Mocarts: a lightweight radiation transport simulator for easy handling of complex sensing geometries

In functional neuroimaging (fNIRS), elaborated sensing geometries pairing multiple light sources and detectors arranged over the tissue surface are needed. A variety of software tools for probing forward models of radiation transport in tissue exist, but their handling of sensing geometries and specification of complex tissue architectures is, most times, cumbersome. In this work, we introduce a lightweight simulator, Monte Carlo Radiation Transport Simulator (MOCARTS) that attends these demands for simplifying specification of tissue architectures and complex sensing geometries. An object-oriented architecture facilitates such goal. The simulator core is evolved from the Monte Carlo Multi-Layer (mcml) tool but extended to support multi-channel simulations. Verification against mcml yields negligible error (RMSE~4-10e-9) over a photon trajectory. Full simulations show concurrent validity of the proposed tool. Finally, the ability of the new software to simulate multi-channel sensing geometries and to define biological tissue models in an intuitive nested-hierarchy way are exemplified

Integration and comparison of different genomic data for outcome prediction in cancer

Clinical data per cancer type. (XLSX 9 kb

Influence of Laser Modulation Frequency on the Performance of Terahertz Photoconductive Switches on Semi-Insulating GaAs Exhibiting Negative Differential Conductance

[EN]In typical terahertz time-domain spectroscopy systems, the use of the lock-in technique is necessary because of the low current induced at the receiver so that the laser pump beam must be modulated (chopped) at a frequency much lower than the laser repetition rate. This work shows that, in the case of semi-insulating GaAs (SI-GaAs) antennas, this modulation has an important effect on the antenna current and consequently, on the radiated electromagnetic pulse. There exists a threshold bias (whose value depends on the chopping frequency) where an abrupt increase in the current and consequently, in the terahertz emission takes place. The calculated energy of the pulse below and above the threshold shows that the energy doubles. The exact bias voltage at which this occurs changes with the laser modulation frequency when this is below 350 Hz, but at higher frequencies, the threshold remains almost constant. The experiments show that the responsibility for this behavior is the S-shape negative differential conductance exhibited by SI-GaAs originated by a slow field-enhanced charge trapping mechanism, which is also an important source of noise at the receiver of the system.SpanishMINECO and FEDER under Project TEC2017-83910-R and in Junta de Castilla y León and FEDER under Project SA254P1

Dual wavelength continuous wave laser using a birefringent filter

We report simultaneous dual wavelength continuous laser emission with minimum cavity elements. Tunable dual wavelength emission between 805 nm and 840 nm was observed with controlled peak separation around two nanometers, which corresponds to approximately one terahertz. Dual wavelength laser operation is possible using a novel intracavity two plate birefringent filtering element

Population structure of island-associated dolphins: evidence from photo-identification of common bottlenose dolphins (Tursiops truncatus) in the main Hawaiian Islands

Management agencies often use geopolitical boundaries as proxies for biological boundaries. In Hawaiian waters a single stock is recognized of common bottlenose dolphins, Tursiops truncatus, a species that is found both in open water and near-shore among the main Hawaiian Islands. To assess population structure, we photo-identified 336 distinctive individuals from the main Hawaiian Islands, from 2000 to 2006. Their generally shallow-water distribution, and numerous within-year and between-year resightings within island areas suggest that individuals are resident to the islands, rather than part of an offshore population moving through the area. Comparisons of identifications obtained from Kaua‘i/Ni‘ihau, O‘ahu, the “4-island area,” and the island of Hawai‘i showed no evidence of movements among these island groups, although movements from Kaua‘i to Ni‘ihau and among the “4-islands” were documented. A Bayesian analysis examining the probability of missing movements among island groups, given our sample sizes for different areas, indicates that interisland movement rates are less than 1% per year with 95% probability. Our results suggest the existence of multiple demographically independent populations of island-associated common bottlenose dolphins around the main Hawaiian islands

Multistep Parametric Processes in Nonlinear Optics

We present a comprehensive overview of different types of parametric interactions in nonlinear optics which are associated with simultaneous phase-matching of several optical processes in quadratic nonlinear media, the so-called multistep parametric interactions. We discuss a number of possibilities of double and multiple phase-matching in engineered structures with the sign-varying second-order nonlinear susceptibility, including (i) uniform and non-uniform quasi-phase-matched (QPM) periodic optical superlattices, (ii) phase-reversed and periodically chirped QPM structures, and (iii) uniform QPM structures in non-collinear geometry, including recently fabricated two-dimensional nonlinear quadratic photonic crystals. We also summarize the most important experimental results on the multi-frequency generation due to multistep parametric processes, and overview the physics and basic properties of multi-color optical parametric solitons generated by these parametric interactions.Comment: To be published in Progress in Optic