Definite Streptococcus bovis endocarditis: characteristics in 20 patients

ObjectiveTo determine the specific characteristics of Streptococcus bovis infective endocarditis (IE) by reviewing our own experience of S. bovis IE.MethodsTwenty episodes of definite S. bovis IE were reviewed in 20 patients hospitalized from 1980 to 1996.ResultsThe mean age was 62 ± 14 years, and 14 (70%) patients had no known predisposing cardiac condition. The principal antimicrobials used were penicillin G (N = 10) and amoxycillin (N = 8). Surgery was required in four (20%) patients. Neurologic complications occurred in eight (40%) patients, after initiation of therapy in six (75%) (mean time: 14 days). An unfavorable outcome was observed in four of 20 patients and tended to be more frequent in patients who had had neurologic complications (P – 0.10). Colonic tumors were present in 11 of 16 (69%) patients.ConclusionsAdvanced age, occurrence of IE on presumably normal valves, high rate of neurologic complications, associated gastrointestinal diseases and low mortality rate during initial follow-up are characteristic features of S. bovis IE observed in this study

NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference.

MOTIVATION: Reconstruction of gene regulatory networks (GRNs) is of utmost interest to biologists and is vital for understanding the complex regulatory mechanisms within the cell. Despite various methods developed for reconstruction of GRNs from gene expression profiles, they are notorious for high false positive rate owing to the noise inherited in the data, especially for the dataset with a large number of genes but a small number of samples. RESULTS: In this work, we present a novel method, namely NARROMI, to improve the accuracy of GRN inference by combining ordinary differential equation-based recursive optimization (RO) and information theory-based mutual information (MI). In the proposed algorithm, the noisy regulations with low pairwise correlations are first removed by using MI, and the redundant regulations from indirect regulators are further excluded by RO to improve the accuracy of inferred GRNs. In particular, the RO step can help to determine regulatory directions without prior knowledge of regulators. The results on benchmark datasets from Dialogue for Reverse Engineering Assessments and Methods challenge and experimentally determined GRN of Escherichia coli show that NARROMI significantly outperforms other popular methods in terms of false positive rates and accuracy. AVAILABILITY: All the source data and code are available at: http://csb.shu.edu.cn/narromi.htm

Classification of non-Riemannian doubled-yet-gauged spacetime

Assuming $\mathbf{O}(D,D)$ covariant fields as the `fundamental' variables, Double Field Theory can accommodate novel geometries where a Riemannian metric cannot be defined, even locally. Here we present a complete classification of such non-Riemannian spacetimes in terms of two non-negative integers, $(n,\bar{n})$, $0\leq n+\bar{n}\leq D$. Upon these backgrounds, strings become chiral and anti-chiral over $n$ and $\bar{n}$ directions respectively, while particles and strings are frozen over the $n+\bar{n}$ directions. In particular, we identify $(0,0)$ as Riemannian manifolds, $(1,0)$ as non-relativistic spacetime, $(1,1)$ as Gomis-Ooguri non-relativistic string, $(D{-1},0)$ as ultra-relativistic Carroll geometry, and $(D,0)$ as Siegel's chiral string. Combined with a covariant Kaluza-Klein ansatz which we further spell, $(0,1)$ leads to Newton-Cartan gravity. Alternative to the conventional string compactifications on small manifolds, non-Riemannian spacetime such as $D=10$, $(3,3)$ may open a new scheme of the dimensional reduction from ten to four.Comment: 1+41 pages; v2) Refs added; v3) Published version; v4) Sign error in (2.51) correcte

Detours and Paths: BRST Complexes and Worldline Formalism

We construct detour complexes from the BRST quantization of worldline diffeomorphism invariant systems. This yields a method to efficiently extract physical quantum field theories from particle models with first class constraint algebras. As an example, we show how to obtain the Maxwell detour complex by gauging N=2 supersymmetric quantum mechanics in curved space. Then we concentrate on first class algebras belonging to a class of recently introduced orthosymplectic quantum mechanical models and give generating functions for detour complexes describing higher spins of arbitrary symmetry types. The first quantized approach facilitates quantum calculations and we employ it to compute the number of physical degrees of freedom associated to the second quantized, field theoretical actions.Comment: 1+35 pages, 1 figure; typos corrected and references added, published versio

