Functional Analysis of the SPA Gene Family in Arabidopsis thaliana

Ambient light conditions affect development throughout the plant life cycle, including seed germination, seedling development and the induction of flowering. In the model plant Arabidopsis, the COP1-SPA ubiquitin ligase complex plays a central role in suppressing light signaling in darkness. The COP1-SPA complex targets positively acting factors like HY5, a protein necessary for normal seedling development in the light, several photoreceptors and the flowering time regulator CONSTANS for degradation via the 26S proteasome. Therefore, one of the major functions of the light signal transduction pathways is the inactivation of the COP1-SPA complex. While COP1 is a single copy gene, the SPA proteins are encoded by four different loci (SPA1-SPA4). All SPA proteins have redundant, but also distinct functions in regulating plant development. SPA1 and SPA2 are the key regulators that suppress photomorphogenesis in dark-grown seedlings. Over-stimulation in light-grown seedlings is primarily prevented by SPA1, and to a minor extent, also by SPA3 and SPA4. SPA2, in contrast has only negligible function in the light. SPA1 is sufficient for repressing flowering under non-inductive short-day conditions. Here, I show that distinct functions of the SPA genes partially correlate with their distinct gene expression patterns. RNA gel blot-analysis revealed that the expression of SPA1, SPA3 and SPA4, but not that of SPA2, is positively influenced by light of different wavelengths. All main photoreceptors contribute to the up-regulation of these SPA transcripts, implying that photoreceptors initiate a negative feedback regulation, which might protect plants from over-stimulation by light. GUS reporter gene experiments show that SPA genes exhibit somewhat distinct tissue-specific expression patterns, which might be important for tissue specific regulation of COP1-SPA targets. However, differences in SPA gene expression cannot account for all distinct SPA gene functions. Promoter-swap experiments with SPA1, SPA2 and SPA4 show that all SPA proteins are potent repressors in dark-grown seedlings. SPA1 and SPA4 also act as repressor in the light. SPA2, however, can never act as a repressor in the light, not even when it is expressed from the strong light-induced SPA1 promoter. These results show that SPA proteins themselves feature properties that determine characteristic SPA protein functions. All SPA proteins feature a characteristic domain structure with a C-terminal WD-repeat, a central coiled-coil domain and a less well-conserved N-terminus that includes a kinase-like motif. The WD-repeat domain and the coiled-coil domain are essential for formation of the COP1-SPA complex as well as interactions with various ubiquitination targets. In contrast, the function of the N-terminal domain is unknown. Aiming to determine the importance of the N-terminal domain of SPA1, I conducted a structure-function analysis. While the N-terminal domain of SPA1 is dispensable for SPA1 function in the seedling stage, this domain is required for SPA1-mediated repression of flowering in non-inductive short-day conditions. These results indicate, that the SPA1 N-terminal domain can full-fill an essential function

A Light-Independent Magnetic Compass in the Leatherback Sea Turtle

Diverse animals can orient to the earth's magnetic field (1-6), but the mechanism or mechanisms undrlying magnetic field detection have not been determined. Behavioral (7-9) amd neurophysiological (10-12) results suggest that the transduction process underlying magnetic compass orientation in vertebrates is light-dependent, a finding consistent with theoretical models proposing that magnetoreception involves a modulation of the response of retinal photoreceptors to light (13, 14). We report, however, that leatherback sea turtle (Dermochelys coriacea) hatchlings orient to the geomagnetic field in complete darkness. Thus, light-dependence is not a universal feature of vertebrate magnetic compasses

Orientation to oceanic waves by green turtle hatchlings

Minutes after emerging from underground nests, hatchling green turtles (Chelonia my das L.) enter the sea and begin a migration towards the open ocean. To test the hypothesis that migrating hatchlings use wave cues to maintain their seaward headings, we released turtles offshore during unusual weather conditions when waves moved in atypical directions. Hatchlings swam into approaching waves in all experiments, even when doing so resulted in orientation back towards land. These data suggest that green turtle hatchlings normally maintain seaward headings early in the offshore migration by using wave propagation direction as an orientation cue. Because waves and swells reliably move towards shore in shallow coastal areas, swimming into waves usually results in movement towards the open sea. The physiological mechanisms that underlie wave detection by sea turtle hatchlings are not known. Calculations indicate that, at the depth at which hatchlings swim, accelerations produced beneath typical waves and swells along the Florida coast are sufficient to be detected by the vertebrate inner ear. We therefore hypothesize that hatchlings determine wave direction while under water by monitoring the sequence of horizontal and vertical accelerations that occur as waves pass above

Correlated electron emission in laser-induced nonsequence double ionization of Helium

In this paper, we have investigated the correlated electron emission of the nonsequence double ionization (NSDI) in an intense linearly polarized field. The theoretical model we employed is the semiclassical rescattering model, the model atom we used is the helium. We find a significant correlation between magnitude and direction of the momentum of two emission electrons, and give a good explanation for this striking phenomenon by observing the classical collisional trajectories. We argue that this correlation phenomenon is universal in NSDI process, as revealed by the recent experiment on the argon.Comment: 4 pages, 3 figures, accepted for publication in Phys. Rev.

