The risk of misclassifying subjects within principal component based asset index.

The asset index is often used as a measure of socioeconomic status in empirical research as an explanatory variable or to control confounding. Principal component analysis (PCA) is frequently used to create the asset index. We conducted a simulation study to explore how accurately the principal component based asset index reflects the study subjects' actual poverty level, when the actual poverty level is generated by a simple factor analytic model. In the simulation study using the PC-based asset index, only 1% to 4% of subjects preserved their real position in a quintile scale of assets; between 44% to 82% of subjects were misclassified into the wrong asset quintile. If the PC-based asset index explained less than 30% of the total variance in the component variables, then we consistently observed more than 50% misclassification across quintiles of the index. The frequency of misclassification suggests that the PC-based asset index may not provide a valid measure of poverty level and should be used cautiously as a measure of socioeconomic status

Isolation and screening of some medically important fungi from indoor environment: Studying the effect of some environmental and chemical factors on their growth and spore adhesion

Isolation of some pathogenic fungi from indoor environment that may cause diseases to athletes was the goal of this work. The effect of different cloth materials and some environmental factors on the growth and adhesion of the isolated fungi as Aspergillus sydowii, Cochliobolus hawaiiensis, Cochliobolus lunatus, Epicoccum nigrum, Nigrospora oryzae, Penicillium aurantiogriseum, Cladosporium sphaerospermum, Aspergillus niger, Cochliobolus australiensis, Stemphylium botryosum, Alternaria. alternata, Fusarium chlamydosporum, Aspergillus flavus and Aspergillus versicolor was investigated. By studying the effect of different cloth materials, at temperatures (18, 25 and 35°C) and at pH values (4, 5.6, 8), it was concluded that cloth material, 74% cotton - 25% polyester- 1% elasthan (C.P.E) was the lowest in susceptibility to fungal attack. The fungal pathogens growth was favored at 35°C and pH 8 after two days of incubation while, after five days the growth was favored at 25 and 35°C at pH 5.6 and pH 8. Alter. alternata and A. flavus were selected for studying their spore adhesion on different cloth material samples. Also, their sensitivity for detergents and drugs on different cloth material samples was carried out.Key words: Pathogenic fungi, athletes, fungal adhesion, antimicrobial activity

Rapid reduction of arsenate in the medium mediated by plant roots

Microbes detoxify arsenate by reduction and efflux of arsenite. Plants have a high capacity to reduce arsenate, but arsenic efflux has not been reported. Tomato (Lycopersicon esculentum) and rice (Oryza sativa) were grown hydroponically and supplied with 10 mu M marsenate or arsenite, with or without phosphate, for 1-3 d. The chemical species of As in nutrient solutions, roots and xylem sap were monitored, roles of microbes and root exudates in As transformation were investigated and efflux of As species from tomato roots was determined. Arsenite remained stable in the nutrient solution, whereas arsenate was rapidly reduced to arsenite. Microbes and root exudates contributed little to the reduction of external arsenate. Arsenite was the predominant species in roots and xylem sap. Phosphate inhibited arsenate uptake and the appearance of arsenite in the nutrient solution, but the reduction was near complete in 24 h in both -P- and +P-treated tomato. Phosphate had a greater effect in rice than tomato. Efflux of both arsenite and arsenate was observed; the former was inhibited and the latter enhanced by the metabolic inhibitor carbonylcyanide m-chlorophenylhydrazone. Tomato and rice roots rapidly reduce arsenate to arsenite, some of which is actively effluxed to the medium. The study reveals a new aspect of As metabolism in plants

Identification of QTLs for Arsenic Accumulation in Maize (Zea mays L.) Using a RIL Population

The Arsenic (As) concentration in different tissues of maize was analyzed using a set of RIL populations derived from an elite hybrid, Nongda108. The results showed that the trend of As concentration in the four measured tissues was leaves>stems>bracts>kernels. Eleven QTLs for As concentration were detected in the four tissues. Three QTLs for As concentration in leaves were mapped on chromosomes 1, 5, and 8, respectively. For As concentration in the bracts, two QTLs were identified, with 9.61% and 10.03% phenotypic variance. For As concentration in the stems, three QTLs were detected with 8.24%, 14.86%, and 15.23% phenotypic variance. Three QTLs were identified for kernels on chromosomes 3, 5, and 7, respectively, with 10.73%, 8.52%, and 9.10% phenotypic variance. Only one common chromosomal region between SSR marker bnlg1811 and umc1243 was detected for QTLs qLAV1 and qSAC1. The results implied that the As accumulation in different tissues in maize was controlled by different molecular mechanism. The study demonstrated that maize could be a useful plant for phytoremediation of As-contaminated paddy soil, and the QTLs will be useful for selecting inbred lines and hybrids with low As concentration in their kernels

