lightning Current Measurement

An electric current sensor based on Faraday rotation effect in optical fiber was developed for measuring aircraft lightning current. Compared to traditional sensors, the design has many advantages including the ability to measure total current and to conform to structure geometries. The sensor is also small, light weight, non-conducting, safe from interference, and free of hysteresis and saturation. Potential applications include characterization of lightning current waveforms, parameters and paths, and providing environmental data for aircraft certifications. In an optical fiber as the sensing medium, light polarization rotates when exposed to a magnetic field in the direction of light propagation. By forming closed fiber loops around a conductor and applying Ampere s law, measuring the total light rotation yields the enclosed current. A reflective polarimetric scheme is used, where polarization change is measured after the polarized light travels round-trip through the sensing fiber. The sensor system was evaluated measuring rocket-triggered lightning over the 2011 summer. Early results compared very well against a reference current shunt resistor, demonstrating the sensor's accuracy and feasibility in a lightning environment. While later comparisons show gradually increasing amplitude deviations for an undetermined cause, the overall waveforms still compared very well

Lightning Current Measurement with Fiber-Optic Sensor

A fiber-optic current sensor is successfully developed with many potential applications for electric current measurement. Originally developed for in-flight lightning measurement, the sensor utilizes Faraday Effect in an optical fiber. The Faraday Effect causes linear light polarization in a fiber to rotate when the fiber is exposed to a magnetic field. The polarization change is detected using a reflective polarimetric scheme. Forming fiber loops and applying Ampere's law, measuring the total light rotation results in the determination of the total current enclosed. The sensor is conformable to complex structure geometry. It is also non-conductive and immune to electromagnetic interference, saturation or hysteresis. Installation is non-intrusive, and the sensor can be safely routed through flammable areas. Two similar sensor systems are described in this paper. The first system operates at 1310nm laser wavelength and is capable of measuring approximately 300 A - 300 kA, a 60 dB range. Laboratory validation results of aircraft lighting direct and in-direct effect current amplitudes are reported for this sensor. The second system operates at 1550nm wavelength and can measure about 400 A - 400 kA. Triggered-lightning measurement data are presented for this system. Good results are achieved in all cases

Fiber-Optic Current Sensor Validation with Triggered Lightning Measurements

A fiber optic current sensor based on the Faraday Effect is developed that is highly suitable for aircraft installation and can measure total current enclosed in a fiber loop down to DC. Other attributes include being small, light-weight, non-conducting, safe from electromagnetic interference, and free of hysteresis and saturation. The Faraday Effect causes light polarization to rotate when exposed to a magnetic field in the direction of light propagation. Measuring the induced light polarization rotation in fiber loops yields the total current enclosed. Two sensor systems were constructed and installed at Camp Blanding, Florida, measuring rocket-triggered lightning. The systems were similar in design but with different laser wavelengths, sensitivities and ranges. Results are compared to a shunt resistor as reference. The 850nm wavelength system tested in summer 2011 showed good result comparison early. However, later results showed gradual amplitude increase with time, attributed to corroded connections affecting the 50-ohm output termination. The 1550nm system also yielded good results in the summer 2012. The successful measurements demonstrate the fiber optic sensor's accuracies in capturing real lightning currents, and represent an important step toward future aircraft installation

Capsid Structure of dsRNA Fungal Viruses

Most fungal, double-stranded (ds) RNA viruses lack an extracellular life cycle stage and are transmitted by cytoplasmic interchange. dsRNA mycovirus capsids are based on a 120-subunit T = 1 capsid, with a dimer as the asymmetric unit. These capsids, which remain structurally undisturbed throughout the viral cycle, nevertheless, are dynamic particles involved in the organization of the viral genome and the viral polymerase necessary for RNA synthesis. The atomic structure of the T = 1 capsids of four mycoviruses was resolved: the L-A virus of Saccharomyces cerevisiae (ScV-L-A), Penicillium chrysogenum virus (PcV), Penicillium stoloniferum virus F (PsV-F), and Rosellinia necatrix quadrivirus 1 (RnQV1). These capsids show structural variations of the same framework, with 60 asymmetric or symmetric homodimers for ScV-L-A and PsV-F, respectively, monomers with a duplicated similar domain for PcV, and heterodimers of two different proteins for RnQV1. Mycovirus capsid proteins (CP) share a conserved α-helical domain, although the latter may carry different peptides inserted at preferential hotspots. Insertions in the CP outer surface are likely associated with enzymatic activities. Within the capsid, fungal dsRNA viruses show a low degree of genome compaction compared to reoviruses, and contain one to two copies of the RNA-polymerase complex per virion

