Biochemical and genetic analyses of integrase-interacting proteins lens epithelium-derived growth factor (LEDGF)/p75 and hepatoma-derived growth factor related protein 2 (HRP2) in preintegration complex function and HIV-1 replication

AbstractHuman immunodeficiency virus type 1 (HIV-1) integrase (IN) functions in cells within the context of high molecular weight preintegration complexes (PICs). Lens epithelium-derived growth factor (LEDGF) transcriptional coactivator/p75 and hepatoma-derived growth factor related protein 2 (HRP2) tightly bind to HIV-1 IN and stimulate its integration activity in vitro. Here, we show that each recombinant host cell factor efficiently reconstitutes the in vitro activity of HIV-1 PICs disrupted for functional integration by pre-treatment with high concentrations of salt. Mutational analysis reveals that both the IN-binding and DNA-binding activities of LEDGF/p75 contribute to functional PIC reconstitution. We also investigate a role(s) for these proteins in HIV-1 infection by using short-interfering RNA. HIV-1 infection was essentially unaffected in HeLa-P4 cells depleted for LEDGF/p75, HRP2, or both proteins. We conclude that cells knocked-out for LEDGF/p75 and/or HRP2 will be useful genetic tools to address the roles of these host cell factors in HIV-1 replication

The peptidoglycan recognition proteins PGRPLA and PGRPLB regulate Anopheles immunity to bacteria and affect infection by Plasmodium

Peptidoglycan recognition proteins (PGRPs) form a family of immune regulators that is conserved from insects to mammals. In the malaria vector mosquito Anopheles coluzzii , the peptidoglycan receptor PGRPLC activates the Imd pathway limiting both t he microbiota load and Plasmodium infection. Here, we carried out an RNAi screen to examine the rol e of all seven Anopheles PGRPs in infections with Plasmodium berghei and Plasmodium falciparum . We show that, in addition to PGRPLC, PGRPLA and PGRPS2/S3 also participate in antiparas itic defenses, and that PGRPLB promotes mosquito permissiveness to P. falciparum . We also demonstrate that following a mosquito blood feeding, which promotes growth of the gut microbiota, PGRPLA and PGRPLB positively and negatively regulate the activation of the Imd pathway, respective ly. Our data demonstrate that PGRPs are important regulators of the mosquito epithelial immunity and vector comp etence

Genes encoding multiple forms of phospholipase A(2) are expressed in immature forms of human leukemic blasts.

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LEDGF/p75 interacts with divergent lentiviral integrases and modulates their enzymatic activity in vitro

Transcriptional co-activator LEDGF/p75 is the major cellular interactor of HIV-1 integrase (IN), critical to efficient viral replication. In this work, a series of INs from the Betaretrovirus, Gammaretrovirus, Deltaretrovirus, Spumavirus and Lentivirus retroviral genera were tested for interaction with the host factor. None of the non-lentiviral INs possessed detectable affinity for LEDGF in either pull-down or yeast two-hybrid assays. In contrast, all lentiviral INs examined, including those from bovine immunodeficiency virus (BIV), maedi-visna virus (MVV) and equine infectious anemia virus (EIAV) readily interacted with LEDGF. Mutation of Asp-366 to Asn in LEDGF ablated the interaction, suggesting a common mechanism of the host factor recognition by the INs. LEDGF potently stimulated strand transfer activity of divergent lentiviral INs in vitro. Unprecedentedly, in the presence of the host factor, EIAV IN almost exclusively catalyzed concerted integration, whereas HIV-1 IN promoted predominantly half-site integration, and BIV IN was equally active in both types of strand transfer. Concerted BIV and EIAV integration resulted in 5 bp duplications of the target DNA sequences. These results confirm that the interaction with LEDGF is conserved within and limited to Lentivirus and strongly argue that the host factor is intimately involved in the catalysis of lentiviral DNA integration

Plant quality and local adaptation undermine relocation in a bog specialist butterfly

