Improving the conservation of Mediterranean Chondrichthyans : the ELASMOMED DNA barcode reference library

Cartilaginous fish are particularly vulnerable to anthropogenic stressors and environmental change because of their K-selected reproductive strategy. Accurate data from scientific surveys and landings are essential to assess conservation status and to develop robust protection and management plans. Currently available data are often incomplete or incorrect as a result of inaccurate species identifications, due to a high level of morphological stasis, especially among closely related taxa. Moreover, several diagnostic characters clearly visible in adult specimens are less evident in juveniles. Here we present results generated by the ELASMOMED Consortium, a regional network aiming to sample and DNA-barcode the Mediterranean Chondrichthyans with the ultimate goal to provide a comprehensive DNA barcode reference library. This library will support and improve the molecular taxonomy of this group and the effectiveness of management and conservation measures. We successfully barcoded 882 individuals belonging to 42 species (17 sharks, 24 batoids and one chimaera), including four endemic and several threatened ones. Morphological misidentifications were found across most orders, further confirming the need for a comprehensive DNA barcoding library as a valuable tool for the reliable identification of specimens in support of taxonomist who are reviewing current identification keys. Despite low intraspecific variation among their barcode sequences and reduced samples size, five species showed preliminary evidence of phylogeographic structure. Overall, the ELASMOMED initiative further emphasizes the key role accurate DNA barcoding libraries play in establishing reliable diagnostic species specific features in otherwise taxonomically problematic groups for biodiversity management and conservation actions.peer-reviewe

Unpublished Mediterranean records of marine alien and cryptogenic species

Good datasets of geo-referenced records of alien species are a prerequisite for assessing the spatio-temporal dynamics of biological invasions, their invasive potential, and the magnitude of their impacts. However, with the exception of first records on a country level or wider regions, observations of species presence tend to remain unpublished, buried in scattered repositories or in the personal databases of experts. Through an initiative to collect, harmonize and make such unpublished data for marine alien and cryptogenic species in the Mediterranean Sea available, a large dataset comprising 5376 records was created. It includes records of 239 alien or cryptogenic taxa (192 Animalia, 24 Plantae, 23 Chromista) from 19 countries surrounding the Mediterranean Sea. In terms of records, the most reported Phyla in descending order were Chordata, Mollusca, Chlorophyta, Arthropoda, and Rhodophyta. The most recorded species was Caulerpa cylindracea, followed by Siganus luridus, Magallana sp. (cf. gigas or angulata) and Pterois miles. The dataset includes records from 1972 to 2020, with the highest number of records observed in 2018. Among the records of the dataset, Dictyota acutiloba is a first record for the Mediterranean Sea. Nine first country records are also included: the alga Caulerpa taxifolia var. distichophylla, the cube boxfish Ostracion cubicus, and the cleaner shrimp Urocaridella pulchella from Israel; the sponge Paraleucilla magna from Libya and Slovenia; the lumpfish Cyclopterus lumpus from Cyprus; the bryozoan Celleporaria vermiformis and the polychaetes Prionospio depauperata and Notomastus aberans from Malta

Unpublished Mediterranean and Black Sea records of marine alien, cryptogenic, and neonative species

To enrich spatio-temporal information on the distribution of alien, cryptogenic, and neonative species in the Mediterranean and the Black Sea, a collective effort by 173 marine scientists was made to provide unpublished records and make them open access to the scientific community. Through this effort, we collected and harmonized a dataset of 12,649 records. It includes 247 taxa, of which 217 are Animalia, 25 Plantae and 5 Chromista, from 23 countries surrounding the Mediterranean and the Black Sea. Chordata was the most abundant taxonomic group, followed by Arthropoda, Mollusca, and Annelida. In terms of species records, Siganus luridus, Siganus rivulatus, Saurida lessepsianus, Pterois miles, Upeneus moluccensis, Charybdis (Archias) longicollis, and Caulerpa cylindracea were the most numerous. The temporal distribution of the records ranges from 1973 to 2022, with 44% of the records in 2020–2021. Lethrinus borbonicus is reported for the first time in the Mediterranean Sea, while Pomatoschistus quagga, Caulerpa cylindracea, Grateloupia turuturu, and Misophria pallida are first records for the Black Sea; Kapraunia schneideri is recorded for the second time in the Mediterranean and for the first time in Israel; Prionospio depauperata and Pseudonereis anomala are reported for the first time from the Sea of Marmara. Many first country records are also included, namely: Amathia verticillata (Montenegro), Ampithoe valida (Italy), Antithamnion amphigeneum (Greece), Clavelina oblonga (Tunisia and Slovenia), Dendostrea cf. folium (Syria), Epinephelus fasciatus (Tunisia), Ganonema farinosum (Montenegro), Macrorhynchia philippina (Tunisia), Marenzelleria neglecta (Romania), Paratapes textilis (Tunisia), and Botrylloides diegensis (Tunisia).peer-reviewe

Trophic Interactions of European Hake Merluccius merluccius (Linnaeus, 1758) in Benthic Communities off the Moroccan Mediterranean Coastline: Seasonal and Ontogenetic Shifts

