Mapping of serum amylase-1 and quantitative trait loci for milk production traits to cattle chromosome 4

The present study was undertaken to confirm and refine the mapping of a quantitative trait locus in cattle for milk fat percentage that had earlier been reported to be linked to the serum amylase-1 locus, AM1. Five half-sib families from the previous study and 7 new ones were genotyped for nine microsatellite markers spanning chromosome 4. AM1 was mapped between the microsatellite markers BMS648 and BR6303. In a granddaughter design, interval mapping based on multiple-marker regression was utilized for an analysis of five milk production traits: milk yield, fat percentage and yield, and protein percentage and yield. In the families reported on previously, significant effects for fat and protein percentages were detected. In the new families, an effect on milk and fat yields was found. The most likely positions of the quantitative trait locus in both groups of families were in the same area of chromosome 4 in the vicinity of the obese locus. Direct effects of the obese locus were tested for using polymorphism in two closely linked microsatellites located 2.5 and 3.6 top downstream of the coding sequence. No firm evidence was found for an association between the obese locus and the tested traits

Capacity building for sustainable use of animal genetic resources in developing countries. ILRI-SLU Project progress report for the period 1999-2003

To promote a sustainable and improved use of animal genetic resources in developing countries, ILRI in collaboration with the Swedish University of Agricultural Sciences (SLU), and supported by Sida (Sweden), launched a project training the trainers, for national agricultural research systems (NABS) scientists (national university teachers and researchers) in developing countries. The main objectives of the project were to strengthen subject knowledge and skills, and teaching and communication skills of scientists teaching and supervising students in animal breeding and genetics at least up to MSc level. Other objectives were to catalyse curriculum development, stimulate contacts and networking, and to develop computer-based training resources relevant for use by NARS scientists in teaching and research. This capacity building project was an integrated component of the ILRI research agenda on Animal Genetic Resources. It was also an endeavour by ILRI to collaborate with and strengthen NARS institutions and scientists. The project was initially planned to include regions in sub-Saharan Africa, SouthEast Asia and South Asia, resources allowing, Latin America. The activities in each region or sub-region included: planning activities (questionnaire, country visits, planning workshop), training course for university teachers and researchers (three weeks, combining training in animal genetics/breeding and teaching methodologies), development of an Animal Genetics Training Resource' (on CD-ROM, and later also on the Web), follow-up activities, including impact assessment (questionnaires and follow-up workshops). During the period 1999 to 2003 a full round of activities was completed for sub Saharan Africa. The training course was conducted for Eastern/Southern Africa (20 scientists from 10 countries) and for Western/Central Africa (18 scientists from 10 countries). The planning and follow-up workshops were performed jointly for the region. In addition, the planning activities and training course (18 scientists from 9 countries) were completed for South-East Asia. Version 1 of the computer-based training resource (CD) was released in late 2003. The resource contains modules, i.e. core texts on issues related with farm animal genetic resources, quantitative methods and teaching methods, and Resources containing case studies, breed information, maps, examples, exercises, video clips, a glossary and a virtual library. It also contains references to web links, books and other CDs. The participants found the training courses very useful; average score for Overall Impression was 8.2 (scale 1-9). They also indicated that the computer-based training resource would be a valuable tool both in teaching and in research, but had not yet had a chance to explore and use it fully. Impact assessments for Africa (questionnaire and follow-up workshop) showed that the training course has already had a substantial impact in many of the participants. Impact assessments for Africa (questionnaire and follow-up workshop) showed that the training course has already had a substantial impact in many of the participants' home institutions, both on teaching methods and on course content. Students have shown more interest and understanding of animal breeding and genetics. The impact on participants' research has been just as large; more focus on research involving indigenous animal genetic resources, improved research proposal writing, research methodologies and science communication skills, and also more efficient supervision of students' research. Many of the participants have actively disseminated materials and experiences from the course to colleagues in their home institutions. Other important outcomes have been increased contacts and an open e-mail network `Afrib' formed by the African course participants. The project also strengthened Swedish knowledge and expanded PhD activities on animal genetic resources in developing countries; these were valuable `spin-off effects' of the project. The 'training the trainers' approach adopted in the ILRI-SLU project seems to be a good model for effective capacity building to promote a sustainable use of animal genetic resources in developing countries. The approach was innovative and has functioned well; the model could be extended to other disciplines. Furthermore, linking universities from the North to those of the South, with a CGIAR institute playing both a facilitating and catalytic role was beneficial. The project will now proceed to South Asia and version 2 of the computer-based training resource will be developed. More impact analyses will also be performed

Linking the Resource Description Framework to cheminformatics and proteochemometrics

<p>Abstract</p> <p>Background</p> <p>Semantic web technologies are finding their way into the life sciences. Ontologies and semantic markup have already been used for more than a decade in molecular sciences, but have not found widespread use yet. The semantic web technology Resource Description Framework (RDF) and related methods show to be sufficiently versatile to change that situation.</p> <p>Results</p> <p>The work presented here focuses on linking RDF approaches to existing molecular chemometrics fields, including cheminformatics, QSAR modeling and proteochemometrics. Applications are presented that link RDF technologies to methods from statistics and cheminformatics, including data aggregation, visualization, chemical identification, and property prediction. They demonstrate how this can be done using various existing RDF standards and cheminformatics libraries. For example, we show how IC₅₀ and K<it>_i</it> values are modeled for a number of biological targets using data from the ChEMBL database.</p> <p>Conclusions</p> <p>We have shown that existing RDF standards can suitably be integrated into existing molecular chemometrics methods. Platforms that unite these technologies, like Bioclipse, makes this even simpler and more transparent. Being able to create and share workflows that integrate data aggregation and analysis (visual and statistical) is beneficial to interoperability and reproducibility. The current work shows that RDF approaches are sufficiently powerful to support molecular chemometrics workflows.</p

Strong signatures of selection in the domestic pig genome

Domestication of wild boar (Sus scrofa) and subsequent selection have resulted in dramatic phenotypic changes in domestic pigs for a number of traits, including behavior, body composition, reproduction, and coat color. Here we have used whole-genome resequencing to reveal some of the loci that underlie phenotypic evolution in European domestic pigs. Selective sweep analyses revealed strong signatures of selection at three loci harboring quantitative trait loci that explain a considerable part of one of the most characteristic morphological changes in the domestic pig—the elongation of the back and an increased number of vertebrae. The three loci were associated with the NR6A1, PLAG1, and LCORL genes. The latter two have repeatedly been associated with loci controlling stature in other domestic animals and in humans. Most European domestic pigs are homozygous for the same haplotype at these three loci. We found an excess of derived nonsynonymous substitutions in domestic pigs, most likely reflecting both positive selection and relaxed purifying selection after domestication. Our analysis of structural variation revealed four duplications at the KIT locus that were exclusively present in white or white-spotted pigs, carrying the Dominant white, Patch, or Belt alleles. This discovery illustrates how structural changes have contributed to rapid phenotypic evolution in domestic animals and how alleles in domestic animals may evolve by the accumulation of multiple causative mutations as a response to strong directional selection

Весовые соотношения тимуса и надпочечников у антенатально погибших плодов

ТИМУСНАДПОЧЕЧНИКИтимомегалиядети первого года жизнидети раннего возрастаМЛАДЕНЕЦ, СМЕРТНОСТЬЭНДОКРИННОЙ СИСТЕМЫ БОЛЕЗНИСМЕРТНОСТЬ ДЕТСКАЯсиндром внезапной детской смерт