Eta Car through the eyes of interferometers

The core of the nebula surrounding Eta Carinae has recently been observed with VLT/NACO, VLTI/VINCI, VLTI/MIDI and VLTI/AMBER in order to spatially and spectrally constrain the warm dusty environment and the central object. Narrow-band images at 3.74 and 4.05 micron reveal the structured butterfly-shaped dusty environment close to the central star with an unprecedented spatial resolution of about 60 mas. VINCI has resolved the present-day stellar wind of Eta Carinae on a scale of several stellar radii owing to the spatial resolution of the order of 5 mas (11 AU). The VINCI observations show that the object is elongated with a de-projected axis ratio of approximately 1.5. Moreover the major axis is aligned with that of the large bipolar nebula that was ejected in the 19th century. Fringes have also been obtained in the Mid-IR with MIDI using baselines of 75m. A peak of correlated flux of 100 Jy is detected 0.3" south-east from the photocenter of the nebula at 8.7 micron is detected. This correlated flux is partly attributed to the central object but it is worth noting that at these wavelengths, virtually all the 0.5" x 0.5" central area can generate detectable fringes witnessing the large clumping of the dusty ejecta. These observations provide an upper limit for the SED of the central source from 3.8 to 13.5 micron and constrain some parameters of the stellar wind which can be compared to Hillier's model. Lastly, we present the great potential of the AMBER instrument to study the numerous near-IR emissive lines from the star and its close vicinity. In particular, we discuss its ability to detect and follow the faint companion.Comment: 12 pages, published in proceedings of the ESO-EII Workshop "The power of optical / IR interferometry

High angular resolution N-band observation of the silicate carbon star IRAS08002-3803 with the VLTI/MIDI instrument

We present the results of N-band spectro-interferometric observations of the silicate carbon star IRAS08002-3803 with the MID-infrared Interferometric instrument (MIDI) at the Very Large Telescope Interferometer (VLTI) of the European Southern Observatory (ESO). The observations were carried out using two unit telescopes (UT2 and UT3) with projected baseline lengths ranging from 39 to 47 m. Our observations of IRAS08002-3803 have spatially resolved the dusty environment of a silicate carbon star for the first time and revealed an unexpected wavelength dependence of the angular size in the N band: the uniform-disk diameter is found to be constant and ~36 mas (72 Rstar) between 8 and 10 micron, while it steeply increases longward of 10 micron to reach ~53 mas (106 Rstar) at 13 micron. Model calculations with our Monte Carlo radiative transfer code show that neither spherical shell models nor axisymmetric disk models consisting of silicate grains alone can simultaneously explain the observed wavelength dependence of the visibility and the spectral energy distribution (SED). We propose that the circumstellar environment of IRAS08002-3803 may consist of two grain species coexisting in the disk: silicate and a second grain species, for which we consider amorphous carbon, large silicate grains, and metallic iron grains. Comparison of the observed visibilities and SED with our models shows that such disk models can fairly -- though not entirely satisfactorily -- reproduce the observed SED and N-band visibilities. Our MIDI observations and the radiative transfer calculations lend support to the picture where oxygen-rich material around IRAS08002-3803 is stored in a circumbinary disk surrounding the carbon-rich primary star and its putative low-luminosity companion.Comment: 15 pages, 8 figures, accepted for publication in A&

Asymmetric silicate dust distribution toward the silicate carbon star BM Gem

Silicate carbon stars show the 10 micron silicate emission, despite their carbon-rich photospheres. They are considered to have circumbinary or circum-companion disks, which serve as a reservoir of oxygen-rich material shed by mass loss in the past. We present N-band spectro-interferometric observations of the silicate carbon star BM Gem using MIDI at the Very Large Telescope Interferometer (VLTI). Our aim is to probe the spatial distribution of oxygen-rich dust with high spatial resolution. BM Gem was observed with VLTI/MIDI at 44--62 m baselines using the UT2-UT3 and UT3-UT4 baseline configurations. The N-band visibilities observed for BM Gem show a steep decrease from 8 to ~10 micron and a gradual increase longward of ~10 micron, reflecting the optically thin silicate emission feature emanating from sub-micron-sized amorphous silicate grains. The differential phases obtained at baselines of ~44--46 m show significant non-zero values (~ -70 degrees) in the central part of the silicate emission feature between ~9 and 11 micron, revealing a photocenter shift and the asymmetric nature of the silicate emitting region. The observed N-band visibilities and differential phases can be fairly explained by a simple geometrical model in which the unresolved star is surrounded by a ring with azimuthal brightness modulation. The best-fit model is characterized by a broad ring (~70 mas across at 10 micron) with a bright region which is offset from the unresolved star by ~20 mas at a position angle of ~280 degrees. This model can be interpreted as a system with a circum-companion disk and is consistent with the spectroscopic signatures of an accretion disk around an unseen companion recently discovered in the violet spectrum of BM Gem.Comment: 7 pages, 3 figures, accepted for publication in A&

