A multi-approach survey as the most reliable tool to accurately assess biodiversity: an example of thai murine rodents

Wildlife surveys rely on an accurate taxonomic framework. Identification tools used to reach this goal are not equivalent and may depend on several objectives and constraints, including sampling conservation difficulties, the invasiveness of the sampling techniques, sampling capacity, the relevance of the results, materials needed, the cost and the user time required in the field and laboratory. This article presents and discusses the advantages and limits of each identification tool used in the Ceropath (Community ecology of rodents and their pathogens in South East Asia) program to reach a fast and relevant identification of the rodents sampled. It is concluded that there needs to be a combination of the results from different methods, including the most recent ones, to achieve an improvement in taxonomic identification

The effect of a centenary storm on the long-lived seagrass Posidonia oceanica

We used the disturbance resulting from a once in a 100‐yr storm on the northwest Mediterranean coast to examine the extent of the disturbance, the tolerance thresholds to burial, and the medium‐term response of the long‐lived Posidonia oceanica seagrass. Sediment burial at 12 surveyed areas was particularly strong in shallow meadows, with 23% of their surfaces buried, on average, under more than 10 cm of sediment. In contrast, less than 5% of the meadow was affected at deeper locations. At three sites, we tracked short‐term mortality along a gradient of sediment burial. Survival response to burial was clearly nonlinear, with a significant threshold at 4-5 cm, beyond which shoot mortality was 100%. To track medium‐term potential recovery, we established permanent plots subject to three sediment burial levels (0-5, 5-10, and > 10 cm burial) in four meadows. Where the initial shoot mortality was 100%, we recorded no shoot recovery over the 4‐yr period. In the remaining plots, where some shoots remained alive, we detected either further mortality or shoot recovery of 7% per year on average. Extreme storm events can result in sudden catastrophic losses of seagrass cover in shallow P. oceanica meadows. In the long term and due to the long return time of such storms, the species may still be able to recover despite its low recovery potential. However, added anthropogenic stressors, including climate change, may seriously test the ability of long‐lived shallow seagrass ecosystems to resist high‐intensity natural disturbances and may be critical for its persistence

Detecting the impacts of harbour construction on a seagrass habitat and its subsequent recovery

Managing coastal development requires a set of tools to adequately detect ecosystem and water column degradation, but it also demands tools to detect any post-disturbance improvement. Structural seagrass indicators (such as shoot density or cover) are often used to detect or assess disturbances, but while they may be very sensitive to the impact itself, it is unclear if those indicators on their own can effectively reflect recovery at time scales relevant to managers. We used the construction of a harbour affecting a nearby Posidonia oceanica seagrass community to test the ability of a set of indicators (structural and others) to detect alterations and to evaluate their sensitivity to recovery of environmental quality after harbour construction was complete and the disturbance ceased. We used a Beyond Before After Control Impact (BBACI) design to evaluate effects on one impacted and three control meadows where we used structural, morphological, community and physiological indicators (26 in total) to asses disturbance impacts. Additionally, we measured some of the potential environmental factors that could be altered during and after the construction of the harbour and are critical to the survival of the seagrass meadow (light, sediment organic matter, sediment accrual). Harbour construction caused a clear increase in sediment organic matter and in sediment deposition rates, especially fine sand. Light availability was also reduced due to suspended sediments. Sediment and light conditions returned to normal levels 5 and 15 months after the construction began. As expected, seagrass structural indicators responded unequivocally to these environmental changes, with clear reductions in shoot density. Additionally, reduced light conditions quickly resulted in a decline in carbohydrate content in affected meadows. Unexpectedly, we also recorded a significant increase in metal content in plant tissues. No response was detected in the physiological indicators related to eutrophication (e.g. N and P content in tissues) and in morphological (shoot biomass) and community (epiphyte biomass) indicators. More than three years after the completion of the harbour, structural indicators did not show any sign of recovery. In contrast, physiological indicators, mainly heavy metal and carbohydrates content, were much better in detecting the improvement of the environmental conditions over the fairly short period of this study. These results indicate that while structural indicators are critical to evaluate the immediate effect of disturbances and the recovery on impacted systems, specific physiological indicators may be much better suited to determining the timing of environmental quality recovery. The design of impact and monitoring protocols in the wake of coastal developmental projects need to consider the differential effectiveness and time-response of measured indicators carefully

Some recent developments in quantization of fractal measures

We give an overview on the quantization problem for fractal measures, including some related results and methods which have been developed in the last decades. Based on the work of Graf and Luschgy, we propose a three-step procedure to estimate the quantization errors. We survey some recent progress, which makes use of this procedure, including the quantization for self-affine measures, Markov-type measures on graph-directed fractals, and product measures on multiscale Moran sets. Several open problems are mentioned.Comment: 13 page

Differences in predator composition alter the direction of structure‐mediated predation risk in macrophyte communities

Structural complexity strongly influences the outcome of predator-prey interactions in benthic marine communities affecting both prey concealment and predator hunting efficacy. How habitat structure interacts with species‐specific differences in predatory style and antipredatory strategies may therefore be critical in determining higher trophic functions. We examined the role of structural complexity in mediating predator-prey interactions across several macrophyte habitats along a gradient of structural complexity in three different bioregions: western Mediterranean Sea (WMS), eastern Indian Ocean (EIO) and northern Gulf of Mexico (NGM). Using sea urchins as model prey, we measured survival rates of small (juveniles) and medium (young adults) size classes in different habitat zones: within the macrophyte habitat, along the edge and in bare sandy spaces. At each site we also measured structural variables and predator abundance. Generalised linear models identified biomass and predatory fish abundance as the main determinants of predation intensity but the efficiency of predation was also influenced by urchin size class. Interestingly though, the direction of structure‐mediated effects on predation risk was markedly different between habitats and bioregions. In WMS and NGM, where predation by roving fish was relatively high, structure served as a critical prey refuge, particularly for juvenile urchins. In contrast, in EIO, where roving fish predation was low, predation was generally higher inside structurally complex environments where sea stars were responsible for much of the predation. Larger prey were generally less affected by predation in all habitats, probably due to the absence of large predators. Overall, our results indicate that, while the structural complexity of habitats is critical in mediating predator-prey interactions, the direction of this mediation is strongly influenced by differences in predator composition. Whether the regional pool of predators is dominated by visual roving species or chemotactic benthic predators may determine if structure dampens or enhances the influence of top-down control in marine macrophyte communities