Aharonov-Casher effect for spin one particles in a noncommutative space

In this work the Aharonov-Casher (AC) phase is calculated for spin one particles in a noncommutative space. The AC phase has previously been calculated from the Dirac equation in a noncommutative space using a gauge-like technique [17]. In the spin-one, we use kemmer equation to calculate the phase in a similar manner. It is shown that the holonomy receives non-trivial kinematical corrections. By comparing the new result with the already known spin 1/2 case, one may conjecture a generalized formula for the corrections to holonomy for higher spins.Comment: 9 page

Schr\"odinger Manifolds

This article propounds, in the wake of influential work of Fefferman and Graham about Poincar\'e extensions of conformal structures, a definition of a (Poincar\'e-)Schr\"odinger manifold whose boundary is endowed with a conformal Bargmann structure above a non-relativistic Newton-Cartan spacetime. Examples of such manifolds are worked out in terms of homogeneous spaces of the Schr\"odinger group in any spatial dimension, and their global topology is carefully analyzed. These archetypes of Schr\"odinger manifolds carry a Lorentz structure together with a preferred null Killing vector field; they are shown to admit the Schr\"odinger group as their maximal group of isometries. The relationship to similar objects arising in the non-relativisitc AdS/CFT correspondence is discussed and clarified.Comment: 42 pages, 1 figure, published version: J. Phys. A: Math. Theor. 45 (2012) 395203 (24pp

Paul trapping of radioactive 6He+ions and direct observation of their beta-decay

We demonstrate that abundant quantities of short-lived beta unstable ions can be trapped in a novel transparent Paul trap and that their decay products can directly be detected in coincidence. Low energy 6He+ (807 ms half-life) ions were extracted from the SPIRAL source at GANIL, then decelerated, cooled and bunched by means of the buffer gas cooling technique. More than 10^8 ions have been stored over a measuring period of six days and about 10^5 decay coincidences between the beta particles and the 6Li^{++} recoiling ions have been recorded. The technique can be extended to other short-lived species, opening new possibilities for trap assisted decay experiments.Comment: 4 pages, 4 figures, submitted to Phys.Rev.Let

Landau Analog Levels for Dipoles in the Noncommutative Space and Phase Space

In the present contribution we investigate the Landau analog energy quantization for neutral particles, that possesses a nonzero permanent magnetic and electric dipole moments, in the presence of an homogeneous electric and magnetic external fields in the context of the noncommutative quantum mechanics. Also, we analyze the Landau--Aharonov--Casher and Landau--He--McKellar--Wilkens quantization due to noncommutative quantum dynamics of magnetic and electric dipoles in the presence of an external electric and magnetic fields and the energy spectrum and the eigenfunctions are obtained. Furthermore, we have analyzed Landau quantization analogs in the noncommutative phase space, and we obtain also the energy spectrum and the eigenfunctions in this context.Comment: 20 pages, references adde

Symmetries and currents of the ideal and unitary Fermi gases

The maximal algebra of symmetries of the free single-particle Schroedinger equation is determined and its relevance for the holographic duality in non-relativistic Fermi systems is investigated. This algebra of symmetries is an infinite dimensional extension of the Schroedinger algebra, it is isomorphic to the Weyl algebra of quantum observables, and it may be interpreted as a non-relativistic higher-spin algebra. The associated infinite collection of Noether currents bilinear in the fermions are derived from their relativistic counterparts via a light-like dimensional reduction. The minimal coupling of these currents to background sources is rewritten in a compact way by making use of Weyl quantisation. Pushing forward the similarities with the holographic correspondence between the minimal higher-spin gravity and the critical O(N) model, a putative bulk dual of the unitary and the ideal Fermi gases is discussed.Comment: 67 pages, 2 figures; references added, minor improvements in the presentation, version accepted for publication in JHE