Efficient OpenCL-based concurrent tasks offloading on accelerators

Current heterogeneous platforms with CPUs and accelerators have the ability to launch several independent tasks simultaneously, in order to exploit concurrency among them. These tasks typically consist of data transfer commands and kernel computation commands. In this paper we develop a runtime approach to optimize the concurrency between data transfers and kernel computation commands in a multithreaded scenario where each CPU thread offloads tasks to the accelerator. It deploys a heuristic based on a temporal execution model for concurrent tasks. It is able to establish a near-optimal task execution order that significantly reduces the total execution time, including data transfers. Our approach has been evaluated employing five different benchmarks composed of dominant kernel and dominant transfer real tasks. In these experiments our heuristic achieves speedups up to 1.5x in AMD R9 and NVIDIA K20c accelerators and 1.3x in an Intel Xeon Phi (KNC) device.Universidad de Málaga. Campus de Excelencia Internacional Andalucía Tech

Rapidly accelerating subsidence in the Greater Vancouver region from two decades of ERS-ENVISAT-RADARSAT-2 DInSAR measurements

Rapidly accelerating ground subsidence in the south-western part of British Columbia, the third largest metropolitan area in Canada with over 2.3 million of inhabitants, is estimated using the Multidimensional Small Baseline Subset (MSBAS) advanced Differential Interferometric Synthetic Aperture Radar (DInSAR), an effective processing strategy for multi-mission, multi-temporal SAR data. The Synthetic Aperture Radar (SAR) data used in this study consists of seven independent data sets: one ascending and one descending ERS-1/2 and ENVISAT frames, together spanning July 1995–September 2010, and three RADARSAT-2 frames spanning February 2009–October 2012. During the July 1995–October 2012 period we observe fast ground subsidence with a maximum rate of about 2 cm/year in the Greater Vancouver region that includes the Fraser River Delta and the cities of Burnaby, Richmond, Surrey, New Westminster and Vancouver. The rapidly accelerating subsidence is observed beneath the Vancouver International Airport, SkyTrain terminal as well as several agricultural and industrial locales. These time series suggest that the subsidence rate at the studied regions does not decrease with time, as suggested in previous studies, but remains steady or increases. These results also demonstrate the importance of acquiring and appropriately estimating longer time series, as previous studies on the same Greater Vancouver area may have misinterpreted the long term ground deformation rate and direction and underestimated the potential hazard. The long term impact of this subsidence on urban infrastructure can be significant and needs to be investigated further.The work of PG was supported by Banting Postdoctoral Fellowship. The work of KFT was supported by an NSERC Discovery Grant.Peer reviewe

Precipitation Process in Fe-Ni-Al-based Alloys

This chapter covers first the precipitation and coarsening processes in Fe-Ni-Al alloys aged artificially at high temperatures, as well as their effect on the mechanical properties. These results show the precipitation evolution, morphology of precipitates, coarsening kinetics and mechanical properties such as hardness. Additionally, the effect of alloying elements such as copper and chromium is also studied on the precipitation and coarsening processes. The main results of this section are concerning on the coarsening kinetics and its effect on hardness. Besides, the diffusion couple method is employed to study the precipitation and coarsening process in different Fe-Ni-Al alloy compositions, as well as its effect on the hardness. All the above aspects of precipitation and coarsening are also supported with Thermo-Calc calculations

A low-mass planet candidate orbiting Proxima Centauri at a distance of 1.5 AU

Copyright © 2020 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution NonCommercial License 4.0 (CC BY-NC).Our nearest neighbor, Proxima Centauri, hosts a temperate terrestrial planet. We detected in radial velocities evidence of a possible second planet with minimum mass m c sin i c = 5.8 ± 1.9 M ⊕ and orbital period P c = 5.21 - 0.22 + 0.26 years. The analysis of photometric data and spectro-scopic activity diagnostics does not explain the signal in terms of a stellar activity cycle, but follow-up is required in the coming years for confirming its planetary origin. We show that the existence of the planet can be ascertained, and its true mass can be determined with high accuracy, by combining Gaia astrometry and radial velocities. Proxima c could become a prime target for follow-up and characterization with next-generation direct imaging instrumentation due to the large maximum angular separation of ~1 arc second from the parent star. The candidate planet represents a challenge for the models of super-Earth formation and evolution.Peer reviewedFinal Published versio

Molecular Characteristics of Extraintestinal Pathogenic E. coli (ExPEC), Uropathogenic E. coli (UPEC), and Multidrug Resistant E. coli Isolated from Healthy Dogs in Spain. Whole Genome Sequencing of Canine ST372 Isolates and Comparison with Human Isolates Causing Extraintestinal Infections

