Effects of kelp canopy removal on young-of-the-year rockfish abundance, using two census methods

In 1976 an experimental research project was initiated to examine the possible effects of the removal of a giant kelp, Macrocystis pyrifera, canopy in a central California kelp bed on Young-of-the-Year (YOY) fish populations. A total of 7823 fishes was captured and marked using freeze branding. Pre-canopy removal population estimates were made using the Schnabel method and post-canopy removal population estimates were made using the Petersen method (Lincoln Index). A significant (p < .0004) reduction of fish occurred immediately after the canopy was removed and the population remained at a reduced level for at least 60 days. This information warranted the creation of a second expanded project. In 1977 we established three study areas consisting of a kelp bed to be harvested (C), a kelp bed not to be harvested (NC) and a control kelp bed. We captured and marked over 82,000 YOY fish in Areas C and NC. Using the same statistical methods from the 1976 study, a significant reduction was found to occur in fish populations within harvested Area C and unharvested area NC: however, the reductions were not significantly different between the two areas. The large reduction in the fish population in the harvested area occurred when fish moved into the unharvested area. The large, unexpected reduction in fish numbers in the unharvested area (NC) occurred when larger predatory YOY bocaccio moved into the control area (X) as the experimental area (C) was being harvested. The bocaccio removed in excess of 20% of the biomass of YOY blue rockfish, which was composed of resident fish and recently migrated fish from the harvested kelp bed. Predation on YOY blue rockfish was also evident in the harvested area. Population estimates using visible fish transects by divers correlated well with population estimates from the capture/recapture studies in 1976, but correlation was poorer the following year when many more fish were present. (32pp.

Early life-history studies of nearshore rockfishes and lingcod off Central California, 1987-92

This study focused on the physical and biological processes that influence the distribution, abundance, growth, and survival of young-of-the-year (YOY) rockfishes and lingcod along the central California coast. The annual somatic and reproductive condition of adult female blue rockfish corresponded to annual upwelling. Resulting larval production may correspond to the reproductive potential of adults; however, ultimate recruitment success of YOY is also effected by oceanographic conditions during their planktonic stage. Within a year, each species of settled YOY was observed concurrently and in relatively similar abundances at all study dive sites along the central coast. Most species of YOY exhibited similar growth patterns among stations and years. We found a high degree of interannual variability in the condition of adults and relative abundances of YOY. We believe a large part of this variability is due to annual oceanographic conditions, specifically upwelling. Marine reserves, which would protect populations of reproductively mature rockfishes and lingcod and insure 1arval production, have been suggested as an alternative to present management strategies for these species. However, a crucial question is whether or not larvae from adult fish in reserves would significantly contribute to replenishing stocks in other areas. This study was undertaken to assist in determining the feasibility of reserves to enhance nearshore rockfish and lingcod populations. (78pp.

The use of the anesthetic metomidate hydrochloride as an aid in open water capture of young-of-the-year rockfish

Many species of young-of-the-year (YOY) rockfish, Sebastes sp. move inshore into shallow reef areas in central California each year. We monitored the dates of arrival, relative abundance, species composition, lengths, and growth rates of these arrivals to help assess recruitment variability and stock success. We tested the usefulness of the anesthetic metomidate hydrochloride as a non-lethal method to collect YOY rockfish to assess growth, abundance, and species composition. Earlier experiments by other researchers illustrated the usefulness of metomidate to collect benthic-oriented adult rockfish. Our research tested the possibility of using metomidate hydrochloride to collect open-water and benthic-oriented YOY rockfish. The anesthetic was applied and the fish captured by divers. Several concentrations of metomidate were tested, premixed both in fresh and salt water. The anesthetic was not very useful in collecting open water YOY rockfish as the fish rapidly left the area of application and avoided being anesthetized. Increasing the concentration of metomidate did not increase success of capture of open-water YOY rockfish. However, the anesthetic metomidate worked very well in capturing benthic-oriented YOY rockfishes. (22pp.

