Методические подходы к определению рационального состава минеральных удобрений

Various methods and approaches to determination of the rational composition of mineral fertilizers are considered. The necessity of use of the ecological component for calculation the optimal set of mineral fertlizers is being grounded. When you are citing the document, use the following link http://essuir.sumdu.edu.ua/handle/123456789/1314

Modeling soil organic carbon dynamics in temperate forests with Yasso07

In a context of global changes, modeling and predicting the dynamics of soil carbon stocks (CSs) in forest ecosystems are vital but challenging. Yasso07 is considered to be one of the most promising models for such a purpose. We examine the accuracy of its prediction of soil carbon dynamics over the whole French metropolitan territory at a decennial timescale. We used data from 101 sites in the RENECOFOR network, which encompasses most of the French temperate forests. These data include (i) the quantity of above-ground litterfall from 1994 to 2008, measured yearly, and (ii) the soil CSs measured twice at an interval of approximately 15 years (once in the early 1990s and around 2010). We used Yasso07 to simulate the annual changes in carbon stocks (ACCs; in tC ha−1 yr−1) for each site and then compared the estimates with actual recorded data. We carried out meta-analyses to reveal the variability in litter biochemistry in different tree organs for conifers and broadleaves. We also performed sensitivity analyses to explore Yasso07's sensitivity to annual litter inputs and model initialization settings. At the national level, the simulated ACCs (+0.00±0.07 tC ha−1 yr−1, mean ± SE) were of the same order of magnitude as the observed ones (+0.34±0.06 tC ha−1 yr−1). However, the correlation between predicted and measured ACCs remained weak (R2<0.1). There was significant overestimation for broadleaved stands and underestimation for coniferous sites. Sensitivity analyses showed that the final estimated CS was strongly affected by settings in the model initialization, including litter and soil carbon quantity and quality and also by simulation length. Carbon quality set with the partial steady-state assumption gave a better fit than the model with the complete steady-state assumption. With Yasso07 as the support model, we showed that there is currently a bottleneck in soil carbon modeling and prediction due to a lack of knowledge or data on soil carbon quality and fine-root quantity in the litter

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water.

BACKGROUND: Having conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider genome hinders our ability to more thoroughly investigate the molecular mechanisms underlying the processes of adaptation and diversification within this group. RESULTS: Here we report the sequencing and manual annotation of the Gerris buenoi (G. buenoi) genome; the first water strider genome to be sequenced thus far. The size of the G. buenoi genome is approximately 1,000 Mb, and this sequencing effort has recovered 20,949 predicted protein-coding genes. Manual annotation uncovered a number of local (tandem and proximal) gene duplications and expansions of gene families known for their importance in a variety of processes associated with morphological and physiological adaptations to a water surface lifestyle. These expansions may affect key processes associated with growth, vision, desiccation resistance, detoxification, olfaction and epigenetic regulation. Strikingly, the G. buenoi genome contains three insulin receptors, suggesting key changes in the rewiring and function of the insulin pathway. Other genomic changes affecting with opsin genes may be associated with wavelength sensitivity shifts in opsins, which is likely to be key in facilitating specific adaptations in vision for diverse water habitats. CONCLUSIONS: Our findings suggest that local gene duplications might have played an important role during the evolution of water striders. Along with these findings, the sequencing of the G. buenoi genome now provides us the opportunity to pursue exciting research opportunities to further understand the genomic underpinnings of traits associated with the extreme body plan and life history of water striders

The genome of the water strider Gerris buenoi reveals expansions of gene repertoires associated with adaptations to life on the water

