A biological survey of the Blakeney Freshes: North Norfolk

Blakeney Freshes in an area of low-lying grazing marsh on the North Norfolk coast, formed by the reclamation of salt marshes behind Blakeney spit (Figures 1 & 2). The area has long been recognised for its conservation value and was identified by Ratcliffe (1977) to be a Grade 1 site in the Nature Conservation Review. Reid et al. (1989) reiterated this describing the site as being of “key importance” due to it comprising of one of the most extensive areas of oligohaline-mesohaline grazing marsh in Norfolk. The marshes are particularly noted for a range of wintering and breeding birds, but also for the aquatic flora and fauna which inhabit the 25 km of drainage ditches that form a network across the site (Foster & Jackson 2000)

Laboratory Astrophysics White Paper (based on the 2010 NASA Laboratory Astrophysics Workshop in Gatlinberg, Tennessee, 25-28 October 2010)

The purpose of the 2010 NASA Laboratory Astrophysics Workshop (LAW) was, as given in the Charter from NASA, "to provide a forum within which the scientific community can review the current state of knowledge in the field of Laboratory Astrophysics, assess the critical data needs of NASA's current and future Space Astrophysics missions, and identify the challenges and opportunities facing the field as we begin a new decade". LAW 2010 was the fourth in a roughly quadrennial series of such workshops sponsored by the Astrophysics Division of the NASA Science Mission Directorate. In this White Paper, we report the findings of the workshop

Molecular environment and thermal X-ray spectroscopy of the semicircular young composite supernova remnant 3C 396

We have investigated the molecular environment of the semicircular composite supernova remnant (SNR) 3C396 and performed a Chandra spatially resolved thermal X-ray spectroscopic study of this young SNR. With our CO millimeter observations, we find that the molecular clouds (MCs) at V(LSR)~84km/s can better explain the multiwavelength properties of the remnant than the V(LSR)=67-72km/s MCs that are suggested by Lee et al. (2009). At around 84km/s, the western boundary of the SNR is perfectly confined by the western molecular wall. The CO emission fades out from west to east, indicating that the eastern region is of low gas density. In particular, an intruding finger/pillar-like MC, which may be shocked at the tip, can well explain the X-ray and radio enhancement in the southwest and some infrared filaments there. The SNR-MC interaction is also favored by the relatively elevated 12CO J=2-1/J=1-0 line ratios in the southwestern "pillar tip" and the molecular patch on the northwestern boundary. The redshifted 12CO (J=1-0 and J=2-1) wings (86-90km/s) of an eastern 81km/s molecular patch may be the kinematic evidence for shock-MC interaction. We suggest that the 69km/s MCs are in the foreground based on HI self-absorption while the 84km/s MCs at a distance of 6.2 kpc (the tangent point) are in physical contact with SNR 3C396. The X-ray spectral analysis suggests an SNR age of ~3kyr. The metal enrichment of the X-ray emitting gas in the north and south implies a 13-15Msun B1-B2 progenitor star.Comment: 17 amulateapj pages, including 11 figures and 3 tables. Accepted to ApJ. Version 2: minor correction

Design and performance evaluation of bitwise retransmission schemes in wireless sensor networks

The previously proposed bitwise retransmission schemes which retransmit only selected bits to accumulate their reliability are designed and evaluated. Unlike conventional automatic repeat request (ARQ) schemes, the bitwise retransmission schemes do not require a checksum for error detection. The bitwise retransmission decisions and combining can be performed either after demodulation of the received symbols or after channel decoding. The design and analysis assume error-free feedback, however, the impact of feedback errors is also considered. The bit-error rate (BER) expressions are derived and verified by computer simulations in order to optimize the parameters of the retransmission schemes. The BER performance of coded and uncoded bitwise retransmissions is compared with a hybrid ARQ (HARQ) scheme over additive white Gaussian noise (AWGN), slow fading, and fast fading channels. It is shown that bitwise retransmissions outperform block repetition coding (BRC) over AWGN channels. In addition, the selection diversity created by the bitwise retransmissions can outperform the HARQ at large signal-to-noise ratio (SNR) over fast fading channels. Finally, the practical design of a bitwise retransmission protocol for data fusion in wireless sensor networks is presented assuming Zigbee, WiFi and Bluetooth system parameters

Is early center-based child care associated with tantrums and unmanageable behavior over time up to school entry?

