A Comprehensive Survey of Deep Learning in Remote Sensing: Theories, Tools and Challenges for the Community

In recent years, deep learning (DL), a re-branding of neural networks (NNs), has risen to the top in numerous areas, namely computer vision (CV), speech recognition, natural language processing, etc. Whereas remote sensing (RS) possesses a number of unique challenges, primarily related to sensors and applications, inevitably RS draws from many of the same theories as CV; e.g., statistics, fusion, and machine learning, to name a few. This means that the RS community should be aware of, if not at the leading edge of, of advancements like DL. Herein, we provide the most comprehensive survey of state-of-the-art RS DL research. We also review recent new developments in the DL field that can be used in DL for RS. Namely, we focus on theories, tools and challenges for the RS community. Specifically, we focus on unsolved challenges and opportunities as it relates to (i) inadequate data sets, (ii) human-understandable solutions for modelling physical phenomena, (iii) Big Data, (iv) non-traditional heterogeneous data sources, (v) DL architectures and learning algorithms for spectral, spatial and temporal data, (vi) transfer learning, (vii) an improved theoretical understanding of DL systems, (viii) high barriers to entry, and (ix) training and optimizing the DL.Comment: 64 pages, 411 references. To appear in Journal of Applied Remote Sensin

Hyperspectral Image Unmixing Incorporating Adjacency Information

While the spectral information contained in hyperspectral images is rich, the spatial resolution of such images is in many cases very low. Many pixel spectra are mixtures of pure materials’ spectra and therefore need to be decomposed into their constituents. This work investigates new decomposition methods taking into account spectral, spatial and global 3D adjacency information. This allows for faster and more accurate decomposition results

Sparse representation based hyperspectral image compression and classification

Abstract This thesis presents a research work on applying sparse representation to lossy hyperspectral image compression and hyperspectral image classification. The proposed lossy hyperspectral image compression framework introduces two types of dictionaries distinguished by the terms sparse representation spectral dictionary (SRSD) and multi-scale spectral dictionary (MSSD), respectively. The former is learnt in the spectral domain to exploit the spectral correlations, and the latter in wavelet multi-scale spectral domain to exploit both spatial and spectral correlations in hyperspectral images. To alleviate the computational demand of dictionary learning, either a base dictionary trained offline or an update of the base dictionary is employed in the compression framework. The proposed compression method is evaluated in terms of different objective metrics, and compared to selected state-of-the-art hyperspectral image compression schemes, including JPEG 2000. The numerical results demonstrate the effectiveness and competitiveness of both SRSD and MSSD approaches. For the proposed hyperspectral image classification method, we utilize the sparse coefficients for training support vector machine (SVM) and k-nearest neighbour (kNN) classifiers. In particular, the discriminative character of the sparse coefficients is enhanced by incorporating contextual information using local mean filters. The classification performance is evaluated and compared to a number of similar or representative methods. The results show that our approach could outperform other approaches based on SVM or sparse representation. This thesis makes the following contributions. It provides a relatively thorough investigation of applying sparse representation to lossy hyperspectral image compression. Specifically, it reveals the effectiveness of sparse representation for the exploitation of spectral correlations in hyperspectral images. In addition, we have shown that the discriminative character of sparse coefficients can lead to superior performance in hyperspectral image classification.EM201

Sub-pixel change detection for urban land-cover analysis via multi-temporal remote sensing images

Conventional change detection approaches are mainly based on per-pixel processing, which ignore the sub-pixel spectral variation resulted from spectral mixture. Especially for medium-resolution remote sensing images used in urban land-cover change monitoring, land use/cover components within a single pixel are usually complicated and heterogeneous due to the limitation of the spatial resolution. Thus, traditional hard detection methods based on pure pixel assumption may lead to a high level of omission and commission errors inevitably, degrading the overall accuracy of change detection. In order to address this issue and find a possible way to exploit the spectral variation in a sub-pixel level, a novel change detection scheme is designed based on the spectral mixture analysis and decision-level fusion. Nonlinear spectral mixture model is selected for spectral unmixing, and change detection is implemented in a sub-pixel level by investigating the inner-pixel subtle changes and combining multiple compositi..

