138 research outputs found
Bioassay-guided fractionation leads to the detection of cholic acid generated by the rare thalassomonas sp.
Bacterial symbionts of marine invertebrates are rich sources of novel, pharmaceutically
relevant natural products that could become leads in combatting multidrug-resistant pathogens
and treating disease. In this study, the bioactive potential of the marine invertebrate symbiont
Thalassomonas actiniarum was investigated. Bioactivity screening of the strain revealed Gram-positive
specific antibacterial activity as well as cytotoxic activity against a human melanoma cell line (A2058).
The dereplication of the active fraction using HPLC-MS led to the isolation and structural elucidation
of cholic acid and 3-oxo cholic acid. T. actiniarum is one of three type species belonging to the genus
Thalassomonas. The ability to generate cholic acid was assessed for all three species using thin-layer
chromatography and was confirmed by LC-MS. The re-sequencing of all three Thalassomonas type
species using long-read Oxford Nanopore Technology (ONT) and Illumina data produced complete
genomes, enabling the bioinformatic assessment of the ability of the strains to produce cholic acid.
Although a complete biosynthetic pathway for cholic acid synthesis in this genus could not be
determined based on sequence-based homology searches, the identification of putative penicillin or
homoserine lactone acylases in all three species suggests a mechanism for the hydrolysis of conjugated
bile acids present in the growth medium, resulting in the generation of cholic acid and 3-oxo cholic
acid. With little known currently about the bioactivities of this genus, this study serves as the
foundation for future investigations into their bioactive potential as well as the potential ecological
role of bile acid transformation, sterol modification and quorum quenching by Thalassomonas sp. in
the marine environmen
Identification of New Purpuroine Analogues from the Arctic Echinodermata Pteraster militaris That Inhibit FLT3-ITD+ AML Cell Lines
Isolation of bioactive products from the marine environment is considered a very promising
approach to identify new compounds that can be used for further drug development. In this work
we have isolated three new compounds from the purpuroine family by mass-guided preparative
HPLC; purpuroine K-M. These compounds where screened for antibacterial- and antifungal activity,
antibiofilm formation and anti-cell proliferation activity. Additionally, apoptosis-, cell cycle-, kinase
binding- and docking studies were performed to evaluate the mechanism-of-action. None of the
compounds showed activity in antibacterial-, antibiofilm- or antifungal assays. However, one of the
isolated compounds, purpuroine K, showed activity against two cell lines, MV-4-11 and MOLM-13,
two AML cell lines both carrying the FTL3-ITD mutation. In MV-4-11 cells, purpuroine K was found
to increase apoptosis and arrest cells cycle in G1/G0, which is a common feature of FLT3 inhibitors.
Interactions between purpuroine K and the FLT3 wild type or FLT3 ITD mutant proteins could
however not be elucidated in our kinase binding and docking studies. In conclusion, we have isolated
three novel molecules, purpuroine K-M, one of which (purpuroine K) shows a potent activity against
FLT3-ITD mutated AML cell lines, however, the molecular target(s) of purpuroine K still need to be
further investigated
Four new suomilides isolated from the cyanobacterium Nostoc sp. KVJ20 and proposal of their biosynthetic origin
The suomilide and the banyasides are highly modified and functionalized non-ribosomal peptides produced by cyanobacteria of the order Nostocales. These compound classes share several substructures, including a complex azabicyclononane core, which was previously assumed to be derived from the amino acid tyrosine. In our study we were able to isolate and determine the structures of four suomilides, named suomilide B â E (1â4). The compounds differ from the previously isolated suomilide A by the functionalization of the glycosyl group. Compounds 1â4 were assayed for anti-proliferative, anti-biofilm and anti-bacterial activities, but no significant activity was detected. The sequenced genome of the producer organism Nostoc sp. KVJ20 enabled us to propose a biosynthetic gene cluster for suomilides. Our findings indicated that the azabicyclononane core of the suomilides is derived from prephenate and is most likely incorporated by a proline specific non-ribosomal peptide synthetase-unit