Background: Having conquered water surfaces worldwide, the semi-aquatic bugs occupy ponds, streams, lakes, mangroves, and even open oceans. The diversity of this group has inspired a range of scientific studies from ecology and evolution to developmental genetics and hydrodynamics of fluid locomotion. However, the lack of a representative water strider genome hinders our ability to more thoroughly investigate the molecular mechanisms underlying the processes of adaptation and diversification within this group. Results: Here we report the sequencing and manual annotation of the Gerris buenoi (G. buenoi) genome; the first water strider genome to be sequenced thus far. The size of the G. buenoi genome is approximately 1,000Mb, and this sequencing effort has recovered 20,949 predicted protein-coding genes. Manual annotation uncovered a number of local (tandem and proximal) gene duplications and expansions of gene families known for their importance in a variety of processes associated with morphological and physiological adaptations to a water surface lifestyle. These expansions may affect key processes associated with growth, vision, desiccation resistance, detoxification, olfaction and epigenetic regulation. Strikingly, the G. buenoi genome contains three insulin receptors, suggesting key changes in the rewiring and function of the insulin pathway. Other genomic changes affecting with opsin genes may be associated with wavelength sensitivity shifts in opsins, which is likely to be key in facilitating specific adaptations in vision for diverse water habitats. Conclusions: Our findings suggest that local gene duplications might have played an important role during the evolution of water striders. Along with these findings, the sequencing of the G. buenoi genome now provides us the opportunity to pursue exciting research opportunities to further understand the genomic underpinnings of traits associated with the extreme body plan and life history of water striders

Molecular evolutionary trends and feeding ecology diversification in the Hemiptera, anchored by the milkweed bug genome.

BACKGROUND: The Hemiptera (aphids, cicadas, and true bugs) are a key insect order, with high diversity for feeding ecology and excellent experimental tractability for molecular genetics. Building upon recent sequencing of hemipteran pests such as phloem-feeding aphids and blood-feeding bed bugs, we present the genome sequence and comparative analyses centered on the milkweed bug Oncopeltus fasciatus, a seed feeder of the family Lygaeidae. RESULTS: The 926-Mb Oncopeltus genome is well represented by the current assembly and official gene set. We use our genomic and RNA-seq data not only to characterize the protein-coding gene repertoire and perform isoform-specific RNAi, but also to elucidate patterns of molecular evolution and physiology. We find ongoing, lineage-specific expansion and diversification of repressive C2H2 zinc finger proteins. The discovery of intron gain and turnover specific to the Hemiptera also prompted the evaluation of lineage and genome size as predictors of gene structure evolution. Furthermore, we identify enzymatic gains and losses that correlate with feeding biology, particularly for reductions associated with derived, fluid nutrition feeding. CONCLUSIONS: With the milkweed bug, we now have a critical mass of sequenced species for a hemimetabolous insect order and close outgroup to the Holometabola, substantially improving the diversity of insect genomics. We thereby define commonalities among the Hemiptera and delve into how hemipteran genomes reflect distinct feeding ecologies. Given Oncopeltus's strength as an experimental model, these new sequence resources bolster the foundation for molecular research and highlight technical considerations for the analysis of medium-sized invertebrate genomes

Extending harmonized national forest inventory herb layer vegetation cover observations to derive comprehensive biomass estimates

Abstract Background National forest inventories (NFI) have a long history providing data to obtain nationally representative and accurate estimates of growing stock. Today, in most NFIs additional data are collected to provide information on a range of forest ecosystem functions such as biodiversity, habitat, nutrient and carbon dynamics. An important driver of nutrient and C cycling is decomposing biomass produced by forest vegetation. Several studies have demonstrated that understory vegetation, particularly annual plant litter of the herb layer can contribute significantly to nutrient and C cycling in forests. A methodology to obtain comprehensive, consistent and nationally representative estimates of herb layer biomass on NFI plots could provide added value to NFIs by complementing the existing strong basis of biomass estimates of the tree and tall shrub layer. The study was based on data from the Swiss NFI since it covers a large environmental gradient, which extends its applicability to other NFIs. Results Based on data from 405 measurements in nine forest strata, a parsimonious model formulation was identified to predict total and non-ligneous herb layer biomass. Besides herb layer cover, elevation was the main statistically significant explanatory variable for biomass. The regression models accurately predicted biomass based on absolute percentage cover (for total biomass: R 2 = 0.65, p = 0; for non-ligneous biomass: R 2 = 0.76; p = 0) as well as on cover classes (R 2 = 0.83; p = 0; and R 2 = 0.79, p = 0), which are typically used in NFIs. The good performance was supported by the verification with data from repeated samples. For the 2nd, 3rd, and 4th Swiss NFI estimates of non-ligneous above-ground herb layer biomass 586.6 ± 7.7, 575.2 ± 7.6, and 586.7 ± 7.9 kg·ha− 1, respectively. Conclusions The study presents a methodology to obtain herb layer biomass estimates based on a harmonized and standardized attribute available in many NFIs. The result of this study was a parsimonious model requiring only elevation data of sample plots in addition to NFI cover estimates to provide unbiased estimates at the national scale. These qualities are particularly important as they ensure accurate, consistent, and comparable results