Uses and management of saltmarshes: A global survey

Saltmarshes are important coastal fringe ecosystems supporting a myriad of coastal uses and users. However, saltmarshes have undergone a significant period of global decline, losing 25%–50% of their coverage due to a range of drivers, but mainly as a result of anthropogenic pressures and land-use change. While the value of these coastal systems to society is recognised, global data are fragmented, patchy, and often restricted to local case studies. There is currently no comprehensive understanding of the global variation of ecosystem services, benefits and management practices available. This pioneering study addresses this by investigating the socio-ecological dimension of global variation in ecosystem service provision, and how this is being managed by and for different saltmarsh users. Through a global online questionnaire survey (n = 438) targeting professional saltmarsh researchers and practitioners representing 40 countries across 5 continents, this paper presents an overview of saltmarsh ecosystem services, key drivers influencing management and the variation in factors that influence them. Analysis indicates considerable variation, with geographical location (‘continent’) being the most common moderator, influencing perceptions of saltmarshes, the prioritisation of ecosystem services and management perceptions. Finally, the paper presents a series of recommendations, including the development of an interdisciplinary, international research programme to support restoration and conservation of saltmarshes worldwide

Carbon translocation from symbiont to host depends on irradiance and food availability in the tropical coral Stylophora pistillata

Reef-building corals live in symbiosis with dinoflagellates that translocate a large proportion of their photosynthetically fixed carbon compounds to their coral host for its own metabolism. The carbon budget and translocation rate, however, vary depending on environmental conditions, coral host species, and symbiont clade. To quantify variability in carbon translocation in response to environmental conditions, this study assessed the effect of two different irradiance levels (120 and 250 μmol photons m−2 s−1) and feeding regimes (fed with Artemia salina nauplii and unfed) on the carbon budget of the tropical coral Stylophora pistillata. For this purpose, H13CO3− -enriched seawater was used to trace the conversion of photosynthetic carbon into symbiont and coral biomass and excrete particulate organic carbon. Results showed that carbon translocation (ca. 78 %) and utilization were similar under both irradiance levels for unfed colonies. In contrast, carbon utilization by fed colonies was dependent on the growth irradiance. Under low irradiance, heterotrophy was accompanied by lower carbon translocation (71 %), higher host and symbiont biomass, and higher calcification rates. Under high irradiance, heterotrophy was accompanied by higher rates of photosynthesis, respiration, and carbon translocation (90 %) as well as higher host biomass. Hence, levels of resource sharing within coral–dinoflagellate symbioses depend critically on environmental conditions

A multi-approach survey as the most reliable tool to accurately assess biodiversity: an example of thai murine rodents

Wildlife surveys rely on an accurate taxonomic framework. Identification tools used to reach this goal are not equivalent and may depend on several objectives and constraints, including sampling conservation difficulties, the invasiveness of the sampling techniques, sampling capacity, the relevance of the results, materials needed, the cost and the user time required in the field and laboratory. This article presents and discusses the advantages and limits of each identification tool used in the Ceropath (Community ecology of rodents and their pathogens in South East Asia) program to reach a fast and relevant identification of the rodents sampled. It is concluded that there needs to be a combination of the results from different methods, including the most recent ones, to achieve an improvement in taxonomic identification

Revisiting the taxonomy of the Rattini tribe: a phylogeny-based delimitation of species boundaries

Correspondance: [email protected] are recognized as hosts for at least 60 zoonotic diseases and may represent a serious threat for human health. In the context of global environmental changes and increasing mobility of humans and animals, contacts between pathogens and potential animal hosts and vectors are modified, amplifying the risk of disease emergence. An accurate identification of each rodent at a specific level is needed in order to understand their implications in the transmission of diseases. Among the Muridae, the Rattini tribe encompasses 167 species inhabiting South East Asia, a hotspot of both biodiversity and emerging and re-emerging diseases. The region faces growing economical development that affects habitats, biodiversity and health. Rat species have been demonstrated as significant hosts of pathogens but are still difficult to recognize at a specific level using morphological criteria. DNAbarcoding methods appear as accurate tools for rat species identification but their use is hampered by the need of reliable identification of reference specimens. In this study, we explore and highlight the limits of the current taxonomy of the Rattini tribe. We used the DNA sequence information itself as the primary information source to establish group membership and estimate putative species boundaries. We sequenced two mitochondrial and one nuclear genes from 122 rat samples to perform phylogenetic reconstructions. The method of Pons and colleagues (2006) that determines, with no prior expectations, the locations of ancestral nodes defining putative species was then applied to our dataset. To give an appropriate name to each cluster recognized as a putative species, we reviewed information from the literature and obtained sequences from a museum holotype specimen following the ancient DNA criteria. Using a recently developed methodology, this study succeeds in refining the taxonomy of one of the most difficult groups of mammals. Most of the species expected within the area were retrieved but new putative species limits were also indicated, in particular within Berylmys and Rattus genera, where future taxonomic studies should be directed. Our study lays the foundations to better investigate rodent-born diseases in South East Asia and illustrates the relevance of evolutionary studies for health and medical sciences