Investigation of two Fermi-LAT gamma-ray blazars coincident with high-energy neutrinos detected by IceCube
After the identification of the gamma-ray blazar TXS 0506+056 as the first
compelling IceCube neutrino source candidate, we perform a systematic analysis
of all high-energy neutrino events satisfying the IceCube realtime trigger
criteria. We find one additional known gamma-ray source, the blazar GB6
J1040+0617, in spatial coincidence with a neutrino in this sample. The chance
probability of this coincidence is 30% after trial correction. For the first
time, we present a systematic study of the gamma-ray flux, spectral and optical
variability, and multi-wavelength behavior of GB6 J1040+0617 and compare it to
TXS 0506+056. We find that TXS 0506+056 shows strong flux variability in the
Fermi-LAT gamma-ray band, being in an active state around the arrival of
IceCube-170922A, but in a low state during the archival IceCube neutrino flare
in 2014/15. In both cases the spectral shape is statistically compatible () with the average spectrum showing no indication of a significant
relative increase of a high-energy component. While the association of GB6
J1040+0617 with the neutrino is consistent with background expectations, the
source appears to be a plausible neutrino source candidate based on its
energetics and multi-wavelength features, namely a bright optical flare and
modestly increased gamma-ray activity. Finding one or two neutrinos originating
from gamma-ray blazars in the given sample of high-energy neutrinos is
consistent with previously derived limits of neutrino emission from gamma-ray
blazars, indicating the sources of the majority of cosmic high-energy neutrinos
remain unknown.Comment: 22 pages, 11 figures, 2 Table
Paper Trails: Following the Money
In many recent elections, the candidates who raise the most money have a better shot at winning, so candidates must raise millions of dollars to win an election. A top question to consider in all elections: Where is the money coming from?
Posting about the financing behind federal elections from In All Things - an online hub committed to the claim that the life, death, and resurrection of Jesus Christ has implications for the entire world.
http://inallthings.org/paper-trails-following-the-money
Searching for eV-scale sterile neutrinos with eight years of atmospheric neutrinos at the IceCube neutrino telescope
We report in detail on searches for eV-scale sterile neutrinos, in the
context of a 3+1 model, using eight years of data from the IceCube neutrino
telescope. By analyzing the reconstructed energies and zenith angles of 305,735
atmospheric and events we construct confidence
intervals in two analysis spaces: vs.
under the conservative assumption ; and
vs. given sufficiently large that
fast oscillation features are unresolvable. Detailed discussions of the event
selection, systematic uncertainties, and fitting procedures are presented. No
strong evidence for sterile neutrinos is found, and the best-fit likelihood is
consistent with the no sterile neutrino hypothesis with a p-value of 8\% in the
first analysis space and 19\% in the second.Comment: This long-form paper is a companion to the letter "An eV-scale
sterile neutrino search using eight years of atmospheric muon neutrino data
from the IceCube Neutrino Observatory". v2: update other experiments contours
on results plo
An eV-scale sterile neutrino search using eight years of atmospheric muon neutrino data from the IceCube Neutrino Observatory
The results of a 3+1 sterile neutrino search using eight years of data from
the IceCube Neutrino Observatory are presented. A total of 305,735 muon
neutrino events are analyzed in reconstructed energy-zenith space to test for
signatures of a matter-enhanced oscillation that would occur given a sterile
neutrino state with a mass-squared differences between 0.01\,eV and
100\,eV. The best-fit point is found to be at
and , which is consistent with the no sterile
neutrino hypothesis with a p-value of 8.0\%.Comment: 11 pages, 5 figures. This letter is supported by the long-form paper
"Searching for eV-scale sterile neutrinos with eight years of atmospheric
neutrinos at the IceCube neutrino telescope," also appearing on arXiv.