Background. Existing research suggests that there is a relationship between greater exposure to center-based child care and child behavioral problems though the mechanism for the impact is unclear. However the measure used to document child care has usually been average hours, which may be particularly unreliable in the early months when fewer children are in center care. In addition individual trajectories for behavior difficulties have not been studied. Objective. The purpose of the current study was to examine whether the extent of exposure to center-based child care before two years predicted the trajectory of children’s difficult behavior (i.e., tantrums and unmanageable behavior) from 30 to 51 months controlling for child and maternal characteristics. Method. Data were drawn from UK-based Families, Children and Child Care (FCCC) study (n=1201). Individual growth models were fitted to test the relation between early center-based child care experiences and subsequent difficult behavior. Results. Children with more exposure to center-based care before two had less difficult behavior at 30 months, but more increase over time. Initial levels were predicted by higher difficult temperament and lower verbal ability. Higher difficult temperament and lower family socio-economic status predicted its change over time. Conclusion. Findings suggest that early exposure to center-based care before two years old is a risk factor for subsequent behavior problems especially when children have a longer period of exposure. A possible explanatory process is that child coping strategies to manage frustration are less well developed in a group context, especially when they lag behind in expressive language

A tutorial on pilot studies: the what, why and how

Pilot studies for phase III trials - which are comparative randomized trials designed to provide preliminary evidence on the clinical efficacy of a drug or intervention - are routinely performed in many clinical areas. Also commonly know as "feasibility" or "vanguard" studies, they are designed to assess the safety of treatment or interventions; to assess recruitment potential; to assess the feasibility of international collaboration or coordination for multicentre trials; to increase clinical experience with the study medication or intervention for the phase III trials. They are the best way to assess feasibility of a large, expensive full-scale study, and in fact are an almost essential pre-requisite. Conducting a pilot prior to the main study can enhance the likelihood of success of the main study and potentially help to avoid doomed main studies. The objective of this paper is to provide a detailed examination of the key aspects of pilot studies for phase III trials including: 1) the general reasons for conducting a pilot study; 2) the relationships between pilot studies, proof-of-concept studies, and adaptive designs; 3) the challenges of and misconceptions about pilot studies; 4) the criteria for evaluating the success of a pilot study; 5) frequently asked questions about pilot studies; 7) some ethical aspects related to pilot studies; and 8) some suggestions on how to report the results of pilot investigations using the CONSORT format

PLANCK COLD CLUMPS IN THE lambda ORIONIS COMPLEX. I. DISCOVERY OF AN EXTREMELY YOUNG CLASS 0 PROTOSTELLAR OBJECT AND A PROTO-BROWN DWARF CANDIDATE IN THE BRIGHT-RIMMED CLUMP PGCC G192.32-11.88

We are performing a series of observations with ground-based telescopes toward Planck Galactic cold clumps (PGCCs) in the lambda Orionis complex in order to systematically investigate the effects of stellar feedback. In the particular case of PGCC G192.32-11.88, we discovered an extremely young Class 0 protostellar object (G192N) and a proto-brown dwarf candidate (G192S). G192N and G192S are located in a gravitationally bound brightrimmed clump. The velocity and temperature gradients seen in line emission of CO isotopologues indicate that PGCC G192.32-11.88 is externally heated and compressed. G192N probably has the lowest bolometric luminosity (similar to 0.8 L-circle dot) and accretion rate (6.3 x 10(-7) M-circle dot yr(-1)) when compared with other young Class 0 sources (e.g., PACS Bright Red Sources) in the Orion complex. It has slightly larger internal luminosity (0.21 +/- 0.01 L-circle dot) and outflow velocity (similar to 14 km s(-1)) than the predictions of first hydrostatic cores (FHSCs). G192N might be among the youngest Class 0 sources, which are slightly more evolved than an FHSC. Considering its low internal luminosity (0.08 +/- 0.01 L-circle dot) and accretion rate (2.8 x 10(-8) M-circle dot yr(-1)), G192S is an ideal proto-brown dwarf candidate. The star formation efficiency (similar to 0.3%-0.4%) and core formation efficiency (similar to 1%) in PGCC G192.32-11.88 are significantly smaller than in other giant molecular clouds or filaments, indicating that the star formation therein is greatly suppressed owing to stellar feedback.Peer reviewe