A protein with simultaneous capsid scaffolding and dsRNA-binding activities enhances the birnavirus capsid mechanical stability

Viral capsids are metastable structures that perform many essential processes; they also act as robust cages during the extracellular phase. Viruses can use multifunctional proteins to optimize resources (e.g., VP3 in avian infectious bursal disease virus, IBDV). The IBDV genome is organized as ribonucleoproteins (RNP) of dsRNA with VP3, which also acts as a scaffold during capsid assembly. We characterized mechanical properties of IBDV populations with different RNP content (ranging from none to four RNP). The IBDV population with the greatest RNP number (and best fitness) showed greatest capsid rigidity. When bound to dsRNA, VP3 reinforces virus stiffness. These contacts involve interactions with capsid structural subunits that differ from the initial interactions during capsid assembly. Our results suggest that RNP dimers are the basic stabilization units of the virion, provide better understanding of multifunctional proteins, and highlight the duality of RNP as capsidstabilizing and genetic information platformsThis work was supported by grants from the Spanish Ministry of Economy and Competitivity (FIS2011-29493 to PJP, BFU2011-29038 to JLC and BFU2014-55475R to JRC) and Comunidad Autónoma de Madrid (S2013/MIT-2850 to JLC and S2013/MIT-2807 to JRC

Castillejo del Bonete (Terrinches, Ciudad Real): un complejo tumular prehistórico de la Cultura de las Motillas en el Alto Guadalquivir

Situado en las estribaciones orientales de Sierra Morena, dentro de la cuenca hidrológica del Guadalquivir, Castillejo del Bonete es un gran complejo arquitectónico que consta de una cueva monumentalizada mediante estructuras varias, entre las que destacan varios corredores megalíticos y túmulos, todos ellos asociados a contextos funerarios y depósitos de ofrendas. El presente artículo se centra en la explicación detallada de los elementos que integran este complejo constructivo para posteriormente discutir el avance que supone para la investigación de la Prehistoria Reciente en La Mancha. Castillejo del Bonete tiene el potencial de convertirse en un yacimiento clave para la comprensión de las prácticas funerarias y la creciente jerarquización social durante el tránsito del III al II milenios cal ANE

Chemical, Thermal and Spectroscopic Methods to Assess Biodegradation of Winery-Distillery Wastes during Composting

The objective of this work was to study the co-composting process of wastes from the winery and distillery industry with animal manures, using the classical chemical methods traditionally used in composting studies together with advanced instrumental methods (thermal analysis, FT-IR and CPMAS 13C NMR techniques), to evaluate the development of the process and the quality of the end-products obtained. For this, three piles were elaborated by the turning composting system, using as raw materials winery-distillery wastes (grape marc and exhausted grape marc) and animal manures (cattle manure and poultry manure). The classical analytical methods showed a suitable development of the process in all the piles, but these techniques were ineffective to study the humification process during the composting of this type of materials. However, their combination with the advanced instrumental techniques clearly provided more information regarding the turnover of the organic matter pools during the composting process of these materials. Thermal analysis allowed to estimate the degradability of the remaining material and to assess qualitatively the rate of OM stabilization and recalcitrant C in the compost samples, based on the energy required to achieve the same mass losses. FT-IR spectra mainly showed variations between piles and time of sampling in the bands associated to complex organic compounds (mainly at 1420 and 1540 cm-1) and to nitrate and inorganic components (at 875 and 1384 cm-1, respectively), indicating composted material stability and maturity; while CPMAS 13C NMR provided semi-quantitatively partition of C compounds and structures during the process, being especially interesting their variation to evaluate the biotransformation of each C pool, especially in the comparison of recalcitrant C vs labile C pools, such as Alkyl /O-Alkyl ratio.This work was supported by a contract to MABM, Spanish Ministry of Economy and Competitiveness (Plan Nacional de Investigación Científica, Desarrollo e Innovación Tecnológica (I+D+i) 2008-2011), co-funded by the EU through the Social Funds (contract reference PTQ-12-05655)