Sounding stellar cycles with Kepler - II. Ground-based observations

We have monitored 20 Sun-like stars in the Kepler field-of-view for excess flux with the FIES spectrograph on the Nordic Optical Telescope since the launch of Kepler spacecraft in 2009. These 20 stars were selected based on their asteroseismic properties to sample the parameter space (effective temperature, surface gravity, activity level etc.) around the Sun. Though the ultimate goal is to improve stellar dynamo models, we focus the present paper on the combination of space-based and ground-based observations can be used to test the age-rotation-activity relations. In this paper we describe the considerations behind the selection of these 20 Sun-like stars and present an initial asteroseismic analysis, which includes stellar age estimates. We also describe the observations from the Nordic Optical Telescope and present mean values of measured excess fluxes. These measurements are combined with estimates of the rotation periods obtained from a simple analysis of the modulation in photometric observations from Kepler caused by starspots, and asteroseismic determinations of stellar ages, to test relations between between age, rotation and activity.Comment: Accepted for publication in MNRA

Quinoa Phenotyping Methodologies: An International Consensus

Quinoa is a crop originating in the Andes but grown more widely and with the genetic potential for significant further expansion. Due to the phenotypic plasticity of quinoa, varieties need to be assessed across years and multiple locations. To improve comparability among field trials across the globe and to facilitate collaborations, components of the trials need to be kept consistent, including the type and methods of data collected. Here, an internationally open-access framework for phenotyping a wide range of quinoa features is proposed to facilitate the systematic agronomic, physiological and genetic characterization of quinoa for crop adaptation and improvement. Mature plant phenotyping is a central aspect of this paper, including detailed descriptions and the provision of phenotyping cards to facilitate consistency in data collection. High-throughput methods for multi-temporal phenotyping based on remote sensing technologies are described. Tools for higher throughput post-harvest phenotyping of seeds are presented. A guideline for approaching quinoa field trials including the collection of environmental data and designing layouts with statistical robustness is suggested. To move towards developing resources for quinoa in line with major cereal crops, a database was created. The Quinoa Germinate Platform will serve as a central repository of data for quinoa researchers globally

Insights on the Evolution of Mycoparasitism from the Genome of Clonostachys rosea

Peer reviewe

Gene family expansions and contractions are associated with host range in plant pathogens of the genus Colletotrichum

Background: Many species belonging to the genus Colletotrichum cause anthracnose disease on a wide range of plant species. In addition to their economic impact, the genus Colletotrichum is a useful model for the study of the evolution of host specificity, speciation and reproductive behaviors. Genome projects of Colletotrichum species have already opened a new era for studying the evolution of pathogenesis in fungi. Results: We sequenced and annotated the genomes of four strains in the Colletotrichum acutatum species complex (CAsc), a clade of broad host range pathogens within the genus. The four CAsc proteomes and secretomes along with those representing an additional 13 species (six Colletotrichum spp. and seven other Sordariomycetes) were classified into protein families using a variety of tools. Hierarchical clustering of gene family and functional domain assignments, and phylogenetic analyses revealed lineage specific losses of carbohydrate-active enzymes (CAZymes) and proteases encoding genes in Colletotrichum species that have narrow host range as well as duplications of these families in the CAsc. We also found a lineage specific expansion of necrosis and ethylene-inducing peptide 1 (Nep1)-like protein (NLPs) families within the CAsc. Conclusions: This study illustrates the plasticity of Colletotrichum genomes, and shows that major changes in host range are associated with relatively recent changes in gene content