Railroads and the Making of Modern America -- Tools for Spatio-Temporal Correlation, Analysis, and Visualization

This project aims to integrate large-scale data sources from the Digging into Data repositories with other types of relevant data on the railroad system, already assembled by the project directors. Our project seeks to develop useful tools for spatio-temporal visualization of these data and the relationships among them. Our interdisciplinary team includes computer science, history, and geography researchers. Because the railroad "system" and its spatio-temporal configuration appeared differently from locality-to-locality and region-to-region, we need to adjust how we "locate" and "see" the system. By applying data mining and pattern recognition techniques, software systems can be created that dynamically redefine the way spatial data are represented. Utilizing processes common to analysis in Computer Science, we propose to develop a software framework that allows these embedded concepts to be visualized and further studied

Desert locust populations, rainfall and climate change: insights from phenomenological models using gridded monthly data

Using autocorrelation analysis and autoregressive integrated moving average (ARIMA)modelling, we analysed a time series of the monthly number of 1° grid squares infested with desert locust Schistocerca gregaria swarms throughout the geographical range of the species from 1930–1987. Statistically significant first- and higher-order autocorrelations were found in the series. Although endogenous components captured much of the variance, adding rainfall data improved endogenous ARIMA models and resulted in more realistic forecasts. Using a square-root transformation for the locust data improved the fit. The models were only partially successful when accounting for the dramatic changes in abundance which may occur during locust upsurges and declines, in some cases successfully predicting these phenomena but underestimating their severity. Better fitting models were also produced when rainfall data were added to models of an equivalent series for desert locust hoppers (nymphs) that incorporated lagged data for locust swarms as independent variables, representing parent generations. The results are discussed in relation to predicting likely changes in desert locust dynamics with reference to potential effects of climate change

Highly Variable Objects in the Palomar-QUEST Survey: A Blazar Search using Optical Variability

We identify 3,113 highly variable objects in 7,200 square degrees of the Palomar-QUEST Survey, which each varied by more than 0.4 magnitudes simultaneously in two broadband optical filters on timescales from hours to roughly 3.5 years. The primary goal of the selection is to find blazars by their well-known violent optical variability. Because most known blazars have been found in radio and/or X-ray wavelengths, a sample discovered through optical variability may have very different selection effects, elucidating the range of behavior possible in these systems. A set of blazars selected in this unusual manner will improve our understanding of the physics behind this extremely variable and diverse class of AGN. The object positions, variability statistics, and color information are available using the Palomar-QUEST CasJobs server. The time domain is just beginning to be explored over large sky areas; we do not know exactly what a violently variable sample will hold. About 20% of the sample has been classified in the literature; over 70% of those objects are known or likely AGN. The remainder largely consists of a variety of variable stars, including a number of RR Lyrae and cataclysmic variables.Comment: 22 pages (preprint format), 2 figures. Accepted for publication in ApJ. References update

A non-synonymous coding change in the CYP19A1 gene Arg264Cys (rs700519) does not affect circulating estradiol, bone structure or fracture

Background The biosynthesis of estrogens from androgens is catalyzed by aromatase P450 enzyme, coded by the CYP19A1 gene on chromosome 15q21.2. Genetic variation within the CYP19A1 gene sequence has been shown to alter the function of the enzyme. The aim of this study is to investigate whether a non-synonymous Arg264Cys (rs700519) single nucleotide polymorphism (SNP) is associated with altered levels of circulating estradiol, areal bone mineral density or fracture. Methods This population- based study of 1,022 elderly Caucasian women (mean age 74.95 ± 2.60 years) was genotyped for the rs700519 SNP were analyzed to detect any association with endocrine and bone phenotypes. Results The genotype frequencies were 997 wildtype (97.6%), 24 heterozygous (2.3%) and 1 homozygous (0.1%). When individuals were grouped by genotype, there was no association between the polymorphism and serum estradiol (wildtype 27.5 ± 16.0; variants 31.2 ± 18.4, P = 0.27). There was also no association seen on hip bone mineral density (wildtype 0.81 ± 0.12; 0.84 ± 0.14 for variants, P = 0.48) or femoral neck bone mineral density (0.69 ± 0.10 for wildtype; 0.70 ± 0.12 for variants, P = 0.54) before or after correction of the data with age, height, weight and calcium therapy. There were also no associations with quantitative ultrasound measures of bone structure (broadband ultrasound attenuation, speed of sound and average stiffness). Conclusions In a cohort of 1,022 elderly Western Australian women, the presence of Arg264Cys (rs700519) polymorphism was not found to be associated with serum estradiol, bone structure or phenotypes