The Mind Agents in Netlogo 3.1

In [Houk, 2005], the “Agents of the mind” idea is proposed as a suitable framework for studying the dynamics and complexities of mind. “Agents of the mind” is inspired by the society of mind idea of Marvin Minsky [Minsky, 1988]. According to the society of mind, the mind is a complex system. The mind agents are elusive to identify. The mind is proposed as a hierarchy of agents. The higher hierarchy agents compose of lower hierarchy agents. Higher level agents do not command lower level agents but they basically trigger or invoke lower level agents. Agents are functional entities and they interact with each other. One important part of the society of mind idea is that agents at the lowest level are the real workers. Higher level functionalities emerge as a result of the functioning of the lower level agents and the interactions between them. In agents of the mind project, computational distributed processing modules (DPM) are posited for corresponding anatomically defined assemblies and they are referred to as the agents of the mind. M1 is an anatomical area in the cerebral cortex which produces voluntary commands via its loops through basal ganglia and cerebellum. M1-DPM is a computational distributed processing module which simulates M1 area and its loops for voluntary commands production. We use Netlogo 3.1 agent-based programming environment to illuminate the properties of mind. In this work, the attractor network in cerebellar loop and the effects of Purkinje cell on production of motor commands have been studied. The results are reported in this paper

Discovery and analysis of p-mode and g-mode oscillations in the A-type primary of the eccentric binary HD 209295

We have discovered both intermediate-order gravity mode and low-order pressure mode pulsation in the same star, HD 209295. It is therefore both a Gamma Doradus and a Delta Scuti star, which makes it the first pulsating star to be a member of two classes. The star is a single-lined spectroscopic binary with an orbital period of 3.10575 d and an eccentricity of 0.352. Weak pulsational signals are found in both the radial velocity and line-profile variations, allowing us to show that the two highest-amplitude Gamma Doradus pulsation modes are consistent with l=1 and |m|=1. In our 280 h of BVI multi-site photometry we detected ten frequencies in the light variations, one in the Delta Scuti regime and nine in the Gamma Doradus domain. Five of the Gamma Doradus frequencies are exact integer multiples of the orbital frequency. This observation leads us to suspect they are tidally excited. Results of theoretical modeling (stability analysis, tidal excitation) were consistent with the observations. We could not detect the secondary component of the system in infrared photometry, suggesting that it may not be a main-sequence star. Archival data of HD 209295 show a strong ultraviolet excess, the origin of which is not known. The orbit of the primary is consistent with a secondary mass of M > 1.04 Msun indicative of a neutron star or a white dwarf companion.Comment: 18 pages, 18 figures, accepted for publication in MNRAS, shortened abstrac

The State of Coral Reef Ecosystems of the United States and Pacific Freely Associated States: 2002

Called for by the U.S. Coral Reef Task Force’s (USCRTF) National Action Plan to Conserve Coral Reefs, this is the first biennial report on the condition of coral reefs. It is the scientific baseline for subsequent reports on the health of U.S. coral reef ecosystems that are to be used by NOAA and others to evaluate the efficacy of coral reef conservation and management practices. The National Oceanic and Atmospheric Administration’s National Ocean Service led the development of this report. It was authored by 38 experts and supported by 79 contributors from government agencies and non-governmental organizations across the nation and internationally. Over 100 Task Force members and other notable scientists have reviewed this document