Digital data release available at:
https://github.com/icecube/HE-Sterile-8year-data-releas
Measurement of the high-energy all-flavor neutrino-nucleon cross section with IceCube
The flux of high-energy neutrinos passing through the Earth is attenuated due to their interactions with matter. The interaction rate is determined by the neutrino interaction cross section and affects the flux arriving at the IceCube Neutrino Observatory, a cubic-kilometer neutrino detector embedded in the Antarctic ice sheet. We present a measurement of the neutrino cross section between 60 TeV and 10 PeV using the high-energy starting event (HESE) sample from IceCube with 7.5 years of data. The result is binned in neutrino energy and obtained using both Bayesian and frequentist statistics. We find it compatible with predictions from the Standard Model. While the cross section is expected to be flavor independent above 1 TeV, additional constraints on the measurement are included through updated experimental particle identification (PID) classifiers, proxies for the three neutrino flavors. This is the first such measurement to use a ternary PID observable and the first to account for neutrinos from tau decay
LeptonInjector and LeptonWeighter: A neutrino event generator and weighter for neutrino observatories
We present a high-energy neutrino event generator, called LeptonInjector,
alongside an event weighter, called LeptonWeighter. Both are designed for
large-volume Cherenkov neutrino telescopes such as IceCube. The neutrino event
generator allows for quick and flexible simulation of neutrino events within
and around the detector volume, and implements the leading Standard Model
neutrino interaction processes relevant for neutrino observatories:
neutrino-nucleon deep-inelastic scattering and neutrino-electron annihilation.
In this paper, we discuss the event generation algorithm, the weighting
algorithm, and the main functions of the publicly available code, with
examples.Comment: 28 pages, 10 figures, 3 table
Joint Constraints on Galactic Diffuse Neutrino Emission from the ANTARES and IceCube Neutrino Telescopes
[EN] The existence of diffuse Galactic neutrino production is expected from cosmic-ray interactions with Galactic gas and radiation Âżelds. Thus, neutrinos are a unique messenger offering the opportunity to test the products of Galactic cosmic-ray interactions up to energies of hundreds of TeV. Here we present a search for this production using ten years of Astronomy with a Neutrino Telescope and Abyss environmental RESearch (ANTARES) track and shower data, as well as seven years of IceCube track data. The data are combined into a joint likelihood test for neutrino emission according to the KRAg model assuming a 5 PeV per nucleon Galactic cosmic-ray cutoff. No signiÂżcant excess is found. As a consequence, the limits presented in this Letter start constraining the model parameter space for Galactic cosmic-ray production and transport.Albert, A.; Andre, M.; Anghinolfi, M.; Ardid RamĂrez, M.; Aubert, J-.; Aublin, J.; Avgitas, T.... (2018). Joint Constraints on Galactic Diffuse Neutrino Emission from the ANTARES and IceCube Neutrino Telescopes. The Astrophysical Journal. 