Monte Carlo Simulations with Indefinite and Complex-Valued Measures

A method is presented to tackle the sign problem in the simulations of systems having indefinite or complex-valued measures. In general, this new approach is shown to yield statistical errors smaller than the crude Monte Carlo using absolute values of the original measures. Exactly solvable, one-dimensional Ising models with complex temperature and complex activity illustrate the considerable improvements and the workability of the new method even when the crude one fails.Comment: 10 A4 pages, postscript (140K), UM-P-93-7

Observation of a decoupled band in 123 Cs

The methods of in-beam γ -ray spectroscopy have been used to study 123 Cs produced by the 115 In( 12 C, 4 n ) reaction. Five coincident stretched E 2 transitions, previously assigned in the literature to 123 Ba, have been identified as members of a decoupled band in 123 Cs.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/45822/1/10050_2005_Article_BF01422105.pd

Parental origin of sequence variants associated with complex diseases

To access publisher full text version of this article. Please click on the hyperlink in Additional Links fieldEffects of susceptibility variants may depend on from which parent they are inherited. Although many associations between sequence variants and human traits have been discovered through genome-wide associations, the impact of parental origin has largely been ignored. Here we show that for 38,167 Icelanders genotyped using single nucleotide polymorphism (SNP) chips, the parental origin of most alleles can be determined. For this we used a combination of genealogy and long-range phasing. We then focused on SNPs that associate with diseases and are within 500 kilobases of known imprinted genes. Seven independent SNP associations were examined. Five-one with breast cancer, one with basal-cell carcinoma and three with type 2 diabetes-have parental-origin-specific associations. These variants are located in two genomic regions, 11p15 and 7q32, each harbouring a cluster of imprinted genes. Furthermore, we observed a novel association between the SNP rs2334499 at 11p15 and type 2 diabetes. Here the allele that confers risk when paternally inherited is protective when maternally transmitted. We identified a differentially methylated CTCF-binding site at 11p15 and demonstrated correlation of rs2334499 with decreased methylation of that site.info:eu-repo/grantAgreement/EC/FP7/21807

School-based prevention for adolescent Internet addiction: prevention is the key. A systematic literature review

Adolescents’ media use represents a normative need for information, communication, recreation and functionality, yet problematic Internet use has increased. Given the arguably alarming prevalence rates worldwide and the increasingly problematic use of gaming and social media, the need for an integration of prevention efforts appears to be timely. The aim of this systematic literature review is (i) to identify school-based prevention programmes or protocols for Internet Addiction targeting adolescents within the school context and to examine the programmes’ effectiveness, and (ii) to highlight strengths, limitations, and best practices to inform the design of new initiatives, by capitalizing on these studies’ recommendations. The findings of the reviewed studies to date presented mixed outcomes and are in need of further empirical evidence. The current review identified the following needs to be addressed in future designs to: (i) define the clinical status of Internet Addiction more precisely, (ii) use more current psychometrically robust assessment tools for the measurement of effectiveness (based on the most recent empirical developments), (iii) reconsider the main outcome of Internet time reduction as it appears to be problematic, (iv) build methodologically sound evidence-based prevention programmes, (v) focus on skill enhancement and the use of protective and harm-reducing factors, and (vi) include IA as one of the risk behaviours in multi-risk behaviour interventions. These appear to be crucial factors in addressing future research designs and the formulation of new prevention initiatives. Validated findings could then inform promising strategies for IA and gaming prevention in public policy and education

Meta-analysis of type 2 Diabetes in African Americans Consortium

Type 2 diabetes (T2D) is more prevalent in African Americans than in Europeans. However, little is known about the genetic risk in African Americans despite the recent identification of more than 70 T2D loci primarily by genome-wide association studies (GWAS) in individuals of European ancestry. In order to investigate the genetic architecture of T2D in African Americans, the MEta-analysis of type 2 DIabetes in African Americans (MEDIA) Consortium examined 17 GWAS on T2D comprising 8,284 cases and 15,543 controls in African Americans in stage 1 analysis. Single nucleotide polymorphisms (SNPs) association analysis was conducted in each study under the additive model after adjustment for age, sex, study site, and principal components. Meta-analysis of approximately 2.6 million genotyped and imputed SNPs in all studies was conducted using an inverse variance-weighted fixed effect model. Replications were performed to follow up 21 loci in up to 6,061 cases and 5,483 controls in African Americans, and 8,130 cases and 38,987 controls of European ancestry. We identified three known loci (TCF7L2, HMGA2 and KCNQ1) and two novel loci (HLA-B and INS-IGF2) at genome-wide significance (4.15 × 10(-94)<P<5 × 10(-8), odds ratio (OR)  = 1.09 to 1.36). Fine-mapping revealed that 88 of 158 previously identified T2D or glucose homeostasis loci demonstrated nominal to highly significant association (2.2 × 10(-23) < locus-wide P<0.05). These novel and previously identified loci yielded a sibling relative risk of 1.19, explaining 17.5% of the phenotypic variance of T2D on the liability scale in African Americans. Overall, this study identified two novel susceptibility loci for T2D in African Americans. A substantial number of previously reported loci are transferable to African Americans after accounting for linkage disequilibrium, enabling fine mapping of causal variants in trans-ethnic meta-analysis studies.Peer reviewe