Genotypic differences in shoot silicon content and the impact on grain arsenic accumulation in rice

Silicon in rice has been demonstrated to be involved in resistance to lodging, tolerance to both drought and salinity, and also enhances resistance to pests and diseases. The aim of this study was to determine the range of silicon content in a set of rice (Oryza sativa L.) accessions, and to determine if the natural variation of shoot silicon is linked to the previously identified silicon transporters (Lsi genes). Silicon content was determined in 50 field-grown accessions, representing all sub-populations of rice, with all accessions being genotyped with 700K SNPs. SNPs within 10 kb of the Lsi genes were examined to determine if any were significantly linked with the phenotypic variation. An XRF method of silicon determination compared favourably with digestion and colorimetric analysis. There were significant genotypic differences in shoot silicon ranging from 16.5 – 42.4 mg g-1 of plant dry weight, there was no significant difference between the rice sub-populations. Plants with different alleles for SNPs representing Lsi2 and Lsi3 were significantly different for shoot silicon content. Shoot silicon correlated negatively with grain arsenic in the tropical and temperate japonica sub-population, suggesting that accessions with high shoot silicon have reduced grain arsenic. This study indicates that alleles for Lsi genes are excellent candidate genes for further study to explain the natural variation of shoot silicon in rice

Electrodeposition of Protocrystalline Germanium from Supercritical Difluoromethane

We report results for the electrochemistry of the germanium(II) tri-halide anions, [GeCl3]?, [GeBr3]? and [GeI3]?, in supercritical difluoromethane containing 60?mm [NnBu4][BF4] at 19.1?MPa and 358?K. The voltammetry shows mass-transport-limited currents for reduction to germanium at gold on the first scan. There is no evidence of a germanium stripping peak and, on subsequent scans, the electrode slowly passivates with the deposition of approximately 0.4??m of material. The redox potentials for the reduction of the three tri-halides are in the order [GeCl3]? <[GeBr3]? <[GeI3]?, with the iodide being the most easily reduced complex. Electrodeposition of germanium onto TiN electrodes from supercritical difluoromethane at 19.1?MPa and 358?K, using either 16?mm [EMIM][GeI3] with 60?mm [EMIM][BF4] or 16?mm [NnBu4][GeI3] with 60?mm [NnBu4][BF4], gave deposition rates of 2–3??m?h?1. Raman spectroscopy and transmission electron microscopy showed that the resulting germanium films were protocrystalline, containing nanocrystals of germanium embedded in an amorphous germanium matri

Vitamin D Receptor Deficiency and Low Vitamin D Diet Stimulate Aortic Calcification and Osteogenic Key Factor Expression in Mice

Low levels of 25-hydroxy vitamin D (25(OH)D) are associated with cardiovascular diseases. Herein, we tested the hypothesis that vitamin D deficiency could be a causal factor in atherosclerotic vascular changes and vascular calcification. Aortic root sections of vitamin D receptor knockout (VDR−/−) mice that were stained for vascular calcification and immunostained for osteoblastic differentiation factors showed more calcified areas and a higher expression of the osteogenic key factors Msx2, Bmp2, and Runx2 than the wild-type mice (P<0.01). Data from LDL receptor knockout (LDLR−/−) mice that were fed western diet with either low (50 IU/kg), recommended (1,000 IU/kg), or high (10,000 IU/kg) amounts of vitamin D3 over 16 weeks revealed increasing plasma concentrations of 25(OH)D (P<0.001) with increasing intake of vitamin D, whereas levels of calcium and phosphorus in plasma and femur were not influenced by the dietary treatment. Mice treated with the low vitamin D diet had more calcified lesions and a higher expression of Msx2, Bmp2, and Runx2 in aortic roots than mice fed recommended or high amounts of vitamin D (P<0.001). Taken together, these findings indicate vitamin D deficiency as a risk factor for aortic valve and aortic vessel calcification and a stimulator of osteogenic key factor expression in these vascular areas