136 research outputs found
TabAttention: Learning Attention Conditionally on Tabular Data
Medical data analysis often combines both imaging and tabular data processing
using machine learning algorithms. While previous studies have investigated the
impact of attention mechanisms on deep learning models, few have explored
integrating attention modules and tabular data. In this paper, we introduce
TabAttention, a novel module that enhances the performance of Convolutional
Neural Networks (CNNs) with an attention mechanism that is trained
conditionally on tabular data. Specifically, we extend the Convolutional Block
Attention Module to 3D by adding a Temporal Attention Module that uses
multi-head self-attention to learn attention maps. Furthermore, we enhance all
attention modules by integrating tabular data embeddings. Our approach is
demonstrated on the fetal birth weight (FBW) estimation task, using 92 fetal
abdominal ultrasound video scans and fetal biometry measurements. Our results
indicate that TabAttention outperforms clinicians and existing methods that
rely on tabular and/or imaging data for FBW prediction. This novel approach has
the potential to improve computer-aided diagnosis in various clinical workflows
where imaging and tabular data are combined. We provide a source code for
integrating TabAttention in CNNs at
https://github.com/SanoScience/Tab-Attention.Comment: Accepted for the 26th International Conference on Medical Image
Computing and Computer Assisted Intervention (MICCAI) 202
Fragmentation in Peripheral Heavy-Ion Collisions: from Neck Emission to Spectator Decays
Invariant cross sections of intermediate mass fragments in peripheral
collisions of Au on Au at incident energies between 40 and 150 AMeV have been
measured with the 4-pi multi-detector INDRA. The maximum of the fragment
production is located near mid-rapidity at the lower energies and moves
gradually towards the projectile and target rapidities as the energy is
increased. Schematic calculations within an extended Goldhaber model suggest
that the observed cross-section distributions and their evolution with energy
are predominantly the result of the clustering requirement for the emerging
fragments and of their Coulomb repulsion from the projectile and target
residues. The quantitative comparison with transverse energy spectra and
fragment charge distributions emphasizes the role of hard scattered nucleons in
the fragmentation process.Comment: 5 pages, 5 eps figures, RevTeX4, submitted to Phys. Lett.
Statistical Multifragmentation of Non-Spherical Expanding Sources in Central Heavy-Ion Collisions
We study the anisotropy effects measured with INDRA at GSI in central
collisions of Xe+Sn at 50 A.MeV and Au+Au at 60, 80, 100 A.MeV incident energy.
The microcanonical multifragmentation model with non-spherical sources is used
to simulate an incomplete shape relaxation of the multifragmenting system. This
model is employed to interpret observed anisotropic distributions in the
fragment size and mean kinetic energy. The data can be well reproduced if an
expanding prolate source aligned along the beam direction is assumed. An either
non-Hubblean or non-isotropic radial expansion is required to describe the
fragment kinetic energies and their anisotropy. The qualitative similarity of
the results for the studied reactions suggests that the concept of a
longitudinally elongated freeze-out configuration is generally applicable for
central collisions of heavy systems. The deformation decreases slightly with
increasing beam energy.Comment: 35 pages, 19 figures, submitted to Nuclear Physics
Measurement of the Reaction in Search for the Recently Observed Resonance Structure in and systems
Exclusive measurements of the quasi-free reaction have
been performed by means of collisions at = 1.2 GeV using the WASA
detector setup at COSY. Total and differential cross sections have been
obtained covering the energy region = (2.35 - 2.46) GeV, which
includes the region of the ABC effect and its associated resonance structure.