The European hake, Merluccius merluccius (Linnaeus, 1758), is one of the most important resources for Mediterranean fisheries. Due to its pivotal role in energy transfer from lower to higher trophic levels, this species is a crucial component of the ecosystem’s functioning. The ecological role of Merluccius merluccius, off the Moroccan Mediterranean Sea (southern Alboran Sea), was investigated, exploring seasonal and ontogenetic shifts, geographical variations in prey composition, and feeding strategy. Between November 2020 and July 2022, a total of 402 hake specimens were collected by oceanographic bottom trawl surveys (MEDITS) that were carried out during warm and cold seasons to assess their diet and feeding habits. The sample was analyzed according to fish sizes and seasons, and qualitative/quantitative feeding indices were calculated. The trophic spectrum of Merluccius merluccius included 24 prey items in total, mainly belonging to Osteichthyes (12), Crustacea (10), Cephalopoda (1), and Polychaeta (1), suggesting a generalist behavior of this predator as in numerous regions of the Mediterranean Sea, with several species that occasionally occurs in its diet. In the Moroccan Mediterranean Sea, Osteichthyes proved to be the most important prey item (%IRI = 78.56) among the different zoological groups, followed by Crustacea (%IRI = 16.22). The other food items were occasionally and randomly consumed, and cannibalism was low (0.8%). Hierarchical cluster analysis and nonmetric multidimensional scaling (nMDS) showed different feeding habits of two main groups separated at 60% similarity: small specimens 0.05). A trophic level (TROPH) of 4.1 was calculated, indicating that the species is a top predator (quaternary consumers). The TROPH values ranged between 2.58 and 4.38 from juveniles to adults, increasing asymptotically with the size of specimens. In contrast to what has previously been found in other Mediterranean regions, where ichthyophagous hake feed mostly on pelagic Osteichthyes, such as Engraulis encrasicolus, Sardina pilchardus, and Micromesistius poutassou, the study points up the vital role played by Atlantic horse mackerel Trachurus trachurus for hake diet in the Moroccan Mediterranean Sea. Information on the feeding ecology of fish species as provided in this study is essential to improve ecosystem conservation in accordance with multispecies approach to fishery management, leading to a better understanding of the role of hake in the Moroccan Mediterranean Sea demersal communities

Seasonal and Spatial Patterns of Ecotoxicological Indices of Trace Elements in Superficial Sediments of the Marchica Lagoon Following Restoration Actions during the Last Decade

International audienceMarchica Lagoon, a Ramsar site on the Mediterranean coast of Morocco, is experiencing the impacts of watershed pollution, which includes pollutants from the domestic, agricultural, industrial, and mining sectors. Restoration actions were undertaken around this lagoon during the last decade in order to protect its ecological value and to develop tourist activity. To conserve the biodiversity in the lagoon, it is important to assess the environmental state of this ecosystem. This study aims to evaluate the ecotoxicological state of sediments through the post restoration characterization of the trace elements Pb, Cu, Zn, Cr, Co, and Ba, as well as their correlation to the major elements, grain size, and total organic carbon, sampled during two campaigns (the wet and dry seasons of 2018) across a sampling network of thirteen stations. Multivariate analysis and ecotoxicological risk assessment of the trace elements using the sediment quality guidelines and five pollution indices (geoaccumulation index (Igeo), enrichment factor (EF), contamination factor (CF), pollution-load index (PLI), and mean effect range median quotient (m-ERM-Q)) revealed contamination of the lagoon by Pb, Zn, and Cu, and minimal pollution by Cr, Co, and Ba. The distribution of the biological-risk index reveals that four zones of the lagoon may present a high probability of toxicity, thus constituting potential risk areas for aquatic organisms: during the wet season, the area in the northwestern sandbar border, the southwest eutrophication zone, and the mouth of the stream valley conveying industrial discharges; and during dry season, the northwestern eutrophication zone. Despite the restoration actions achieved around the lagoon, the lead, zinc, and copper concentrations increased, and their variation was significant between group stations. The biodiversity conservation of Marchica Lagoon requires continuous monitoring and assessment, as well as the implementation of an integrated management plan with restoration actions, not only around the lagoon, but also at its watershed level

Neighbour-Joining tree based on genetic p-distances of COI barcode sequences of 17 shark species.

<p>Numbers near nodes indicate bootstrap values (>50%). The distance scale bar is given. Each species' sample size and geographic origin are detailed in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0170244#pone.0170244.s002" target="_blank">S2 Table</a>.</p

Cases of specimens’ misidentification by FAO fishing division.

<p>The number of misidentified individuals over the total number of barcoded individuals is given in parenthesis.</p

Neighbour-Joining tree based on genetic p-distances of COI barcode sequences of 23 skate species.

<p>Numbers near nodes indicate bootstrap values (>50%). The distance scale bar is given. Each species' sample size and geographic origin are detailed in <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0170244#pone.0170244.s002" target="_blank">S2 Table</a>.</p

Species with discordant BINs found by the ‘BIN Discordance Report’ sequence analysis tool on BOLD.

<p>Taxonomic ranks of conflict are reported including species of the same genus up to taxa belonging to different orders. The column BIN Taxon Variation shows the number of records for each taxon in parenthesis.</p