Caracterização e estudo comparativo de exsudações de hidrocarbonetos e plays petrolíferos em bacias terrestres das regiões central do Irã e sudeste do Brasil usando sensoriamento remoto espectral

Orientador: Carlos Roberto de Souza FilhoTese (doutorado) - Universidade Estadual de Campinas, Instituto de GeociênciasResumo: O objetivo desta pesquisa foi explorar as assinaturas de exsudações de hidrocarbonetos na superfície usando a tecnologia de detecção remota espectral. Isso foi alcançado primeiro, realizando uma revisão abrangente das capacidades e potenciais técnicas de detecção direta e indireta. Em seguida, a técnica foi aplicada para investigar dois locais de teste localizados no Irã e no Brasil, conhecidos por hospedar sistemas ativos de micro-exsudações e afloramentos betuminosos, respectivamente. A primeira área de estudo está localizada perto da cidade de Qom (Irã), e está inserida no campo petrolífero Alborz, enterrado sob sedimentos datados do Oligoceno da Formação Upper Red. O segundo local está localizado perto da cidade de Anhembi (SP), na margem oriental da bacia do Paraná, no Brasil, e inclui acumulações de betume em arenitos triássicos da Formação Pirambóia. O trabalho na área de Qom integrou evidências de (i) estudos petrográficos e geoquímicos em laboratório, (ii) investigações de afloramentos em campo, e (iii) mapeamento de anomalia em larga escala através de conjuntos de dados multi-espectrais ASTER e Sentinel-2. O resultado deste estudo se trata de novos indicadores mineralógicos e geoquímicos para a exploração de micro-exsudações e um modelo de micro-exsudações atualizado. Durante este trabalho, conseguimos desenvolver novas metodologias para análise de dados espectroscópicos. Através da utilização de dados simulados, indicamos que o instrumento de satélite WorldView-3 tem potencial para detecção direta de hidrocarbonetos. Na sequência do estudo, dados reais sobre afloramentos de arenitos e óleo na área de Anhembi foram investigados. A área foi fotografada novamente no chão e usando o sistema de imagem hiperespectral AisaFENIX. Seguiu-se estudos e amostragem no campo,incluindo espectroscopia de alcance fechado das amostras no laboratório usando instrumentos de imagem (ou seja, sisuCHEMA) e não-imagem (ou seja, FieldSpec-4). O estudo demonstrou que uma abordagem espectroscópica multi-escala poderia fornecer uma imagem completa das variações no conteúdo e composição do betume e minerais de alteração que acompanham. A assinatura de hidrocarbonetos, especialmente a centrada em 2300 nm, mostrou-se consistente e comparável entre as escalas e capaz de estimar o teor de betume de areias de petróleo em todas as escalas de imagemAbstract: The objective of this research was to explore for the signatures of seeping hydrocarbons on the surface using spectral remote sensing technology. It was achieved firstly by conducting a comprehensive review of the capacities and potentials of the technique for direct and indirect seepage detection. Next, the technique was applied to investigate two distinctive test sites located in Iran and Brazil known to retain active microseepage systems and bituminous outcrops, respectively. The first study area is located near the city of Qom in Iran, and consists of Alborz oilfield buried under Oligocene sediments of the Upper-Red Formation. The second site is located near the town of Anhembi on the eastern edge of the Paraná Basin in Brazil and includes bitumen accumulations in the Triassic sandstones of the Pirambóia Formation. Our work in Qom area integrated evidence from (i) petrographic, spectroscopic, and geochemical studies in the laboratory, (ii) outcrop investigations in the field, and (iii) broad-scale anomaly mapping via orbital remote sensing data. The outcomes of this study was novel mineralogical and geochemical indicators for microseepage characterization and a classification scheme for the microseepage-induced alterations. Our study indicated that active microseepage systems occur in large parts of the lithofacies in Qom area, implying that the extent of the petroleum reservoir is much larger than previously thought. During this work, we also developed new methodologies for spectroscopic data analysis and processing. On the other side, by using simulated data, we indicated that WorldView-3 satellite instrument has the potential for direct hydrocarbon detection. Following this demonstration, real datasets were acquired over oil-sand outcrops of the Anhembi area. The area was further imaged on the ground and from the air by using an AisaFENIX hyperspectral imaging system. This was followed by outcrop studies and sampling in the field and close-range spectroscopy in the laboratory using both imaging (i.e. sisuCHEMA) and nonimaging instruments. The study demonstrated that a multi-scale spectroscopic approach could provide a complete picture of the variations in the content and composition of bitumen and associated alteration mineralogy. The oil signature, especially the one centered at 2300 nm, was shown to be consistent and comparable among scales, and capable of estimating the bitumen content of oil-sands at all imaging scalesDoutoradoGeologia e Recursos NaturaisDoutor em Geociências2015/06663-7FAPES