Risk factors for Epstein Barr virus-associated cancers: a systematic review, critical appraisal, and mapping of the epidemiological evidence

Background Epstein Barr Virus (EBV) infects 90%-95% of all adults globally and causes~1% of all cancers. Differing proportions of Burkitt’s lymphoma (BL), gastric carcinoma (GC), Hodgkin’s lymphoma (HL) and nasopharyngeal carcinoma (NPC) are associated with EBV. We sought to systematically review the global epidemiological evidence for risk factors that (in addition to EBV) contribute to the development of the EBV-associated forms of these cancers, assess the quality of the evidence, and compare and contrast the cancers. Methods MEDLINE, Embase and Web of Science were searched for studies of risk factors for EBV-associated BL, GC, HL and NPC without language or temporal restrictions. Studies were excluded if there was no cancer-free comparator group or where analyses of risk factors were inadequately documented. After screening and reference list searching, data were extracted into standardised spreadsheets and quality assessed. Due to heterogeneity, a narrative synthesis was undertaken. Results 9916 hits were retrieved. 271 papers were retained: two BL, 24 HL, one GC and 244 NPC. The majority of studies were from China, North America and Western Europe. Risk factors were categorised as dietary, environmental/non-dietary, human genetic, and infection and clinical. Anti-EBV antibody load was associated with EBV-associated GC and BL. Although the evidence could be inconsistent, HLA-A alleles, smoking, infectious mononucleosis and potentially other infections were risk factors for EBV-associated HL. Rancid dairy products; anti-EBV antibody and EBV DNA load; history of chronic ear, nose and/or throat conditions; herbal medicine use; family history; and human genetics were risk factors for NPC. Fresh fruit and vegetable and tea consumption may be protective against NPC. Conclusions Many epidemiological studies of risk factors in addition to EBV for the EBV-associated forms of BL, GC, HL and NPC have been undertaken, but there is a dearth of evidence for GC and BL. Available evidence is of variable quality. The aetiology of EBV-associated cancers likely results from a complex intersection of genetic, clinical, environmental and dietary factors, which is difficult to assess with observational studies. Large, carefully designed, studies need to be strategically undertaken to harmonise and clarify the evidence. Registration PROSPERO CRD4201705980

Next generation transcriptomes for next generation genomes using est2assembly

<p>Abstract</p> <p>Background</p> <p>The decreasing costs of capillary-based Sanger sequencing and next generation technologies, such as 454 pyrosequencing, have prompted an explosion of transcriptome projects in non-model species, where even shallow sequencing of transcriptomes can now be used to examine a range of research questions. This rapid growth in data has outstripped the ability of researchers working on non-model species to analyze and mine transcriptome data efficiently.</p> <p>Results</p> <p>Here we present a semi-automated platform '<it>est2assembly</it>' that processes raw sequence data from Sanger or 454 sequencing into a hybrid <it>de-novo </it>assembly, annotates it and produces GMOD compatible output, including a SeqFeature database suitable for GBrowse. Users are able to parameterize assembler variables, judge assembly quality and determine the optimal assembly for their specific needs. We used <it>est2assembly </it>to process <it>Drosophila </it>and <it>Bicyclus </it>public Sanger EST data and then compared them to published 454 data as well as eight new insect transcriptome collections.</p> <p>Conclusions</p> <p>Analysis of such a wide variety of data allows us to understand how these new technologies can assist EST project design. We determine that assembler parameterization is as essential as standardized methods to judge the output of ESTs projects. Further, even shallow sequencing using 454 produces sufficient data to be of wide use to the community. <it>est2assembly </it>is an important tool to assist manual curation for gene models, an important resource in their own right but especially for species which are due to acquire a genome project using Next Generation Sequencing.</p