The Baryon Oscillation Spectroscopic Survey of SDSS-III

The Baryon Oscillation Spectroscopic Survey (BOSS) is designed to measure the scale of baryon acoustic oscillations (BAO) in the clustering of matter over a larger volume than the combined efforts of all previous spectroscopic surveys of large scale structure. BOSS uses 1.5 million luminous galaxies as faint as i=19.9 over 10,000 square degrees to measure BAO to redshifts z<0.7. Observations of neutral hydrogen in the Lyman alpha forest in more than 150,000 quasar spectra (g<22) will constrain BAO over the redshift range 2.15<z<3.5. Early results from BOSS include the first detection of the large-scale three-dimensional clustering of the Lyman alpha forest and a strong detection from the Data Release 9 data set of the BAO in the clustering of massive galaxies at an effective redshift z = 0.57. We project that BOSS will yield measurements of the angular diameter distance D_A to an accuracy of 1.0% at redshifts z=0.3 and z=0.57 and measurements of H(z) to 1.8% and 1.7% at the same redshifts. Forecasts for Lyman alpha forest constraints predict a measurement of an overall dilation factor that scales the highly degenerate D_A(z) and H^{-1}(z) parameters to an accuracy of 1.9% at z~2.5 when the survey is complete. Here, we provide an overview of the selection of spectroscopic targets, planning of observations, and analysis of data and data quality of BOSS.Comment: 49 pages, 16 figures, accepted by A

Evaluation of Protocol Uniformity Concerning Laparoscopic Cholecystectomy in The Netherlands

Background: Iatrogenic bile duct injury remains a current complication of laparoscopic cholecystectomy. One uniform and standardized protocol, based on the "critical view of safety" concept of Strasberg, should red

Histopathological grading of pediatric ependymoma: reproducibility and clinical relevance in European trial cohorts

<p>Abstract</p> <p>Background</p> <p>Histopathological grading of ependymoma has been controversial with respect to its reproducibility and clinical significance. In a 3-phase study, we reviewed the pathology of 229 intracranial ependymomas from European trial cohorts of infants (2 trials - SFOP/CNS9204) and older children (2 trials - AIEOP/CNS9904) to assess both diagnostic concordance among five neuropathologists and the prognostic utility of histopathological variables, particularly tumor grading.</p> <p>Results</p> <p>In phase 1, using WHO criteria and without first discussing any issue related to grading ependymomas, pathologists assessed and independently graded ependymomas from 3 of 4 trial cohorts. Diagnosis of grade II ependymoma was less frequent than grade III, a difference that increased when one cohort (CNS9204) was reassessed in phase 2, during which the pathologists discussed ependymoma grading, jointly reviewed all CNS9204 tumors, and defined a novel grading system based on the WHO classification. In phase 3, repeat independent review of two cohorts (SFOP/CNS9904) using the novel system was associated with a substantial increase in concordance on grading. Extent of tumor resection was significantly associated with progression-free survival (PFS) in SFOP and AIEOP, but not in CNS9204 and CNS9904. Strength of consensus on grade was significantly associated with PFS in only one trial cohort (AIEOP). Consensus on the scoring of individual histopathological features (necrosis, angiogenesis, cell density, and mitotic activity) correlated with PFS in AIEOP, but in no other trial.</p> <p>Conclusions</p> <p>We conclude that concordance on grading ependymomas can be improved by using a more prescribed scheme based on the WHO classification. Unfortunately, this appears to have utility in limited clinical settings.</p

Peaceful Coexistence: Examining Kent’s Relativistic Solution to the Quantum Measurement Problem

Can there be ‘peaceful coexistence’ between quantum theory and special relativity? Thirty years ago, Shimony hoped that isolating the culprit (i.e. the false assumption) in proofs of Bell inequalities as Outcome Independence would secure such peaceful coexistence: or, if not secure it, at least show a way—maybe the best or only way—to secure it. In this paper, I begin by being sceptical of Shimony’s approach, urging that we need a relativistic solution to the quantum measurement problem (Sect. 2). Then I analyse Outcome Independence in Kent’s realist one-world Lorentz-invariant interpretation of quantum theory (Sects. 3 and 4). Then I consider Shimony’s other condition, Parameter Independence, both in Kent’s proposal and more generally, in the light of recent remarkable theorems by Colbeck, Renner and Leegwater (Sect. 5). For both Outcome Independence and Parameter Independence, there is a striking analogy with the situation in pilot-wave theory. Finally, I will suggest that these recent theorems make some kind of peaceful coexistence mandatory for someone who, like Shimony, endorses Parameter Independence.Nagoya University, Graduate School of Information Science. Supported in part by the JSPS KAKENHI No. 26247016 and the John Templeton Foundation ID 35771