No ABC effect, {\it i.e.} low-mass enhancement is found in the
-invariant mass spectrum -- in agreement with the constraint from
Bose statistics that the isovector pion pair can not be in relative s-wave. At
the upper end of the covered energy region -channel processes for Roper,
and excitations provide a reasonable description
of the data, but at low energies the measured cross sections are much larger
than predicted by such processes. Adding a resonance amplitude for the
resonance at =~2.37 GeV with =~70 MeV and observed
recently in and reactions leads to an
agreement with the data also at low energies
Charge Symmetry Breaking in dd->4He{\pi}0 with WASA-at-COSY
Charge symmetry breaking (CSB) observables are a suitable experimental tool
to examine effects induced by quark masses on the nuclear level. Previous high
precision data from TRIUMF and IUCF are currently used to develop a consistent
description of CSB within the framework of chiral perturbation theory. In this
work the experimental studies on the reaction dd->4He{\pi}0 have been extended
towards higher excess energies in order to provide information on the
contribution of p-waves in the final state. For this, an exclusive measurement
has been carried out at a beam momentum of p=1.2 GeV/c using the WASA-at-COSY
facility. The total cross section amounts to sigma(tot) = (118 +- 18(stat) +-
13(sys) +- 8(ext)) pb and first data on the differential cross section are
consistent with s-wave pion production.Comment: 14 pages, 5 figure
ABC Effect and Resonance Structure in the Double-Pionic Fusion to He
Exclusive and kinematically complete measurements of the double pionic fusion
to He have been performed in the energy region of the so-called ABC effect,
which denotes a pronounced low-mass enhancement in the -invariant mass
spectrum. The experiments were carried out with the WASA detector setup at
COSY. Similar to the observations in the basic reaction
and in the He reaction, the data reveal a correlation
between the ABC effect and a resonance-like energy dependence in the total
cross section. Differential cross sections are well described by the hypothesis
of resonance formation during the reaction process in addition to the
conventional -channel mechanism. The deduced resonance
width can be understood from collision broadening due to Fermi motion of the
nucleons in initial and final nuclei
Neutron-Proton Scattering in the Context of the (2380) Resonance
New data on quasifree polarized neutron-proton scattering, in the region of
the recently observed resonance structure, have been obtained by
exclusive and kinematically complete high-statistics measurements with WASA at
COSY. This paper details the determination of the beam polarization, checks of
the quasifree character of the scattering process, on all obtained
angular distributions and on the new partial-wave analysis, which includes the
new data producing a resonance pole in the - coupled partial
waves at () MeV -- in accordance with the dibaryon
resonance hypothesis. The effect of the new partial-wave solution on the
description of total and differential cross section data as well as specific
combinations of spin-correlation and spin-transfer observables available from
COSY-ANKE measurements at = 2.27 GeV is discussed
Search for a dark photon in the decay
The presently world largest data sample of pi0 --> gamma e+e- decays
containing nearly 5E5 events was collected using the WASA detector at COSY. A
search for a dark photon U produced in the pi0 --> gamma U --> gamma e+e- decay
from the pp-->pp\pi^0 reaction was carried out. An upper limit on the square of
the U-gamma mixing strength parameter epsilon^2 of 5e-6 at 90% CL was obtained
for the mass range 20 MeV <M_U< 100 MeV. This result together with other recent
experimental limits significantly reduces the M_U vs. \epsilon^2 parameter
space preferred by the measured value of the muon anomalous magnetic moment.Comment: 16 pages, 8 figures; improved analysis extending the exclusion region
to 20 MeV<M_U< 100 MeV; implemented changes requested by referee
Evidence for a New Resonance from Polarized Neutron-Proton Scattering
Exclusive and kinematically complete high-statistics measurements of
quasifree polarized scattering have been performed in the energy
region of the narrow resonance structure with , 2380 MeV/ and 70 MeV observed recently in the
double-pionic fusion channels and .
The experiment was carried out with the WASA detector setup at COSY having a
polarized deuteron beam impinged on the hydrogen pellet target and utilizing
the quasifree process . That way the
analyzing power was measured over a large angular range. The obtained
angular distributions deviate systematically from the current SAID SP07
NN partial-wave solution. Incorporating the new data into the SAID
analysis produces a pole in the waves as expected from the
resonance hypothesis
Examining the distribution and impact of single nucleotide polymorphisms in the capsular locus of Streptococcus pneumoniae serotype 19A
Streptococcus pneumoniae serotype 19A prevalence has increased after implementation of PCV7 and PCV10 vaccines. In this study, we have provided, with high accuracy, the genetic diversity of the 19A serotype in a cohort of Dutch invasive pneumococcal disease patients and asymptomatic carriers obtained in the period 2004-2016. Whole genomes of the 338 pneumococcal isolates in this cohort were sequenced and their capsule (cps) loci compared to examine the diversity and determine the impact on the production of CPS sugar precursors and CPS shedding. We discovered 79 types with a unique CPS locus sequence. Most variation was observed in the rmlB and rmlD genes of the TDP-Rha synthesis pathway, and in the wzg gene, of unknown function. Interestingly, gene variation in the cps locus was conserved in multiple alleles. Using RmlB and RmlD protein models, we predict that enzymatic function is not affected by the single nucleotide polymorphisms as identified. To determine if RmlB and RmlD function was affected, we analyzed nucleotide sugar levels using UHPLC-MS. CPS precursors differed between 19A cps locus subtypes, including TDP-Rha, but no clear correlation was observed. Also, a significant difference in multiple nucleotide sugar levels was observed between phylogenetically branched groups. Because of indications of a role for Wzg in capsule shedding, we analyzed if this was affected. No clear indication of a direct role in shedding was found. We thus describe genotypic variety in rmlB, rmlD and wzg in serotype 19A the Netherlands, for which we have not discovered an associated phenotype
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