Under a one health perspective and the worldwide antimicrobial resistance concern, we investigated extraintestinal pathogenic Escherichia coli (ExPEC), uropathogenic E. coli (UPEC), and multidrug resistant (MDR) E. coli from 197 isolates recovered from healthy dogs in Spain between 2013 and 2017. A total of 91 (46.2%) isolates were molecularly classified as ExPEC and/or UPEC, including 50 clones, among which (i) four clones were dominant (B2-CH14-180-ST127, B2-CH52-14-ST141, B2-CH103-9-ST372 and F-CH4-58-ST648) and (ii) 15 had been identified among isolates causing extraintestinal infections in Spanish and French humans in 2015 and 2016. A total of 28 (14.2%) isolates were classified as MDR, associated with B1, D, and E phylogroups, and included 24 clones, of which eight had also been identified among the human clinical isolates. We selected 23 ST372 strains, 21 from healthy dogs, and two from human clinical isolates for whole genome sequencing and built an SNP-tree with these 23 genomes and 174 genomes (128 from canine strains and 46 from human strains) obtained from public databases. These 197 genomes were segregated into six clusters. Cluster 1 comprised 74.6% of the strain genomes, mostly composed of canine strain genomes (p < 0.00001). Clusters 4 and 6 also included canine strain genomes, while clusters 2, 3, and 5 were significantly associated with human strain genomes. Finding several common clones and clone-related serotypes in dogs and humans suggests a potentially bidirectional clone transfer that argues for the one health perspective

The Peroxisomal 3-keto-acyl-CoA thiolase B Gene Expression Is under the Dual Control of PPARα and HNF4α in the Liver

PPARα and HNF4α are nuclear receptors that control gene transcription by direct binding to specific nucleotide sequences. Using transgenic mice deficient for either PPARα or HNF4α, we show that the expression of the peroxisomal 3-keto-acyl-CoA thiolase B (Thb) is under the dependence of these two transcription factors. Transactivation and gel shift experiments identified a novel PPAR response element within intron 3 of the Thb gene, by which PPARα but not HNF4α transactivates. Intriguingly, we found that HNF4α enhanced PPARα/RXRα transactivation from TB PPRE3 in a DNA-binding independent manner. Coimmunoprecipitation assays supported the hypothesis that HNF4α was physically interacting with RXRα. RT-PCR performed with RNA from liver-specific HNF4α-null mice confirmed the involvement of HNF4α in the PPARα-regulated induction of Thb by Wy14,643. Overall, we conclude that HNF4α enhances the PPARα-mediated activation of Thb gene expression in part through interaction with the obligate PPARα partner, RXRα

Correlating activity and defects in (photo)electrocatalysts using in-situ transient optical microscopy

(Photo)electrocatalysts capture sunlight and use it to drive chemical reactions such as water splitting to produce H2. A major factor limiting photocatalyst development is their large heterogeneity which spatially modulates reactivity and precludes establishing robust structure-function relationships. To make such links requires simultaneously probing of the electrochemical environment at microscopic length scales (nm to um) and broad timescales (ns to s). Here, we address this challenge by developing and applying in-situ steady-state and transient optical microscopies to directly map and correlate local electrochemical activity with hole lifetimes, oxygen vacancy concentration and the photoelectrodes crystal structure. Using this combined approach alongside spatially resolved X-Ray absorption measurements, we study microstructural and point defects in prototypical hematite (Fe2O3) photoanodes. We demonstrate that regions of Fe2O3, adjacent to microstructural cracks have a better photoelectrochemical response and reduced back electron recombination due to an optimal oxide vacancy concentration, with the film thickness and carbon impurities also dramatically influencing activity in a complex manner. Our work highlights the importance of microscopic mapping to understand activity and the impact of defects in even, seemingly, homogeneous solid-state metal oxide photoelectrodes

Mapping rootable depth and root zone plant-available water holding capacity of the soil of sub-Saharan Africa