The butterfly Boloria aquilonaris is a specialist of oligotrophic ecosystems. Population viability analysis predicted the species to be stable in Belgium and to collapse in the Netherlands with reduced host plant quality expected to drive species decline in the latter. We tested this hypothesis by rearing B. aquilonaris caterpillars from Belgian and Dutch sites on host plants (the cranberry, Vaccinium oxycoccos). Dutch plant quality was lower than Belgian one conferring lower caterpillar growth rate and survival. Reintroduction and/or supplementation may be necessary to ensure the viability of the species in the Netherlands, but some traits may have been selected solely in Dutch caterpillars to cope with gradual changes in host plant quality. To test this hypothesis, the performance of Belgian and Dutch caterpillars fed with plants from both countries were compared. Dutch caterpillars performed well on both plant qualities, whereas Belgian caterpillars could not switch to lower quality plants. This can be considered as an environmentally induced plastic response of caterpillars and/or a local adaptation to plant quality, which precludes the use of Belgian individuals as a unique solution for strengthening Dutch populations. More generally, these results stress that the relevance of local adaptation in selecting source populations for relocation may be as important as restoring habitat quality

Suitability and Transferability of the Resource-Based Habitat Concept: A Test With an Assemblage of Butterflies

A functional definition of the habitat-concept based on ecological resources incorporates three interconnected parameters: composition, configuration, and availability of the resources. The intersection of those parameters represents the functional habitat of a given population or species. Resource composition refers to the co-occurrence of the resources required by each individual to complete its life cycle. Resource configuration refers both to the way individual resources are spatially distributed within the habitat and the way all the resources are organized in the habitat space. Resource availability refers to the accessibility and procureability of resources. Variation in these variables is predicted to influence the demography of the population. To test the suitability of this definition and its transferability across landscapes, we first conducted a very detailed study on habitat and resource use of five butterfly species within a large nature reserve. Second, we conducted a larger-scale study, focusing on metapopulations of two species. We monitored demography for each species and tested whether its variation can be explained by (1) the vegetation type, (2) the vegetation composition or (3) the availability and configuration of the species-specific ecological resources. To confirm that resource availability and configuration reflect habitat quality, we also assessed their impacts on individual morphology. Whatever the investigated spatial scale, our results quantitatively demonstrate the overall better performance of the resource-based habitat approach compared to other most commonly used approaches. Our analysis allowed us to assess the relative importance of each ecological resource in terms of both their availability and organization relative to the species' abundance, demography and individual fitness measures. Resource availability did not play the predominant role in defining habitat quality as it was in most cases overruled by resource organization. Finally, we confirmed the between-population transferability of the habitat definition and quality estimates while adopting a resource-based habitat approach. Our study clearly demonstrates the suitability of the resource-based definition of the habitat. Therefore, we argue that this approach should be favored for species of conservation concern. Although most conclusions so far have emerged from butterfly studies, the resource-based definition of the habitat should also be ecologically relevant to many other organisms

Association of Serum Ferritin Levels Before Start of Conditioning With Mortality After alloSCT - A Prospective, Non-interventional Study of the EBMT Transplant Complications Working Party

Elevated serum ferritin levels occur due to iron overload or during inflammation and macrophage activation. A correlation of high serum ferritin levels with increased mortality after alloSCT has been suggested by several retrospective analyses as well as by two smaller prospective studies. This prospective multicentric study aimed to study the association of ferritin serum levels before start of conditioning with alloSCT outcome. Patients with acute leukemia, lymphoma or MDS receiving a matched sibling alloSCT for the first time were considered for inclusion, regardless of conditioning. A comparison of outcomes between patients with high and low ferritin level was performed using univariate analysis and multivariate analysis using cause-specific Cox model. Twenty centers reported data on 298 alloSCT recipients. The ferritin cut off point was determined at 1500 mu g/l (median of measured ferritin levels). In alloSCT recipients with ferritin levels above cut off measured before the start of conditioning, overall survival (HR = 2.5, CI = 1.5-4.1, p = 0.0005) and progression-free survival (HR = 2.4, CI = 1.6-3.8, p <0.0001) were inferior. Excess mortality in the high ferritin group was due to both higher relapse incidence (HR = 2.2, CI = 1.2-3.8, p = 0.007) and increased non-relapse mortality (NRM) (HR = 3.1, CI = 1.5-6.4, p = 0.002). NRM was driven by significantly higher infection-related mortality in the high ferritin group (HR = 3.9, CI = 1.6-9.7, p = 0.003). Acute and chronic GVHD incidence or severity were not associated to serum ferritin levels. We conclude that ferritin levels can serve as routine laboratory biomarker for mortality risk assessment before alloSCT.Peer reviewe