50 research outputs found

    Screening a variable germplasm collection of Cucumis melo L. for seedling resistance to Macrophomina phaseolina

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    [EN] We evaluate the seedling resistance to charcoal rot caused by Macrophomina phaseolina in ninety-seven Cucumis melo accessions, from different geographical origins and five F1 generations, derived from crosses of five accessions selected for their resistance. Artificial inoculations with the toothpick method, previously reported to be useful for predicting shoot resistance, were performed, and plants were scored using a scale of disease severity. The average disease severity was calculated for each accession and was used to cluster the accession in five reaction classes. The screening revealed that sources of natural resistance to this fungus are limited. However, seedlings of seven accessions of different botanic groups displayed a resistant response to the stem inoculation, one cantaloup from Israel, one conomon accession from Korea, two wild agrestis and one acidulus from Africa, and two dudaim accessions from Middle East. The response of the F1 progenies varied from susceptibility to high resistance, the latter in progenies from the two agrestis wild types. These results suggest differences in the genetic basis of the resistance in the different selected sources. The resistant accessions are suggested to be screened under field conditions to confirm the level of resistance at adult plant stage and under stressful conditions.This work has been partially funded by the Project No 294/13 of the Coordenacao de Aperfeicoamento de Pessoal de Nivel Superior CAPES (Brazil). M. M. Q. Ambrosio and A. C. A. Dantas thank CAPES for their research fellowships. B.Pico thanks the Programa Hispano-Brasileno de Cooperacion Universitaria HBP2012-008 and PHBP14/00021 and to the MINECO project AGL2014-53398-C2-2-R.Ambrosio, MM.; Dantas, AC.; Martinez Perez, EM.; Medeiros, AC.; Sousa Nunes, GHD.; PicĂł Sirvent, MB. (2015). Screening a variable germplasm collection of Cucumis melo L. for seedling resistance to Macrophomina phaseolina. Euphytica. 206(2):287-300. https://doi.org/10.1007/s10681-015-1452-xS2873002062Aegerter BJ, Gordon TR, Davis RM (2000) Occurrence and pathogenicity of fungi associated with melon root rot and vine decline in California. Plant Dis 84:224–230Almeida AMR, Abdelnoor RV, Arias CAA, Carvalho VP, Jacoud Filho DS, Marin SRR, Benato LC, Pinto MC, Carvalho CGP (2003) Genotypic diversity among Brazilian isolates of Macrophomina phaseolina revealed by RAPD. Fitopatol Bras 28:279–285Almeida AMRA, Seixas CDSS, Farias JRBF, Oliveira MCN, Franchini JC, Debiasi H, Costa JM, GaudĂȘncio CA (2014) Macrophomina phaseolina em soja. Embrapa Soja, Londrina, p 30pAmbrĂłsio MMQ, Bueno CJ, Padovani CR, Souza NL (2009) SobrevivĂȘncia de fungos fitopatogĂȘnicos habitantes do solo, em microcosmo, simulando solarização com prĂ©via incorporação de materiais orgĂąnicos. 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Crop Prot 35:58–63Cohen R, Tyutyunik J, Fallik E, Oka Y, Tadmor Y, Edelstein M (2014) Phytopathological evaluation of exotic watermelon germplasm as a basic for rootstock breeding. Sci Hortic 165:203–210Dantas AMM, AmbrĂłsio MMQ, Nascimento SRC, Senhor RF, CĂ©zar MA, Lima JSS (2013) Incorporation of plant materials in the control of root pathogens in mushmelon. Revista Agro@ambiente on-line 7(3):338–344Davis RM, Turini TA, Aegerter BJ, Stapleton JJ (2009) Cucurbits charcoal rot, pathogen: Macrophomina phaseolina. UC IPM online. http://www.totoagriculture.org/PDFs/PlantDiseasesPests/1026.pdf . Accessed 25 Feb 2015Dias RCS, PicĂł B, Espinos A, Nuez F (2004) Resistance to melĂłn vine decline derived from Cucumis melo ssp. agrestis: genetic analysis of root structure and root response. Plant Breed 123:66–72Diourte M, Starr JL, Jegger MJ, Stack JP, Rosenow DT (1995) Charcoal rot (Macrophomina phaseolina) resistance and the effect of water stress on disease development in Sorghum. Plant Pathol 44:196–202Esteras C, Pascual B, Nuez F, PicĂł MB (2009) Use of ecotilling to identify natural allelic variants of melon candidate genes involved in fuit ripening. 