Soothing signals: transplacental transmission of resistance to asthma and allergy

The progressive rise in the prevalence of allergic diseases since the 1970s is widely attributed to diminished exposure to microbial stimuli, resulting in dysregulated immune functions during early life. Most studies investigating the mechanism behind this phenomenon have focused on postnatal microbial exposure. But emerging evidence suggests that such programming may also occur in the developing fetus as a result of microbial stimulation of the pregnant mother

Moments of the Proton F2 Structure Function at Low Q2

The Q^2 dependence of inclusive electron-proton scattering F_2 structure function data in both the nucleon resonance region and the deep inelastic region, at momentum transfers below 5 (GeV/c)^2, is investigated. Moments of F_2 are constructed, down to momentum transfers of Q^2 ~ 0.1 (GeV/c)^2. The second moment is only slowly varying with Q^2 down to Q^2 ~ 1 (GeV/c)^2, which is a reflection of duality. Below Q^2 of 1 (GeV/c)^2, the Q^2 dependence of the moments is predominantly governed by the elastic contribution, whereas the inelastic channels still seem governed by local duality.Comment: 11 page paper, 1 LaTeX file, 10 postscript figure file

Mantle and crustal sources in the genesis of late-hercynian granitoids (NW Portugal) : geochemical and Sr-Nd isotopic constraints

Large volumes of granitoids were emplaced in the Hercynian Central Iberian Zone during the last ductile deformation phase (D3, 300-320 Ma). The biotite-rich granitoids are the most abundant: (1) syn-D3 granodiorites-monzogranites (313-319 Ma) with calc-alkaline and aluminopotassic affinities; (2) late-D3 granodiorites-monzogranites (306-311 Ma), related to subalkaline and aluminopotassic series. These granitoids are associated with coeval gabbro-norite to granodiorite bodies and/or mafic microgranular enclaves. Both granitoids and basic-intermediate rocks show petrological, geochemical and isotopic evidence of interaction between felsic and mafic magmas. The mantle-derived melts, represented by shoshonitic gabbro-norites, were probably derived from an enriched and isotopically homogeneous source (Srl = 0.7049 to 0.7053, eNd= -2.1 to -2.5). In some syn- and late-D3 plutons there are evidences of essentially crustal granites, represented by moderately peraluminous monzogranites of aluminopotassic affinity. They have similar Nd model ages (1.4 Ga) but different isotopic compositions (Srl = 0.7089 to 0.7106, eNd= -5.6 to -6.8), revealing a heterogeneous crust. Potential protoliths are metasedimentary (immature sediments) and/or fclsic meta-igneous lower crust materials. Large amounts of hybrid magmas were generated by the interaction of these coeval mantle- and crust-derived liquids, giving rise to slightly peraluminous monzogranites/granodiorites of calc-alkaline and subalkaline affinities, which display more depleted isotopic compositions than the crustal end-members (Sr, = 0.7064 to 0.7085, eNd = -4.4 to -6.2). Petrogenetic processes involving mingling and/or mixing and fractional crystallization (at variable degrees) in multiple reservoirs are suggested. A major crustal growth event occurred in late-Hercynian times (305-320 Ma) related to the input of juvenile mantle magmas and leading to the genesis of composite calc-alkaline and subalkaline plutons, largely represented in the Central Iberian Zone.Financial support was provided by FCT (project PRAXIS 2/2.1/391/94), France-Portugal Scientific Cooperation Programs and by the University of Minho

The genomes of two key bumblebee species with primitive eusocial organization

Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats. Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits. Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation

Listening to patients: using verbal data in the validation of the Aberdeen Measures of Impairment, Activity Limitation and Participation Restriction (Ab-IAP)