Biopsy confirmation of metastatic sites in breast cancer patients:clinical impact and future perspectives

Determination of hormone receptor (estrogen receptor and progesterone receptor) and human epidermal growth factor receptor 2 status in the primary tumor is clinically relevant to define breast cancer subtypes, clinical outcome,and the choice of therapy. Retrospective and prospective studies suggest that there is substantial discordance in receptor status between primary and recurrent breast cancer. Despite this evidence and current recommendations,the acquisition of tissue from metastatic deposits is not routine practice. As a consequence, therapeutic decisions for treatment in the metastatic setting are based on the features of the primary tumor. Reasons for this attitude include the invasiveness of the procedure and the unreliable outcome of biopsy, in particular for biopsies of lesions at complex visceral sites. Improvements in interventional radiology techniques mean that most metastatic sites are now accessible by minimally invasive methods, including surgery. In our opinion, since biopsies are diagnostic and changes in biological features between the primary and secondary tumors can occur, the routine biopsy of metastatic disease needs to be performed. In this review, we discuss the rationale for biopsy of suspected breast cancer metastases, review issues and caveats surrounding discordance of biomarker status between primary and metastatic tumors, and provide insights for deciding when to perform biopsy of suspected metastases and which one (s) to biopsy. We also speculate on the future translational implications for biopsy of suspected metastatic lesions in the context of clinical trials and the establishment of bio-banks of biopsy material taken from metastatic sites. We believe that such bio-banks will be important for exploring mechanisms of metastasis. In the future,advances in targeted therapy will depend on the availability of metastatic tissue

The sub-arcsecond dusty environment of Eta Carinae

The core of the nebula surrounding Eta Carinae has been observed with the VLT Adaptive Optics system NACO and with the interferometer VLTI/MIDI to constrain spatially and spectrally the warm dusty environment and the central object. In particular, narrow-band images at 3.74 and 4.05 micron reveal the butterfly shaped dusty environment close to the central star with unprecedented spatial resolution. A void whose radius corresponds to the expected sublimation radius has been discovered around the central source. Fringes have been obtained in the Mid-IR which reveal a correlated flux of about 100Jy situated 0.3" south-east of the photocenter of the nebula at 8.7 micron, which corresponds with the location of the star as seen in other wavelengths. This correlated flux is partly attributed to the central object, and these observations provide an upper limit for the SED of the central source from 2.2 to 13.5 micron. Moreover, we have been able to spectrally disperse the signal from the nebula itself at PA=318 degree, i.e. in the direction of the bipolar nebula 310 degree) within the MIDI field of view of 3". A large amount of corundum (Al2O3) is discovered, peaking at 0.6-1.2" south-east from the star, whereas the dust content of the Weigelt blobs is dominated b silicates. We discuss the mechanisms of dust formation which are closely related to the geometry of this Butterfly nebulae

TRY plant trait database - enhanced coverage and open access

Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

Role of miR-10b in breast cancer metastasis

Ninety percent of cancer-related mortality is caused by metastasis. Current cancer treatments can control many primary tumors but rarely stop the metastatic spread. Accumulating evidence demonstrates that miRNAs are involved in cancer initiation and progression. Furthermore, several miRNAs have been found to regulate metastasis. In particular, recent studies provide the first functional evidence that overexpression of a specific miRNA, miR-10b, can contribute to the development of metastasis, which can be exploited therapeutically in treating breast cancer metastasis in mice. Further in-depth analysis should provide more precise evaluation of the roles, mechanisms, and therapeutic utility of this miRNA in breast cancer