Robust hyperspectral image reconstruction for scene simulation applications

This thesis presents the development of a spectral reconstruction method for multispectral (MSI) and hyperspectral (HSI) applications through an enhanced dictionary learning and spectral unmixing methodologies. Earth observation/surveillance is largely undertaken by MSI sensing such as that given by the Landsat, WorldView, Sentinel etc, however, the practical usefulness of the MSI data set is very limited. This is mainly because of the very limited number of wave bands that can be provided by the MSI imagery. One means to remedy this major shortcoming is to extend the MSI into HSI without the need of involving expensive hardware investment. Specifically, spectral reconstruction has been one of the most critical elements in applications such as Hyperspectral scene simulation. Hyperspectral scene simulation has been an important technique particularly for defence applications. Scene simulation creates a virtual scene such that modelling of the materials in the scene can be tailored freely to allow certain parameters of the model to be studied. In the defence sector this is the most cost-effective technique to allow the vulnerability of the soldiers/vehicles to be evaluated before they are deployed to a foreign ground. The simulation of a hyperspectral scene requires the details of materials in the scene, which is normally not available. Current state-of-the-art technology is trying to make use of the MSI satellite data, and to transform it into HSI for the hyperspectral scene simulation. One way to achieve this is through a reconstruction algorithm, commonly known as spectral reconstruction, which turns the MSI into HSI using an optimisation approach. The methodology that has been adopted in this thesis is the development of a robust dictionary learning to estimate the endmember (EM) robustly. Once the EM is found the abundance of materials in the scene can be subsequently estimated through a linear unmixing approach. Conventional approaches to the material allocation of most Hyperspectral scene simulator has been using the Texture Material Mapper (TMM) algorithm, which allocates materials from a spectral library (a collection of pre-compiled endmember iii iv materials) database according to the minimum spectral Euclidean distance difference to a candidate pixel of the scene. This approach has been shown (in this work) to be highly inaccurate with large scene reconstruction error. This research attempts to use a dictionary learning technique for material allocation, solving it as an optimisation problem with the objective of: (i) to reconstruct the scene as closely as possible to the ground truth with a fraction of error as that given by the TMM method, and (ii) to learn materials which are trace (2-3 times the number of species (i.e. intrinsic dimension) in the scene) cluster to ensure all material species in the scene is included for the scene reconstruction. Furthermore, two approaches complementing the goals of the learned dictionary through a rapid orthogonal matching pursuit (r-OMP) which enhances the performance of the orthogonal matching pursuit algorithm; and secondly a semi-blind approximation of the irradiance of all pixels in the scene including those in the shaded regions, have been proposed in this work. The main result of this research is the demonstration of the effectiveness of the proposed algorithms using real data set. The SCD-SOMP has been shown capable to learn both the background and trace materials even for a dictionary with small number of atoms (≈10). Also, the KMSCD method is found to be the more versatile with overcomplete (non-orthogonal) dictionary capable to learn trace materials with high scene reconstruction accuracy (2x of accuracy enhancement over that simulated using the TMM method. Although this work has achieved an incremental improvement in spectral reconstruction, however, the need of dictionary training using hyperspectral data set in this thesis has been identified as one limitation which is needed to be removed for the future direction of research

Méthodes de séparation aveugle de sources et application à la télédétection spatiale

