Flipping for Food: The Use of a Methane Seep by Tanner Crabs (Chionoecetes tanneri)

Methane seep habitats are widespread chemosynthesis-based ecosystems that span continental margins and interact with surrounding marine systems. With many of these habitats occurring below 200 m, seeps can serve as an important source of nutrients in otherwise food limited deep-sea environments. However, the potential for marauding megafauna to assimilate seep derived nutrition has been difficult to quantify. Here, we provide the first evidence of a commercially harvested species, Chionoecetes tanneri (tanner crab), assimilating chemosynthetic production. Although bulk isotope analysis of C. tanneri tissue indicated no quantifiable incorporation of seep-derived carbon or sulfur (mean δ13C, −18.5‰; mean δ34S, 19.5‰), depletions in 13C (δ13C as light as −38.8‰) were noted in fatty acid (FA) compounds. In addition, diagnostic biomarkers for seep bacteria, including 16:1ω6 and 18:1ω8c FA's, were found to have been assimilated by C. tanneri. Futher supporting a trophic link between the seep and the C. tanneri, seep associated bacteria and archaea were, in certain cases, the dominant taxa in the gut contents of the crabs. This work provides the first insights into a link between seep production and deep-sea ecosystem services, specifically fisheries production. In addition, it reveals a methodological bias that could exist in some trophic studies where bulk isotopes under-represent the role of seep nutrition in the diet of marauding animals

Towards an optimal design for ecosystem-level ocean observatories

Four operational factors, together with high development cost, currently limit the use of ocean observatories in ecological and fisheries applications: 1) limited spatial coverage; 2) limited integration of multiple types of technologies; 3) limitations in the experimental design for in situ studies; and 4) potential unpredicted bias in monitoring outcomes due to the infrastructure’s presence and functioning footprint. To address these limitations, we propose a novel concept of a standardized “ecosystem observatory module” structure composed of a central node and three tethered satellite pods together with permanent mobile platforms. The module would be designed with a rigid spatial configuration to optimize overlap among multiple observation technologies each providing 360° coverage around the module, including permanent stereo-video cameras, acoustic imaging sonar cameras, horizontal multi-beam echosounders and a passive acoustic array. The incorporation of multiple integrated observation technologies would enable unprecedented quantification of macrofaunal composition, abundance and density surrounding the module, as well as the ability to track the movements of individual fishes and macroinvertebrates. Such a standardized modular design would allow for the hierarchical spatial connection of observatory modules into local module clusters and larger geographic module networks, providing synoptic data within and across linked ecosystems suitable for fisheries and ecosystem level monitoring on multiple scales.Peer ReviewedPostprint (author's final draft

Chapter 2 Towards an Optimal Design for Ecosystem-Level Ocean Observatories

Four operational factors, together with high development cost, currently limit the use of ocean observatories in ecological and fisheries applications: 1) limited spatial coverage; 2) limited integration of multiple types of technologies; 3) limitations in the experimental design for in situ studies; and 4) potential unpredicted bias in monitoring outcomes due to the infrastructure’s presence and functioning footprint. To address these limitations, we propose a novel concept of a standardized “ecosystem observatory module” structure composed of a central node and three tethered satellite pods together with permanent mobile platforms. The module would be designed with a rigid spatial configuration to optimize overlap among multiple observation technologies each providing 360° coverage of a cylindrical or hemi-spherical volume around the module, including permanent stereo-video cameras, acoustic imaging sonar cameras, horizontal multi-beam echosounders and a passive acoustic array. The incorporation of multiple integrated observation technologies would enable unprecedented quantification of macrofaunal composition, abundance and density surrounding the module, as well as the ability to track the movements of individual fishes and macroinvertebrates. Such a standardized modular design would allow for the hierarchical spatial connection of observatory modules into local module clusters and larger geographic module networks, providing synoptic data within and across linked ecosystems suitable for fisheries and ecosystem level monitoring on multiple scales

High levels of gut-homing immunoglobulin A+ B lymphocytes support the pathogenic role of intestinal mucosal hyperresponsiveness in immunoglobulin A nephropathy patients

No abstract availabl

The potential of video imagery from worldwide cabled observatory networks to provide information supporting fish-stock and biodiversity assessment