A taxonomy of epithelial human cancer and their metastases

<p>Abstract</p> <p>Background</p> <p>Microarray technology has allowed to molecularly characterize many different cancer sites. This technology has the potential to individualize therapy and to discover new drug targets. However, due to technological differences and issues in standardized sample collection no study has evaluated the molecular profile of epithelial human cancer in a large number of samples and tissues. Additionally, it has not yet been extensively investigated whether metastases resemble their tissue of origin or tissue of destination.</p> <p>Methods</p> <p>We studied the expression profiles of a series of 1566 primary and 178 metastases by unsupervised hierarchical clustering. The clustering profile was subsequently investigated and correlated with clinico-pathological data. Statistical enrichment of clinico-pathological annotations of groups of samples was investigated using Fisher exact test. Gene set enrichment analysis (GSEA) and DAVID functional enrichment analysis were used to investigate the molecular pathways. Kaplan-Meier survival analysis and log-rank tests were used to investigate prognostic significance of gene signatures.</p> <p>Results</p> <p>Large clusters corresponding to breast, gastrointestinal, ovarian and kidney primary tissues emerged from the data. Chromophobe renal cell carcinoma clustered together with follicular differentiated thyroid carcinoma, which supports recent morphological descriptions of thyroid follicular carcinoma-like tumors in the kidney and suggests that they represent a subtype of chromophobe carcinoma. We also found an expression signature identifying primary tumors of squamous cell histology in multiple tissues. Next, a subset of ovarian tumors enriched with endometrioid histology clustered together with endometrium tumors, confirming that they share their etiopathogenesis, which strongly differs from serous ovarian tumors. In addition, the clustering of colon and breast tumors correlated with clinico-pathological characteristics. Moreover, a signature was developed based on our unsupervised clustering of breast tumors and this was predictive for disease-specific survival in three independent studies. Next, the metastases from ovarian, breast, lung and vulva cluster with their tissue of origin while metastases from colon showed a bimodal distribution. A significant part clusters with tissue of origin while the remaining tumors cluster with the tissue of destination.</p> <p>Conclusion</p> <p>Our molecular taxonomy of epithelial human cancer indicates surprising correlations over tissues. This may have a significant impact on the classification of many cancer sites and may guide pathologists, both in research and daily practice. Moreover, these results based on unsupervised analysis yielded a signature predictive of clinical outcome in breast cancer. Additionally, we hypothesize that metastases from gastrointestinal origin either remember their tissue of origin or adapt to the tissue of destination. More specifically, colon metastases in the liver show strong evidence for such a bimodal tissue specific profile.</p

Choosing the right cell line for breast cancer research

Breast cancer is a complex and heterogeneous disease. Gene expression profiling has contributed significantly to our understanding of this heterogeneity at a molecular level, refining taxonomy based on simple measures such as histological type, tumour grade, lymph node status and the presence of predictive markers like oestrogen receptor and human epidermal growth factor receptor 2 (HER2) to a more sophisticated classification comprising luminal A, luminal B, basal-like, HER2-positive and normal subgroups. In the laboratory, breast cancer is often modelled using established cell lines. In the present review we discuss some of the issues surrounding the use of breast cancer cell lines as experimental models, in light of these revised clinical classifications, and put forward suggestions for improving their use in translational breast cancer research

Dissecting the transcriptional networks underlying breast cancer: NR4A1 reduces the migration of normal and breast cancer cell lines

Introduction: Breast cancer currently accounts for more than one-quarter of all female cancers and, despite the great progress in treatment observed in the past few years, the need for identification of new gene targets that can be used for diagnosis, prognosis and therapy is evident. A previous study identified the transcription factor NR4A1 as a gene upregulated in primary breast cancer compared with normal tissue by microarray analysis and sequencing technologies. The purpose of the study was to identify the role of NR4A1 in normal mammary epithelial and breast cancer cell biology.Methods: NR4A1 expression in breast tumours was assessed by semiquantitative and real-time PCR using RNA from normal and tumour samples or breast cancer cell lines. Immunohistochemistry on tissue microarrays was performed to check NR4A1 protein expression in breast tumours. MCF-10A and 226L normal mammary epithelial cells as well as the tumour lines PMC42, ZR-75-1 and MDA-MB-231 were transduced with full-length NR4A1, and the ability of NR4A1-overexpressing cells to migrate was tested using scratch wound or transwell migration assays. Proliferation was measured using the MTT and BrdU assays, while apoptosis was determined by the Annexin V assay. The ability of the cells to adhere to extracellular matrix was tested by adhesion assays and integrin cell surface expression was measured by flow cytometry. Activation of the FAK as well as ERK1/2 and PI3K pathways was checked by western blotting.Results: Breast tissue microarray analysis showed NR4A1 expression in primary tumours, which was reduced in higher grade and metastatic tumours. Ectopic expression of NR4A1 in MCF-10A, 226L, PMC42 and ZR-75-1 cells led to reduced ability of the cells to migrate, while no differences were observed in their proliferation and apoptotic index. NR4A1 expression altered the ability of the MCF-10A cells to adhere to the extracellular matrix and affected cell surface expression of integrins.Conclusions: NR4A1 acts as an antimigratory factor in two normal mammary epithelial and two breast cancer cell lines tested. It is therefore possible that NR4A1 acts as an antimigratory factor in breast tumours, and further studies should be conducted to understand the mechanisms involved