8th Plant Genomics European Meeting (Plant GEM 8) Istambul, 213Esteras C, Formisano G, Roig C, DĂ­az A, Blanca J, Garcia-Mas J, GĂłmez-GuillamĂłn ML, LĂłpez-SesĂ© AI, LĂĄzaro A, Monforte AJ, PicĂł B (2013) SNP genotyping in melons: genetic variation, population structure, and linkage disequilibrium. Theor Appl Genet 126(5):1285–1303. doi: 10.1007/s00122-013-2053-5Fang X, Phillips D, Li H, Sivasithamparama K, Barbettia MJ (2011) Comparisons of virulence of pathogens associated with crown and root diseases of strawberry in Western Australia with special reference to the effect of temperature. Sci Hortic 131(22):39–48Food and Agriculture Organization (2014) Faostat. http://faostat.fao.org/site/567/default.aspx#ancor . 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BMC Genomic 13(493):1–16Jacob CJ, Krarup C, DĂ­az A, Latorre BA (2013) A severe outbreak of charcoal rot in cantaloupe melon caused by Macrophomina phaseolina in Chile. Plant Dis 97(1):141Kaur S, Dhillon GS, Brar SK, Vallad GE, Chand R, Chauhan VB (2012) Emerging phytopathogen Macrophomina phaseolina: biology, economic importance and current diagnostic trends. Crit Rev Microbiol 38(1):136–151Keeling A (1982) Seedling test for resistance to soybean stem canker caused by diaporthe phaseolorum var. caulivora. Phytopathology 72(7):807–809Khan SN (2007) Macrophomina phaseolina as causal agent for charcoal rot of sunflower. Mycopath 5(2):111–118Khan SH, Shuaib M (2007) Identification of sources of resistance in Mung bean (Vigna radiata L.) against Charcoal Rot Macrophomina phaseolina (Tassi) Goid. Afr Crop Sci 8:2101–2102Krikun J, Orion D, Nachmias A, Reuveni R (1982) The role of soilborne pathogens under conditions of intensive agricultura. 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J Nematol 26(4S):573–586Pitrat M (2008) Melon. In: Prohens J, Nuez F (eds) Handbook of plant breeding. Springer, New York, pp 283–315Purkayastha S, Kaur B, Dilbaghi N, Chaudhury A (2006) Characterization of Macrophomina phaseolina, the charcoal rot pathogen of cluster bean, using conventional techniques and PCR-based molecular markers. Plant Pathol 55:106–116. doi: 10.1111/j.1365-3059.2005.01317.xRadwan O, Rouhana LV, Hartman GL, Korban SS (2014) Genetic mechanisms of host-pathogen interactions for charcoal rot in soybean. Plant Mol Biol Report 32(3):617–629Ravf BA, Ahmad I (1998) Studies on correlation of seed infection to field incidence of Alternaria alternate and Macrophomina phaseolina in Sunflower. 13th Iranian Plant Protection Congress-Karaj, p 113Roustaee A, Reyhan MK, Jafari M (2011) Study of interaction between salinity and charcoal rot diseases of melon (Macrophomina phaseolina) in Semnan and Garmsar. Desert 16(2):175–218Salari M, Panjehkeh N, Nasirpoor Z, Abkhoo J (2012) Reaction of melĂłn (Cucumis melo L.) cultivars to soil-borne plant pathogenic fungi in Iran. Afr J Biotecnol 11(87):15324–15329Sales R Jr, Oliveira OF, Medeiros EV, GuimarĂŁes IM, Correia KC, Michereff SJ (2012) Ervas daninhas como hospedeiras alternativas de patĂłgenos causadores do colapso do meloeiro. Rev CiĂȘnc Agron 43(1):195–198Sas Institute (2000) Sas/Stat userÂŽs guide: statistics, version 8.01, v. 2, 4. SAS Institute, Inc, CaryScandiani MM, Ruberti DS, Giorda LM, Pioli RN, Luque AG, Bottai H, Ivancovich JJ, Aoki T, OÂŽDonnell K (2011) Comparison of inoculation methods for characterizing relative aggressiveness of two soybean sudden-death syndrome pathogens, Fusarium virguliforme and F. tucumaniae. Trop Plant Pathol 36(3):133–140Scott AJ, Knott MA (1974) Cluster analysis method for grouping means in the analysis of variance. Biometrics 30(3):507–512Sebastian P, Schaefer H, Telford IRH, Renner SS (2010) Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia. Proc Natl Acad Sci 107:14269–14273Sharmishtha P, Bhavneet K, Neeraj D, Ashok C (2006) Evaluation of cluster bean genotypes for resistance to charcoal rot caused by Macrophomina phaseolina using different host inoculation methods pages. J Crop Improv 15(1):67–79Shekhar M, Sharma RC, Singh L, Dutta R (2006) Morphological and pathogenic variability of Macrophomina phaseolina (Tassi.) Goid Incitant of charcoal rot of maize in India. Indian Phytopath 59(3):294–298Stapleton JJ (2000) Soil solarization in various agricultural production systems. Crop Prot 19:837–841Twizeyimana M, Hill CB, Pawlowski M, Paul C, Hartman GL (2012) A cut-stem inoculation technique to evaluate soybean for resistance to Macrophomina phaseolina. 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    Energy efficiency embedded service lifecycle: Towards an energy efficient cloud computing architecture