Seafloor multiparametric fibre-optic-cabled video observatories are emerging tools for standardized monitoring programmes, dedicated to the production of real-time fishery-independent stock assessment data. Here, we propose that a network of cabled cameras can be set up and optimized to ensure representative long-term monitoring of target commercial species and their surrounding habitats. We highlight the importance of adding the spatial dimension to fixed-point-cabled monitoring networks, and the need for close integration with Artificial Intelligence pipelines, that are necessary for fast and reliable biological data processing. We then describe two pilot studies, exemplary of using video imagery and environmental monitoring to derive robust data as a foundation for future ecosystem-based fish-stock and biodiversity management. The first example is from the NE Pacific Ocean where the deep-water sablefish (Anoplopoma fimbria) has been monitored since 2010 by the NEPTUNE cabled observatory operated by Ocean Networks Canada. The second example is from the NE Atlantic Ocean where the Norway lobster (Nephrops norvegicus) is being monitored using the SmartBay observatory developed for the European Multidisciplinary Seafloor and water column Observatories. Drawing from these two examples, we provide insights into the technological challenges and future steps required to develop full-scale fishery-independent stock assessments.This work was funded by the following project activities: ARIM (Autonomous Robotic sea-floor Infrastructure for benthopelagic Monitoring; MartTERA ERA-Net Cofound), ARCHES (Autonomous Robotic Networks to Help Modern Societies; German Helmholtz Association), RESBIO (TEC2017-87861-R; Ministerio de Ciencia, Innovación y Universidades, Spanish Government), RESNEP (CTM2017-82991-C2-1-R; Ministerio de Ciencia, Innovación y Universidades, Spanish Government), and SmartLobster (EMSO-LINK Trans National Access-TNA). The EMSO_SmartBay cabled observatory was funded by Science Foundation Ireland (SFI) as part of a SFI Research Infrastructure Award Grant No. 12/RI/2331.Peer ReviewedPostprint (author's final draft

Framing Cutting-Edge Integrative Deep-Sea Biodiversity Monitoring via Environmental DNA and Optoacoustic Augmented Infrastructures

Deep-sea ecosystems are reservoirs of biodiversity that are largely unexplored, but their exploration and biodiscovery are becoming a reality thanks to biotechnological advances (e.g., omics technologies) and their integration in an expanding network of marine infrastructures for the exploration of the seas, such as cabled observatories. While still in its infancy, the application of environmental DNA (eDNA) metabarcoding approaches is revolutionizing marine biodiversity monitoring capability. Indeed, the analysis of eDNA in conjunction with the collection of multidisciplinary optoacoustic and environmental data, can provide a more comprehensive monitoring of deep-sea biodiversity. Here, we describe the potential for acquiring eDNA as a core component for the expanding ecological monitoring capabilities through cabled observatories and their docked Internet Operated Vehicles (IOVs), such as crawlers. Furthermore, we provide a critical overview of four areas of development: (i) Integrating eDNA with optoacoustic imaging ; (ii) Development of eDNA repositories and cross-linking with other biodiversity databases ; (iii) Artificial Intelligence for eDNA analyses and integration with imaging data ; and (iv) Benefits of eDNA augmented observatories for the conservation and sustainable management of deep-sea biodiversity. Finally, we discuss the technical limitations and recommendations for future eDNA monitoring of the deep-sea. It is hoped that this review will frame the future direction of an exciting journey of biodiscovery in remote and yet vulnerable areas of our planet, with the overall aim to understand deep-sea biodiversity and hence manage and protect vital marine resources

Affective recognition from EEG signals: an integrated data-mining approach

Emotions play an important role in human communication, interaction, and decision making processes. Therefore, considerable efforts have been made towards the automatic identification of human emotions, in particular electroencephalogram (EEG) signals and Data Mining (DM) techniques have been then used to create models recognizing the affective states of users. However, most previous works have used clinical grade EEG systems with at least 32 electrodes. These systems are expensive and cumbersome, and therefore unsuitable for usage during normal daily activities. Smaller EEG headsets such as the Emotiv are now available and can be used during daily activities. This paper investigates the accuracy and applicability of previous affective recognition methods on data collected with an Emotiv headset while participants used a personal computer to fulfill several tasks. Several features were extracted from four channels only (AF3, AF4, F3 and F4 in accordance with the 10–20 system). Both Support Vector Machine and Naïve Bayes were used for emotion classification. Results demonstrate that such methods can be used to accurately detect emotions using a small EEG headset during a normal daily activity

Photography-based taxonomy is inadequate, unnecessary, and potentially harmful for biological sciences

The question whether taxonomic descriptions naming new animal species without type specimen(s) deposited in collections should be accepted for publication by scientific journals and allowed by the Code has already been discussed in Zootaxa (Dubois & Nemésio 2007; Donegan 2008, 2009; Nemésio 2009a–b; Dubois 2009; Gentile & Snell 2009; Minelli 2009; Cianferoni & Bartolozzi 2016; Amorim et al. 2016). This question was again raised in a letter supported by 35 signatories published in the journal Nature (Pape et al. 2016) on 15 September 2016. On 25 September 2016, the following rebuttal (strictly limited to 300 words as per the editorial rules of Nature) was submitted to Nature, which on 18 October 2016 refused to publish it. As we think this problem is a very important one for zoological taxonomy, this text is published here exactly as submitted to Nature, followed by the list of the 493 taxonomists and collection-based researchers who signed it in the short time span from 20 September to 6 October 2016