Multimodal wide-field two-photon excitation imaging: characterization of the technique for in vivo applications

We report fast, non-scanning, wide-field two-photon fluorescence excitation with spectral and lifetime detection for in vivo biomedical applications. We determined the optical characteristics of the technique, developed a Gaussian flat-field correction method to reduce artifacts resulting from non-uniform excitation such that contrast is enhanced, and showed that it can be used for ex vivo and in vivo cellular-level imaging. Two applications were demonstrated: (i) ex vivo measurements of beta-amyloid plaques in retinas of transgenic mice, and (ii) in vivo imaging of sulfonated gallium(III) corroles injected into tumors. We demonstrate that wide-field two photon fluorescence excitation with flat-field correction provides more penetration depth as well as better contrast and axial resolution than the corresponding one-photon wide field excitation for the same dye. Importantly, when this technique is used together with spectral and fluorescence lifetime detection modules, it offers improved discrimination between fluorescence from molecules of interest and autofluorescence, with higher sensitivity and specificity for in vivo applications

Shot noise limited characterization of femtosecond light pulses

Probing the evolution of physical systems at the femto- or attosecond timescale with light requires accurate characterization of ultrashort optical pulses. The time profiles of such pulses are usually retrieved by methods utilizing optical nonlinearities, which require significant signal powers and operate in a limited spectral range\cite{Trebino_Review_of_Scientific_Instruments97,Walmsley_Review_09}. We present a linear self-referencing characterization technique based on time domain localization of the pulse spectral components, operated in the single-photon regime. Accurate timing of the spectral slices is achieved with standard single photon detectors, rendering the technique applicable in any spectral range from near infrared to deep UV. Using detection electronics with about $70$ ps response, we retrieve the temporal profile of a picowatt pulse train with $\sim10$ fs resolution, setting a new scale of sensitivity in ultrashort pulse characterization.Comment: Supplementary information contained in raw dat

Strong field double ionization of H2 : Insights from nonlinear dynamics

The uncorrelated (``sequential'') and correlated (``nonsequential'') double ionization of the H2 molecule in strong laser pulses is investigated using the tools of nonlinear dynamics. We focus on the phase-space dynamics of this system, specifically by finding the dynamical structures that regulate these ionization processes. The emerging picture complements the recollision scenario by clarifying the distinct roles played by the recolliding and core electrons. Our analysis leads to verifiable predictions of the intensities where qualitative changes in ionization occur. We also show how these findings depend on the internuclear distance

Correlation dynamics between electrons and ions in the fragmentation of D2_2 molecules by short laser pulses

We studied the recollision dynamics between the electrons and D$_2^+$ ions following the tunneling ionization of D$_2$ molecules in an intense short pulse laser field. The returning electron collisionally excites the D$_2^+$ ion to excited electronic states from there D$_2^+$ can dissociate or be further ionized by the laser field, resulting in D$^+$ + D or D$^+$ + D$^+$, respectively. We modeled the fragmentation dynamics and calculated the resulting kinetic energy spectrum of D$^+$ to compare with recent experiments. Since the recollision time is locked to the tunneling ionization time which occurs only within fraction of an optical cycle, the peaks in the D$^+$ kinetic energy spectra provides a measure of the time when the recollision occurs. This collision dynamics forms the basis of the molecular clock where the clock can be read with attosecond precision, as first proposed by Corkum and coworkers. By analyzing each of the elementary processes leading to the fragmentation quantitatively, we identified how the molecular clock is to be read from the measured kinetic energy spectra of D$^+$ and what laser parameters be used in order to measure the clock more accurately.Comment: 13 pages with 14 figure

Coherent control using adaptive learning algorithms

We have constructed an automated learning apparatus to control quantum systems. By directing intense shaped ultrafast laser pulses into a variety of samples and using a measurement of the system as a feedback signal, we are able to reshape the laser pulses to direct the system into a desired state. The feedback signal is the input to an adaptive learning algorithm. This algorithm programs a computer-controlled, acousto-optic modulator pulse shaper. The learning algorithm generates new shaped laser pulses based on the success of previous pulses in achieving a predetermined goal.Comment: 19 pages (including 14 figures), REVTeX 3.1, updated conten

A two-dimensional, two-electron model atom in a laser pulse: exact treatment, single active electron-analysis, time-dependent density functional theory, classical calculations, and non-sequential ionization

Owing to its numerical simplicity, a two-dimensional two-electron model atom, with each electron moving in one direction, is an ideal system to study non-perturbatively a fully correlated atom exposed to a laser field. Frequently made assumptions, such as the ``single active electron''- approach and calculational approximations, e.g. time dependent density functional theory or (semi-) classical techniques, can be tested. In this paper we examine the multiphoton short pulse-regime. We observe ``non-sequential'' ionization, i.e.\ double ionization at lower field strengths as expected from a sequential, single active electron-point of view. Since we find non-sequential ionization also in purely classical simulations, we are able to clarify the mechanism behind this effect in terms of single particle trajectories. PACS Number(s): 32.80.RmComment: 10 pages, 16 figures (gzipped postscript), see also http://www.physik.tu-darmstadt.de/tqe