Modeling the Afferent Dynamics of the Baroreflex Control System

In this study we develop a modeling framework for predicting baroreceptor firing rate as a function of blood pressure. We test models within this framework both quantitatively and qualitatively using data from rats. The models describe three components: arterial wall deformation, stimulation of mechanoreceptors located in the BR nerve-endings, and modulation of the action potential frequency. The three sub-systems are modeled individually following well-established biological principles. The first submodel, predicting arterial wall deformation, uses blood pressure as an input and outputs circumferential strain. The mechanoreceptor stimulation model, uses circumferential strain as an input, predicting receptor deformation as an output. Finally, the neural model takes receptor deformation as an input predicting the BR firing rate as an output. Our results show that nonlinear dependence of firing rate on pressure can be accounted for by taking into account the nonlinear elastic properties of the artery wall. This was observed when testing the models using multiple experiments with a single set of parameters. We find that to model the response to a square pressure stimulus, giving rise to post-excitatory depression, it is necessary to include an integrate-and-fire model, which allows the firing rate to cease when the stimulus falls below a given threshold. We show that our modeling framework in combination with sensitivity analysis and parameter estimation can be used to test and compare models. Finally, we demonstrate that our preferred model can exhibit all known dynamics and that it is advantageous to combine qualitative and quantitative analysis methods

Enabling microbial syringol conversion through structure-guided protein engineering

Microbial conversion of aromatic compounds is an emerging and promising strategy for valorization of the plant biopolymer lignin. A critical and often rate-limiting reaction in aromatic catabolism is O-aryl-demethylation of the abundant aromatic methoxy groups in lignin to form diols, which enables subsequent oxidative aromatic ring-opening. Recently, a cytochrome P450 system, GcoAB, was discovered to demethylate guaiacol (2-methoxyphenol), which can be produced from coniferyl alcohol-derived lignin, to form catechol. However, native GcoAB has minimal ability to demethylate syringol (2,6-dimethoxyphenol), the analogous compound that can be produced from sinapyl alcohol-derived lignin. Despite the abundance of sinapyl alcohol-based lignin in plants, no pathway for syringol catabolism has been reported to date. Here we used structure-guided protein engineering to enable microbial syringol utilization with GcoAB. Specifically, a phenylalanine residue (GcoA-F169) interferes with the binding of syringol in the active site, and on mutation to smaller amino acids, efficient syringol O-demethylation is achieved. Crystallography indicates that syringol adopts a productive binding pose in the variant, which molecular dynamics simulations trace to the elimination of steric clash between the highly flexible side chain of GcoA-F169 and the additional methoxy group of syringol. Finally, we demonstrate in vivo syringol turnover in Pseudomonas putida KT2440 with the GcoA-F169A variant. Taken together, our findings highlight the significant potential and plasticity of cytochrome P450 aromatic O-demethylases in the biological conversion of lignin-derived aromatic compounds

MagAO Imaging of Long-period Objects (MILO). II. A Puzzling White Dwarf around the Sun-like Star HD 11112

The version of record, Rodigas, T. J. et al, 'MagAO Imaging of long-period objects (MILO). II. A puzzling white dwarf around the sun-like star HD 11112', The Astrophysical Journal, 831:177, November 2016, is available online via doi: 10.3847/0004-637X/831/2/177 © 2016. The American Astronomical Society. All rights reserved.HD 11112 is an old, Sun-like star that has a long-term radial velocity (RV) trend indicative of a massive companion on a wide orbit. Here we present direct images of the source responsible for the trend using the Magellan Adaptive Optics system. We detect the object (HD 11112B) at a separation of 2\fasec 2 (100 AU) at multiple wavelengths spanning 0.6-4 \microns ~and show that it is most likely a gravitationally-bound cool white dwarf. Modeling its spectral energy distribution (SED) suggests that its mass is 0.9-1.1 \msun, which corresponds to very high-eccentricity, near edge-on orbits from Markov chain Monte Carlo analysis of the RV and imaging data together. The total age of the white dwarf is $>2\sigma$ discrepant with that of the primary star under most assumptions. The problem can be resolved if the white dwarf progenitor was initially a double white dwarf binary that then merged into the observed high-mass white dwarf. HD 11112B is a unique and intriguing benchmark object that can be used to calibrate atmospheric and evolutionary models of cool white dwarfs and should thus continue to be monitored by RV and direct imaging over the coming years.Peer reviewedFinal Published versio