In rainfed crop production, root zone plant-available water holding capacity (RZ-PAWHC) of the soil has a large influence on crop growth and the yield response to management inputs such as improved seeds and fertilisers. However, data are lacking for this parameter in sub-Saharan Africa (SSA). This study produced the first spatially explicit, coherent and complete maps of the rootable depth and RZ-PAWHC of soil in SSA. We compiled georeferenced data from 28,000 soil profiles from SSA, which were used as input for digital soil mapping (DSM) techniques to produce soil property maps of SSA. Based on these soil properties, we developed and parameterised (pedotransfer) functions, rules and criteria to evaluate soil water retention at field capacity and wilting point, the soil fine earth fraction from coarse fragments content and, for maize, the soil rootability (relative to threshold values) and rootable depth. Maps of these secondary soil properties were derived using the primary soil property maps as input for the evaluation rules and the results were aggregated over the rootable depth to obtain a map of RZ-PAWHC, with a spatial resolution of 1 km2. The mean RZ-PAWHC for SSA is 74mm and the associated average root zone depth is 96 cm. Pearson correlation between the two is 0.95. RZ-PAWHC proves most limited by the rootable depth but is also highly sensitive to the definition of field capacity. The total soil volume of SSA potentially rootable by maize is reduced by one third (over 10,500 km3) due to soil conditions restricting root zone depth. Of these, 4800 km3 are due to limited depth of aeration, which is the factor most severely limiting in terms of extent (km2), and 2500 km3 due to sodicity which is most severely limiting in terms of degree (depth in cm). Depth of soil to bedrock reduces the rootable soil volume by 2500 km3, aluminium toxicity by 600 km3, porosity by 120 km3 and alkalinity by 20 km3. The accuracy of the map of rootable depth and thus of RZ-PAWHC could not be validated quantitatively due to absent data on rootability and rootable depth but is limited by the accuracy of the primary soil property maps. The methodological framework is robust and has been operationalised such that the maps can easily be updated as additional data become available

Conductance statistics from a large array of sub-10 nm molecular junctions

Devices made of few molecules constitute the miniaturization limit that both inorganic and organic-based electronics aspire to reach. However, integration of millions of molecular junctions with less than 100 molecules each has been a long technological challenge requiring well controlled nanometric electrodes. Here we report molecular junctions fabricated on a large array of sub-10 nm single crystal Au nanodots electrodes, a new approach that allows us to measure the conductance of up to a million of junctions in a single conducting Atomic Force Microscope (C-AFM) image. We observe two peaks of conductance for alkylthiol molecules. Tunneling decay constant (beta) for alkanethiols, is in the same range as previous studies. Energy position of molecular orbitals, obtained by transient voltage spectroscopy, varies from peak to peak, in correlation with conductance values.Comment: ACS Nano (in press

An assessment of the Atlantic and Arctic sea–air CO2 fluxes, 1990–2009

© The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 10 (2013): 607-627, doi:10.5194/bg-10-607-2013.The Atlantic and Arctic Oceans are critical components of the global carbon cycle. Here we quantify the net sea–air CO2 flux, for the first time, across different methodologies for consistent time and space scales for the Atlantic and Arctic basins. We present the long-term mean, seasonal cycle, interannual variability and trends in sea–air CO2 flux for the period 1990 to 2009, and assign an uncertainty to each. We use regional cuts from global observations and modeling products, specifically a pCO2-based CO2 flux climatology, flux estimates from the inversion of oceanic and atmospheric data, and results from six ocean biogeochemical models. Additionally, we use basin-wide flux estimates from surface ocean pCO2 observations based on two distinct methodologies. Our estimate of the contemporary sea–air flux of CO2 (sum of anthropogenic and natural components) by the Atlantic between 40° S and 79° N is −0.49 ± 0.05 Pg C yr−1, and by the Arctic it is −0.12 ± 0.06 Pg C yr−1, leading to a combined sea–air flux of −0.61 ± 0.06 Pg C yr−1 for the two decades (negative reflects ocean uptake). We do find broad agreement amongst methodologies with respect to the seasonal cycle in the subtropics of both hemispheres, but not elsewhere. Agreement with respect to detailed signals of interannual variability is poor, and correlations to the North Atlantic Oscillation are weaker in the North Atlantic and Arctic than in the equatorial region and southern subtropics. Linear trends for 1995 to 2009 indicate increased uptake and generally correspond between methodologies in the North Atlantic, but there is disagreement amongst methodologies in the equatorial region and southern subtropics.U. Schuster has been supported by EU grants IP 511176-2 (CARBOOCEAN), 212196 (COCOS), and 264879 (CARBOCHANGE), and UK NERC grant NE/H017046/1 (UKOARP). G. A. McKinley and A. Fay thank NASA for support (NNX08AR68G, NNX11AF53G). P. Landsch¨utzer has been supported by EU grant 238366 (GREENCYCLESII). N. Metzl acknowledges the French national funding program LEFE/INSU. Support for N. Gruber has been provided by EU grants 264879 (CARBOCHANGE) and 283080 (GEO-CARBON) S. Doney acknowledges support from NOAA (NOAA-NA07OAR4310098). T. Takahashi is supported by NOAA (NAO80AR4320754)