868(2):1-7. https://doi.org/10.3847/2041-8213/aaeecfS178682Aartsen, M. G., Ackermann, M., Adams, J., Aguilar, J. A., Ahlers, M., Ahrens, M., ⊠Anderson, T. (2017). Search for Astrophysical Sources of Neutrinos Using Cascade Events in IceCube. The Astrophysical Journal, 846(2), 136. doi:10.3847/1538-4357/aa8508Aartsen, M. G., Abraham, K., Ackermann, M., Adams, J., Aguilar, J. A., Ahlers, M., ⊠Archinger, M. (2015). A COMBINED MAXIMUM-LIKELIHOOD ANALYSIS OF THE HIGH-ENERGY ASTROPHYSICAL NEUTRINO FLUX MEASURED WITH ICECUBE. The Astrophysical Journal, 809(1), 98. doi:10.1088/0004-637x/809/1/98Aartsen, M. G., Abraham, K., Ackermann, M., Adams, J., Aguilar, J. A., Ahlers, M., ⊠Anderson, T. (2017). All-sky Search for Time-integrated Neutrino Emission from Astrophysical Sources with 7 yr of IceCube Data. The Astrophysical Journal, 835(2), 151. doi:10.3847/1538-4357/835/2/151Aartsen, M. G., Ackermann, M., Adams, J., Aguilar, J. A., Ahlers, M., Ahrens, M., ⊠Anderson, T. (2017). Constraints on Galactic Neutrino Emission with Seven Years of IceCube Data. The Astrophysical Journal, 849(1), 67. doi:10.3847/1538-4357/aa8dfbAartsen, M. G., Ackermann, M., Adams, J., Aguilar, J. A., Ahlers, M., Ahrens, M., ⊠Ansseau, I. (2017). The IceCube Neutrino Observatory: instrumentation and online systems. Journal of Instrumentation, 12(03), P03012-P03012. doi:10.1088/1748-0221/12/03/p03012Ackermann, M., Ajello, M., Atwood, W. B., Baldini, L., Ballet, J., Barbiellini, G., ⊠Berenji, B. (2012). FERMI-LAT OBSERVATIONS OF THE DIFFUSE Îł-RAY EMISSION: IMPLICATIONS FOR COSMIC RAYS AND THE INTERSTELLAR MEDIUM. The Astrophysical Journal, 750(1), 3. doi:10.1088/0004-637x/750/1/3AdriĂĄn-MartĂnez, S., Ageron, M., Aguilar, J. A., Samarai, I. A., Albert, A., AndrĂ©, M., ⊠Ardid, M. (2012). The positioning system of the ANTARES Neutrino Telescope. Journal of Instrumentation, 7(08), T08002-T08002. doi:10.1088/1748-0221/7/08/t08002Ageron, M., Aguilar, J. A., Al Samarai, I., Albert, A., Ameli, F., AndrĂ©, M., ⊠Ardid, M. (2011). ANTARES: The first undersea neutrino telescope. Nuclear Instruments and Methods in Physics Research Section A: Accelerators, Spectrometers, Detectors and Associated Equipment, 656(1), 11-38. doi:10.1016/j.nima.2011.06.103Ahn, H. S., Allison, P., Bagliesi, M. G., Beatty, J. J., Bigongiari, G., Childers, J. T., ⊠Zinn, S. Y. (2010). DISCREPANT HARDENING OBSERVED IN COSMIC-RAY ELEMENTAL SPECTRA. The Astrophysical Journal, 714(1), L89-L93. doi:10.1088/2041-8205/714/1/l89Albert, A., AndrĂ©, M., Anghinolfi, M., Anton, G., Ardid, M., Aubert, J.-J., ⊠Basa, S. (2017). New constraints on all flavor Galactic diffuse neutrino emission with the ANTARES telescope. Physical Review D, 96(6). doi:10.1103/physrevd.96.062001Antoni, T., Apel, W. D., Badea, A. F., Bekk, K., Bercuci, A., BlĂŒmer, J., ⊠Zabierowski, J. (2005). KASCADE measurements of energy spectra for elemental groups of cosmic rays: Results and open problems. Astroparticle Physics, 24(1-2), 1-25. doi:10.1016/j.astropartphys.2005.04.001Apel, W. D., Arteaga-VelĂĄzquez, J. C., Bekk, K., Bertaina, M., BlĂŒmer, J., Bozdog, H., ⊠Cossavella, F. (2013). KASCADE-Grande measurements of energy spectra for elemental groups of cosmic rays. Astroparticle Physics, 47, 54-66. doi:10.1016/j.astropartphys.2013.06.004Gaggero, D., Grasso, D., Marinelli, A., Taoso, M., & Urbano, A. (2017). Diffuse Cosmic Rays Shining in the Galactic Center: A Novel Interpretation of H.E.S.S. and Fermi-LAT
Îł
-Ray Data. Physical Review Letters, 119(3). doi:10.1103/physrevlett.119.031101Gaggero, D., Grasso, D., Marinelli, A., Urbano, A., & Valli, M. (2015). THE GAMMA-RAY AND NEUTRINO SKY: A CONSISTENT PICTURE OF
FERMI
-LAT, MILAGRO, AND ICECUBE RESULTS. The Astrophysical Journal, 815(2), L25. doi:10.1088/2041-8205/815/2/l25Gaggero, D., Urbano, A., Valli, M., & Ullio, P. (2015). Gamma-ray sky points to radial gradients in cosmic-ray transport. Physical Review D, 91(8). doi:10.1103/physrevd.91.083012Vladimirov, A. E., Digel, S. W., Jóhannesson, G., Michelson, P. F., Moskalenko, I. V., Nolan, P. L., ⊠Strong, A. W. (2011). GALPROP WebRun: An internet-based service for calculating galactic cosmic ray propagation and associated photon emissions. Computer Physics Communications, 182(5), 1156-1161. doi:10.1016/j.cpc.2011.01.01
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