Dynamics of dead wood decay in Swiss forests

Abstract Background Forests are an important component of the global carbon (C) cycle and can be net sources or sinks of CO2, thus mitigating or exacerbating the effects of anthropogenic greenhouse gas emissions. While forest productivity is often inferred from national-scale yield tables or from satellite products, forest C emissions resulting from dead organic matter decay are usually simulated, therefore it is important to ensure the accuracy and reliability of a model used to simulate organic matter decay at an appropriate scale. National Forest Inventories (NFIs) provide a record of carbon pools in ecosystem components, and these measurements are essential for evaluating rates and controls of C dynamics in forest ecosystems. In this study we combine the observations from the Swiss NFIs and machine learning techniques to quantify the decay rates of the standing snags and downed logs and identify the main controls of dead wood decay. Results We found that wood decay rate was affected by tree species, temperature, and precipitation. Dead wood originating from Fagus sylvatica decayed the fastest, with the residence times ranging from 27 to 54 years at the warmest and coldest Swiss sites, respectively. Hardwoods at wetter sites tended to decompose faster compared to hardwoods at drier sites, with residence times 45–92 and 62–95 years for the wetter and drier sites, respectively. Dead wood originating from softwood species had the longest residence times ranging from 58 to 191 years at wetter sites and from 78 to 286 years at drier sites. Conclusions This study illustrates how long-term dead wood observations collected and remeasured during several NFI campaigns can be used to estimate dead wood decay parameters, as well as gain understanding about controls of dead wood dynamics. The wood decay parameters quantified in this study can be used in carbon budget models to simulate the decay dynamics of dead wood, however more measurements (e.g. of soil C dynamics at the same plots) are needed to estimate what fraction of dead wood is converted to CO2, and what fraction is incorporated into soil

Towards Harmonizing Leaf Litter Decomposition Studies Using Standard Tea Bags—A Field Study and Model Application

Decomposition of plant litter is a key process for the transfer of carbon and nutrients in ecosystems. Carbon contained in the decaying biomass is released to the atmosphere as respired CO2, and may contribute to global warming. Litterbag studies have been used to improve our knowledge of the drivers of litter decomposition, but they lack comparability because litter quality is plant species-specific. The use of commercial tea bags as a standard substrate was suggested in order to harmonize studies, where green tea and rooibos represent more labile and more recalcitrant C compounds as surrogates of local litter. Here we examine the potential of the use of standardized material for improving our understanding of litter decomposition across climate regions, and to further develop pertinent models. We measured the decomposition of incubated local and standard litters over two years along an elevation gradient in the Austrian Limestone Alps. The similar response to changes in temperature and precipitation of the pairs of local and standard litter—i.e., Fagus sylvatica and green tea, and Pinus nigra and rooibos tea, respectively—suggests the suitability of the standard litters for further examining the role of environmental drivers of decomposition. Harmonized data obtained from standardized litter experiments would provide a key prerequisite for further developing simulation models for the estimation of the C balance of ecosystem litter pools