Peer reviewedPublisher PD

Alu pair exclusions in the human genome

<p>Abstract</p> <p>Background</p> <p>The human genome contains approximately one million <it>Alu </it>elements which comprise more than 10% of human DNA by mass. <it>Alu </it>elements possess direction, and are distributed almost equally in positive and negative strand orientations throughout the genome. Previously, it has been shown that closely spaced <it>Alu </it>pairs in opposing orientation (inverted pairs) are found less frequently than <it>Alu </it>pairs having the same orientation (direct pairs). However, this imbalance has only been investigated for <it>Alu </it>pairs separated by 650 or fewer base pairs (bp) in a study conducted prior to the completion of the draft human genome sequence.</p> <p>Results</p> <p>We performed a comprehensive analysis of all (> 800,000) full-length <it>Alu </it>elements in the human genome. This large sample size permits detection of small differences in the ratio between inverted and direct <it>Alu </it>pairs (I:D). We have discovered a significant depression in the full-length <it>Alu </it>pair I:D ratio that extends to repeat pairs separated by ≤ 350,000 bp. Within this imbalance bubble (those <it>Alu </it>pairs separated by ≤ 350,000 bp), direct pairs outnumber inverted pairs. Using PCR, we experimentally verified several examples of inverted <it>Alu </it>pair exclusions that were caused by deletions.</p> <p>Conclusions</p> <p>Over 50 million full-length <it>Alu </it>pairs reside within the I:D imbalance bubble. Their collective impact may represent one source of <it>Alu </it>element-related human genomic instability that has not been previously characterized.</p

The UCSC Genome Browser Database: 2008 update

The University of California, Santa Cruz, Genome Browser Database (GBD) provides integrated sequence and annotation data for a large collection of vertebrate and model organism genomes. Seventeen new assemblies have been added to the database in the past year, for a total coverage of 19 vertebrate and 21 invertebrate species as of September 2007. For each assembly, the GBD contains a collection of annotation data aligned to the genomic sequence. Highlights of this year's additions include a 28-species human-based vertebrate conservation annotation, an enhanced UCSC Genes set, and more human variation, MGC, and ENCODE data. The database is optimized for fast interactive performance with a set of web-based tools that may be used to view, manipulate, filter and download the annotation data. New toolset features include the Genome Graphs tool for displaying genome-wide data sets, session saving and sharing, better custom track management, expanded Genome Browser configuration options and a Genome Browser wiki site. The downloadable GBD data, the companion Genome Browser toolset and links to documentation and related information can be found at: http://genome.ucsc.edu/

Asymptomatic school-aged children are important drivers of malaria transmission in a high endemicity setting in Uganda.

Achieving malaria elimination requires a better understanding of the transmissibility of human infections in different transmission settings. This study aimed to characterize the human infectious reservoir in a high endemicity setting in eastern Uganda, using gametocyte quantification and mosquito feeding assays. In asymptomatic infections, gametocyte densities were positively associated with the proportion of infected mosquitoes (β=1.60, 95%CI 1.32-1.92, p < 0.0001). Combining transmissibility and abundance in the population, symptomatic and asymptomatic infections were estimated to contribute to 5.3% and 94.7% of the infectious reservoir, respectively. School-aged children (5-15 years-old) contributed to 50.4% of transmission events and were important drivers of malaria transmission

Evidence for Diffractive Charm Production in nu_mu Fe and nubar_mu Fe Scattering at the Tevatron

We present evidence for the diffractive processes nu_mu Fe -> mu^- D_s^+ (D_s^*+) Fe and nubar_mu Fe -> mu^+ D_s^- (D_s^*-) Fe using the Fermilab SSQT neutrino beam and the Lab E neutrino detector. We observe the neutrino trident reactions nu_mu Fe -> nu_mu mu^- mu^+ Fe and nubar_mu Fe -> nubar_mu mu^+ mu^- Fe at rates consistent with Standard Model expectations. We see no evidence for neutral-current production of J/psi via either diffractive or deep inelastic scattering mechanisms.Comment: 13 pages, submitted to Phys. Rev. D, FERMILAB-Pub-99/269-