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    The paper argues the need to provide novel methods and tools to support software developers aiming to optimise energy efficiency and minimise the carbon footprint resulting from designing, developing, deploying and running software in Clouds, while maintaining other quality aspects of software to adequate and agreed levels. A cloud architecture to support energy efficiency at service construction, deployment, and operation is discussed, as well as its implementation and evaluation plans

    Height and timing of growth spurt during puberty in young people living with vertically acquired HIV in Europe and Thailand.

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    OBJECTIVE: The aim of this study was to describe growth during puberty in young people with vertically acquired HIV. DESIGN: Pooled data from 12 paediatric HIV cohorts in Europe and Thailand. METHODS: One thousand and ninety-four children initiating a nonnucleoside reverse transcriptase inhibitor or boosted protease inhibitor based regimen aged 1-10 years were included. Super Imposition by Translation And Rotation (SITAR) models described growth from age 8 years using three parameters (average height, timing and shape of the growth spurt), dependent on age and height-for-age z-score (HAZ) (WHO references) at antiretroviral therapy (ART) initiation. Multivariate regression explored characteristics associated with these three parameters. RESULTS: At ART initiation, median age and HAZ was 6.4 [interquartile range (IQR): 2.8, 9.0] years and -1.2 (IQR: -2.3 to -0.2), respectively. Median follow-up was 9.1 (IQR: 6.9, 11.4) years. In girls, older age and lower HAZ at ART initiation were independently associated with a growth spurt which occurred 0.41 (95% confidence interval 0.20-0.62) years later in children starting ART age 6 to 10 years compared with 1 to 2 years and 1.50 (1.21-1.78) years later in those starting with HAZ less than -3 compared with HAZ at least -1. Later growth spurts in girls resulted in continued height growth into later adolescence. In boys starting ART with HAZ less than -1, growth spurts were later in children starting ART in the oldest age group, but for HAZ at least -1, there was no association with age. Girls and boys who initiated ART with HAZ at least -1 maintained a similar height to the WHO reference mean. CONCLUSION: Stunting at ART initiation was associated with later growth spurts in girls. Children with HAZ at least -1 at ART initiation grew in height at the level expected in HIV negative children of a comparable age

    HTLV-1 infection in solid organ transplant donors and recipients in Spain

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    Background: HTLV-1 infection is a neglected disease, despite infecting 10–15 million people worldwide and severe illnesses develop in 10% of carriers lifelong. Acknowledging a greater risk for developing HTLV-1 associated illnesses due to immunosuppression, screening is being widely considered in the transplantation setting. Herein, we report the experience with universal HTLV testing of donors and recipients of solid organ transplants in a survey conducted in Spain. Methods: All hospitals belonging to the Spanish HTLV network were invited to participate in the study. Briefly, HTLV antibody screening was performed retrospectively in all specimens collected from solid organ donors and recipients attended since the year 2008. Results: A total of 5751 individuals were tested for HTLV antibodies at 8 sites. Donors represented 2312 (42.2%), of whom 17 (0.3%) were living kidney donors. The remaining 3439 (59.8%) were recipients. Spaniards represented nearly 80%. Overall, 9 individuals (0.16%) were initially reactive for HTLV antibodies. Six were donors and 3 were recipients. Using confirmatory tests, HTLV-1 could be confirmed in only two donors, one Spaniard and another from Colombia. Both kidneys of the Spaniard were inadvertently transplanted. Subacute myelopathy developed within 1 year in one recipient. The second recipient seroconverted for HTLV-1 but the kidney had to be removed soon due to rejection. Immunosuppression was stopped and 3 years later the patient remains in dialysis but otherwise asymptomatic. Conclusion: The rate of HTLV-1 is low but not negligible in donors/recipients of solid organ transplants in Spain. Universal HTLV screening should be recommended in all donor and recipients of solid organ transplantation in Spain. Evidence is overwhelming for very high virus transmission and increased risk along with the rapid development of subacute myelopath