Cette thèse concerne la séparation aveugle de sources, qui consiste à estimer un ensemble de signaux sources inconnus à partir d'un ensemble de signaux observés qui sont des mélanges à paramètres inconnus de ces signaux sources. C'est dans ce cadre que le travail de recherche de cette thèse concerne le développement et l'utilisation de méthodes linéaires innovantes de séparation de sources pour des applications en imagerie de télédétection spatiale. Des méthodes de séparation de sources sont utilisées pour prétraiter une image multispectrale en vue d'une classification supervisée de ses pixels. Deux nouvelles méthodes hybrides non-supervisées, baptisées 2D-Corr-NLS et 2D-Corr-NMF, sont proposées pour l'extraction de cartes d'abondances à partir d'une image multispectrale contenant des pixels purs. Ces deux méthodes combinent l'analyse en composantes parcimonieuses, le clustering et les méthodes basées sur les contraintes de non-négativité. Une nouvelle méthode non-supervisée, baptisée 2D-VM, est proposée pour l'extraction de spectres à partir d'une image hyperspectrale contenant des pixels purs. Cette méthode est basée sur l'analyse en composantes parcimonieuses. Enfin, une nouvelle méthode est proposée pour l'extraction de spectres à partir d'une image hyperspectrale ne contenant pas de pixels purs, combinée avec une image multispectrale, de très haute résolution spatiale, contenant des pixels purs. Cette méthode est fondée sur la factorisation en matrices non-négatives couplée avec les moindres carrés non-négatifs. Comparées à des méthodes de la littérature, d'excellents résultats sont obtenus par les approches méthodologiques proposées.This thesis concerns the blind source separation problem, which consists in estimating a set of unknown source signals from a set of observed signals which are mixtures of these source signals, with unknown mixing coefficients. In this thesis, we develop and use innovative linear source separation methods for applications in remote sensing imagery. Source separation methods are used and applied in order to preprocess a multispectral image for a supervised classification of this image. Two new unsupervised methods, called 2D-Corr-NLS and 2D-Corr-NMF, are proposed in order to extract abundance maps from a multispectral image with pure pixels. These methods are based on sparse component analysis, clustering and non-negativity constraints. A new unsupervised method, called 2D-VM, is proposed in order to extract endmember spectra from a hyperspectral image with pure pixels. This method is based on sparse component analysis. Also, a new method is proposed for extracting endmember spectra from a hyperspectral image without pure pixels, combined with a very high spatial resolution multispectral image with pure pixels. This method is based on non-negative matrix factorization coupled with non-negative least squares. Compared to literature methods, excellent results are obtained by the proposed methodological approaches

Imaging White Blood Cells using a Snapshot Hyper-Spectral Imaging System

Automated white blood cell (WBC) counting systems process an extracted whole blood sample and provide a cell count. A step that would not be ideal for onsite screening of individuals in triage or at a security gate. Snapshot Hyper-Spectral imaging systems are capable of capturing several spectral bands simultaneously, offering co-registered images of a target. With appropriate optics, these systems are potentially able to image blood cells in vivo as they flow through a vessel, eliminating the need for a blood draw and sample staining. Our group has evaluated the capability of a commercial Snapshot Hyper-Spectral imaging system, specifically the Arrow system from Rebellion Photonics, in differentiating between white and red blood cells on unstained and sealed blood smear slides. We evaluated the imaging capabilities of this hyperspectral camera as a platform to build an automated blood cell counting system. Hyperspectral data consisting of 25, 443x313 hyperspectral bands with ~3nm spacing were captured over the range of 419 to 494nm. Open-source hyperspectral datacube analysis tools, used primarily in Geographic Information Systems (GIS) applications, indicate that white blood cells\u27 features are most prominent in the 428-442nm band for blood samples viewed under 20x and 50x magnification over a varying range of illumination intensities. The system has shown to successfully segment blood cells based on their spectral-spatial information. These images could potentially be used in subsequent automated white blood cell segmentation and counting algorithms for performing in vivo white blood cell counting

Image Restoration for Remote Sensing: Overview and Toolbox

Remote sensing provides valuable information about objects or areas from a distance in either active (e.g., RADAR and LiDAR) or passive (e.g., multispectral and hyperspectral) modes. The quality of data acquired by remotely sensed imaging sensors (both active and passive) is often degraded by a variety of noise types and artifacts. Image restoration, which is a vibrant field of research in the remote sensing community, is the task of recovering the true unknown image from the degraded observed image. Each imaging sensor induces unique noise types and artifacts into the observed image. This fact has led to the expansion of restoration techniques in different paths according to each sensor type. This review paper brings together the advances of image restoration techniques with particular focuses on synthetic aperture radar and hyperspectral images as the most active sub-fields of image restoration in the remote sensing community. We, therefore, provide a comprehensive, discipline-specific starting point for researchers at different levels (i.e., students, researchers, and senior researchers) willing to investigate the vibrant topic of data restoration by supplying sufficient detail and references. Additionally, this review paper accompanies a toolbox to provide a platform to encourage interested students and researchers in the field to further explore the restoration techniques and fast-forward the community. The toolboxes are provided in https://github.com/ImageRestorationToolbox.Comment: This paper is under review in GRS