Novel Loci for Adiponectin Levels and Their Influence on Type 2 Diabetes and Metabolic Traits : A Multi-Ethnic Meta-Analysis of 45,891 Individuals

J. Kaprio, S. Ripatti ja M.-L. Lokki työryhmien jäseniä.Peer reviewe

Whole-genome sequencing reveals host factors underlying critical COVID-19

Critical COVID-19 is caused by immune-mediated inflammatory lung injury. Host genetic variation influences the development of illness requiring critical care1 or hospitalization2,3,4 after infection with SARS-CoV-2. The GenOMICC (Genetics of Mortality in Critical Care) study enables the comparison of genomes from individuals who are critically ill with those of population controls to find underlying disease mechanisms. Here we use whole-genome sequencing in 7,491 critically ill individuals compared with 48,400 controls to discover and replicate 23 independent variants that significantly predispose to critical COVID-19. We identify 16 new independent associations, including variants within genes that are involved in interferon signalling (IL10RB and PLSCR1), leucocyte differentiation (BCL11A) and blood-type antigen secretor status (FUT2). Using transcriptome-wide association and colocalization to infer the effect of gene expression on disease severity, we find evidence that implicates multiple genes—including reduced expression of a membrane flippase (ATP11A), and increased expression of a mucin (MUC1)—in critical disease. Mendelian randomization provides evidence in support of causal roles for myeloid cell adhesion molecules (SELE, ICAM5 and CD209) and the coagulation factor F8, all of which are potentially druggable targets. Our results are broadly consistent with a multi-component model of COVID-19 pathophysiology, in which at least two distinct mechanisms can predispose to life-threatening disease: failure to control viral replication; or an enhanced tendency towards pulmonary inflammation and intravascular coagulation. We show that comparison between cases of critical illness and population controls is highly efficient for the detection of therapeutically relevant mechanisms of disease

Using social network theory to explore a participatory action research collaboration through social media

Collaborative learning communities (CLCs) are recognised for their potential to support Physical Education (PE) teachers’ professional development. Recent writings suggest that the integration of on-and-off line learning opportunities within CLCs can further promote teachers’ networking. The aim of the present study was to use a social network framework for tracking changes that technology use brought in already existing paths of bonds and ties within a CLC. There were five participants (two teacher educators; three PE teachers) in study, using participatory action research (PAR) to implement a games-centred approach in primary PE. Data collection included the game framework, instructional templates and lesson plans, face-to-face and virtual meetings (ZOOM and WhatsApp), message texts, semi-structured interviews and notes on each participant’s PAR cycle (planning, acting and reflecting). Data from the meetings were gathered in two ways: (a) for face-to-face meetings, research memos were compiled at the end of each meeting, (b) for ZOOM, meetings were recorded and transcribed, and (c) WhatsApp conversations were gathered and exported verbatim to a Word document. Data analysis followed an inductive approach of open and axial coding. Overall results indicated three themes: (1) digital media as contexts of a common identity negotiation; (2) digital media as spaces for virtual connectivity and praxis; and (3) digital media as support systems for content-based learning. The use of digital tools can help sustain PE teacher pedagogical growth when e-networking bonds, ties, boundaries and path lengths serve to facilitate the breaking down of authority and the establishment of shared power and inclusion. © 2020 Informa UK Limited, trading as Taylor &amp; Francis Group

Icosahedral symmetry super-carborane and beyond

© 2014 Elsevier B.V. All rights reserved. Nano-structures are often sought to be constructed from some especially stable multifunctional unit which can be manipulated into different desired forms. To this end an icosahedral borane or carborane unit is considered as a basic icosahedral building block, to build further larger nano-structures. A potential is noted for the formation of a sort of super-carborane unit, comprised of 12 carboranes at the nodes of a large icosahedron. A further possibility involves taking 12 of these icosahedrons at the corners of an even larger icosahedron, to yield a super-super-carborane structure - perhaps with acetyleneic linkages between the super-carborane units.Peer Reviewe