    Rapid subacute myelopathy following kidney transplantation from HTLV-1 donors: role of immunosuppresors and failure of antiretrovirals

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    Two kidney transplant recipients from a single donor became infected with HTLV-1 (human T-lymphotropic virus type 1) in Spain. One developed myelopathy 8 months following surgery despite early prescription of antiretroviral therapy. The allograft was removed from the second recipient at month 8 due to rejection and immunosuppressors discontinued. To date, 3 years later, this patient remains infected but asymptomatic. HTLV-1 infection was recognized retrospectively in the donor, a native Spaniard who had sex partners from endemic regions. Our findings call for a reappraisal of screening policies on donor-recipient organ transplantation. Based on the high risk of disease development and the large flux of persons from HTLV-1 endemic regions, pre-transplant HTLV-1 testing should be mandatory in Spain

    Prognostic factors of a lower CD4/CD8 ratio in long term viral suppression HIV infected children

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    Background Combination antiretroviral therapy (cART) is associated with marked immune reconstitution. Although a long term viral suppression is achievable, not all children however, attain complete immunological recovery due to persistent immune activation. We use CD4/CD8 ratio like a marker of immune reconstitution. Methods Perinatal HIV-infected children who underwent a first-line cART, achieved viral suppression in the first year and maintained it for more than 5 years, with no viral rebound were included. Logistic models were applied to estimate the prognostic factors, clinical characteristics at cART start, of a lower CD4/CD8 ratio at the last visit. Results 146 HIV-infected children were included: 77% Caucasian, 45% male and 28% CDC C. Median age at cART initiation was 2.3 years (IQR: 0.5-6.2). 42 (30%) children received mono-dual therapy previously to cART. Time of undetectable viral load was 9.5 years (IQR: 7.8, 12.5). 33% of the children not achieved CD4/CD8 ratio >1. Univariate analysis showed an association between CD4/CD8 <1 with lower CD4 nadir and baseline CD4; older age at diagnosis and at cART initiation; and a previous exposure to mono-dual therapy. Multivariate analysis also revealed relationship between CD4/CD8 <1 and lower CD4 nadir (OR: 1.002, CI 95% 1.000-1.004) as well as previous exposure to mono-dual therapy (OR: 0.16, CI 95% 0.003-0.720). Conclusions CD4/CD8 > 1 was not achieved in 33% of the children. Lower CD4 nadir and previous exposure to suboptimal therapy, before initiating cART, are factors showing independently association with a worse immune recovery (CD4/CD8 < 1)

    Height and timing of growth spurt during puberty in young people living with vertically acquired HIV in Europe and Thailand

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    Objective: The aim of this study was to describe growth during puberty in young people with vertically acquired HIV. Design: Pooled data from 12 paediatric HIV cohorts in Europe and Thailand. Methods: One thousand and ninety-four children initiating a nonnucleoside reverse transcriptase inhibitor or boosted protease inhibitor based regimen aged 1-10 years were included. Super Imposition by Translation And Rotation (SITAR) models described growth from age 8 years using three parameters (average height, timing and shape of the growth spurt), dependent on age and height-for-age z-score (HAZ) (WHO references) at antiretroviral therapy (ART) initiation. Multivariate regression explored characteristics associated with these three parameters. Results: At ART initiation, median age and HAZ was 6.4 [interquartile range (IQR): 2.8, 9.0] years and -1.2 (IQR: -2.3 to -0.2), respectively. Median follow-up was 9.1 (IQR: 6.9, 11.4) years. In girls, older age and lower HAZ at ART initiation were independently associated with a growth spurt which occurred 0.41 (95% confidence interval 0.20-0.62) years later in children starting ART age 6 to 10 years compared with 1 to 2 years and 1.50 (1.21-1.78) years later in those starting with HAZ less than -3 compared with HAZ at least -1. Later growth spurts in girls resulted in continued height growth into later adolescence. In boys starting ART with HAZ less than -1, growth spurts were later in children starting ART in the oldest age group, but for HAZ at least -1, there was no association with age. Girls and boys who initiated ART with HAZ at least -1 maintained a similar height to the WHO reference mean. Conclusion: Stunting at ART initiation was associated with later growth spurts in girls. Children with HAZ at least -1 at ART initiation grew in height at the level expected in HIV negative children of a comparable age

    Children living with HIV in Europe: do migrants have worse treatment outcomes?

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    Malignancies among children and young people with HIV in Western and Eastern Europe and Thailand

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    A922 Sequential measurement of 1 hour creatinine clearance (1-CRCL) in critically ill patients at risk of acute kidney injury (AKI)

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