Biomimetic Space-Variant Sampling in a Vision Prosthesis Improves the User's Skill in a Localization Task

In this experiment, we test the hypothesis of whether a 'retina-like' space variant sampling pattern can improve the efficiency of a visual prosthesis. Subjects wearing a visuo-auditory substitution system were tested for their ability to point at visual targets. The test group (space-variant sampling), performed significantly better than the control group (uniform sampling). The pointing accuracy was enhanced, as was the speed to find the target. Surprisingly, the time spanned to complete the training was also reduced, suggesting that this space-variant sampling scheme facilitates the mastering of sensorimotor contingencies

Seeing with sound? Exploring different characteristics of a visual-to-auditory sensory substitution device

Sensory substitution devices convert live visual images into auditory signals, for example with a web camera (to record the images), a computer (to perform the conversion) and headphones (to listen to the sounds). In a series of three experiments, the performance of one such device (‘The vOICe’) was assessed under various conditions on blindfolded sighted participants. The main task that we used involved identifying and locating objects placed on a table by holding a webcam (like a flashlight) or wearing it on the head (like a miner’s light). Identifying objects on a table was easier with a hand-held device, but locating the objects was easier with a head-mounted device. Brightness converted into loudness was less effective than the reverse contrast (dark being loud), suggesting that performance under these conditions (natural indoor lighting, novice users) is related more to the properties of the auditory signal (ie the amount of noise in it) than the cross-modal association between loudness and brightness. Individual differences in musical memory (detecting pitch changes in two sequences of notes) was related to the time taken to identify or recognise objects, but individual differences in self-reported vividness of visual imagery did not reliably predict performance across the experiments. In general, the results suggest that the auditory characteristics of the device may be more important for initial learning than visual associations

An integrated pipeline for next-generation sequencing and annotation of mitochondrial genomes

Mitochondrial (mt) genomics represents an understudied but important field of molecular biology. Increasingly, mt dysfunction is being linked to a range of human diseases, including neurodegenerative disorders, diabetes and impairment of childhood development. In addition, mt genomes provide important markers for systematic, evolutionary and population genetic studies. Some technological limitations have prevented the expanded generation and utilization of mt genomic data for some groups of organisms. These obstacles most acutely impede, but are not limited to, studies requiring the determination of complete mt genomic data from minute amounts of material (e.g. biopsy samples or microscopic organisms). Furthermore, post-sequencing bioinformatic annotation and analyses of mt genomes are time consuming and inefficient. Herein, we describe a high-throughput sequencing and bioinformatic pipeline for mt genomics, which will have implications for the annotation and analysis of other organellar (e.g. plastid or apicoplast genomes) and virus genomes as well as long, contiguous regions in nuclear genomes. We utilize this pipeline to sequence and annotate the complete mt genomes of 12 species of parasitic nematode (order Strongylida) simultaneously, each from an individual organism. These mt genomic data provide a rich source of markers for studies of the systematics and population genetics of a group of socioeconomically important pathogens of humans and other animals.© The Author(s) 2009. Published by Oxford University Press. This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5/uk/) which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. The attached file is the published pdf

Novel inhibitors of the calcineurin/NFATc hub - alternatives to CsA and FK506?

The drugs cyclosporine A (CsA) and tacrolimus (FK506) revolutionized organ transplantation. Both compounds are still widely used in the clinic as well as for basic research, even though they have dramatic side effects and modulate other pathways than calcineurin-NFATc, too. To answer the major open question - whether the adverse side effects are secondary to the actions of the drugs on the calcineurin-NFATc pathway - alternative inhibitors were developed. Ideal inhibitors should discriminate between the inhibition of (i) calcineurin and peptidyl-prolyl cis-trans isomerases (PPIases; the matchmaker proteins of CsA and FK506), (ii) calcineurin and the other Ser/Thr protein phosphatases, and (iii) NFATc and other transcription factors. In this review we summarize the current knowledge about novel inhibitors, synthesized or identified in the last decades, and focus on their mode of action, specificity, and biological effects

(Dujardin, 1845) (Nematoda, Trichostrongyloidea) et autres espèces décrites sous ce nom

Redescription de Molineus patens (Dujardin, 1845) chez l’hôte type Mustela nivalis de France. — Analyse des espèces décrites sous le nom de patens :

Real-time bio-inspired retina simulation software.

The way the retina processes and format visual information contributes, to a large extent, to the efficiency, compaction and reliability of the human visual system, which is of strong interest to artificial vision systems. Based on the transfer function of retinal neurons and their synaptic interaction, our application software computes, in real time, the different outputs of the human retina, from photoreceptors to Magno and Parvo ganglion cells. It is modular and fully configurable so that it can be used in a wide field of applications. A video camera is available to experiment, in live, how the different outputs of the retina reacts to various visual stimulations, and a user interface gives the oportunity to test the effects of retina space and time parameters as well as intensity and contrast local adaptation gain control. Attendees can also bring their own video data to be processed