Apar-T: code, validation, and physical interpretation of particle-in-cell results

We present the parallel particle-in-cell (PIC) code Apar-T and, more importantly, address the fundamental question of the relations between the PIC model, the Vlasov-Maxwell theory, and real plasmas. First, we present four validation tests: spectra from simulations of thermal plasmas, linear growth rates of the relativistic tearing instability and of the filamentation instability, and non-linear filamentation merging phase. For the filamentation instability we show that the effective growth rates measured on the total energy can differ by more than 50% from the linear cold predictions and from the fastest modes of the simulation. Second, we detail a new method for initial loading of Maxwell-J\"uttner particle distributions with relativistic bulk velocity and relativistic temperature, and explain why the traditional method with individual particle boosting fails. Third, we scrutinize the question of what description of physical plasmas is obtained by PIC models. These models rely on two building blocks: coarse-graining, i.e., grouping of the order of p~10^10 real particles into a single computer superparticle, and field storage on a grid with its subsequent finite superparticle size. We introduce the notion of coarse-graining dependent quantities, i.e., quantities depending on p. They derive from the PIC plasma parameter Lambda^{PIC}, which we show to scale as 1/p. We explore two implications. One is that PIC collision- and fluctuation-induced thermalization times are expected to scale with the number of superparticles per grid cell, and thus to be a factor p~10^10 smaller than in real plasmas. The other is that the level of electric field fluctuations scales as 1/Lambda^{PIC} ~ p. We provide a corresponding exact expression. Fourth, we compare the Vlasov-Maxwell theory, which describes a phase-space fluid with infinite Lambda, to the PIC model and its relatively small Lambda.Comment: 24 pages, 14 figures, accepted in Astronomy & Astrophysic

Algebraic Curve Fitting Support Vector Machines

An algebraic curve is defined as the zero set of a multivariate polynomial. We consider the problem of fitting an algebraic curve to a set of vectors given an additional set of vectors labelled as interior or exterior to the curve. The problem of fitting a linear curve in this way is shown to lend itself to a support vector representation, allowing non-linear curves and high dimensional surfaces to be estimated using kernel functions. The approach is attractive due to the stability of solutions obtained, the range of functional forms made ossible (including polynomials), and the potential for applying well understood regularisation operators from the theory of Support Vector Machines

Towards a Maximum Entropy Method for Estimating HMM Parameters

Training a Hidden Markov Model (HMM) to maximise the probability of a given sequence can result in over-fitting. That is, the model represents the training sequence well, but fails to generalise. In this paper, we present a possible solution to this problem, which is to maximise a linear combination of the likelihood of the training data, and the entropy of the model. We derive the necessary equations for gradient based maximisation of this combined term. The performance of the system is then evaluated in comparison with three other algorithms, on a classification task using synthetic data. The results indicate that the method is potentially useful. The main problem with the method is the computational intractability of the entropy calculation

HST Spectroscopy of Spot 1 on the Circumstellar Ring of SN 1987A

We present ultraviolet and optical spectra of the first bright spot (PA = 29 degrees) on Supernova 1987A's equatorial circumstellar ring taken with the Space Telescope Imaging Spectrograph. We interpret this spot as the emission produced by radiative shocks that occur where the supernova blast wave strikes an inward protrusion of the ring. The observed line widths and intensity ratios indicate the presence of radiative shocks with velocities ranging from 100 to 250 km s^-1 entering dense (> 10^4 cm^-3) gas. These observations, and future observations of the development of the spectra and line profiles, provide a unique opportunity to study the hydrodynamics of radiative shocks.Comment: Accepted by ApJL on Aug. 3, 200

A dusty pinwheel nebula around the massive star WR 104

Wolf-Rayet (WR) stars are luminous massive blue stars thought to be immediate precursors to the supernova terminating their brief lives. The existence of dust shells around such stars has been enigmatic since their discovery some 30 years ago; the intense radiation field from the star should be inimical to dust survival. Although dust-creation models, including those involving interacting stellar winds from a companion star, have been put forward, high-resolution observations are required to understand this phenomena. Here we present resolved images of the dust outflow around Wolf-Rayet WR 104, obtained with novel imaging techniques, revealing detail on scales corresponding to about 40 AU at the star. Our maps show that the dust forms a spatially confined stream following precisely a linear (or Archimedian) spiral trajectory. Images taken at two separate epochs show a clear rotation with a period of 220 +/- 30 days. Taken together, these findings prove that a binary star is responsible for the creation of the circumstellar dust, while the spiral plume makes WR 104 the prototype of a new class of circumstellar nebulae unique to interacting wind systems.Comment: 7 pages, 2 figures, Appearing in Nature (1999 April 08

Short-term variability in Greenland Ice Sheet motion forced by time-varying meltwater inputs: implications for the relationship between subglacial drainage system behavior and ice velocity.

High resolution measurements of ice motion along a -120 km transect in a land-terminating section of the GrIS reveal short-term velocity variations (<1 day), which are forced by rapid variations in meltwater input to the subglacial drainage system from the ice sheet surface. The seasonal changes in ice velocity at low elevations (<1000 m) are dominated by events lasting from 1 day to 1 week, although daily cycles are largely absent at higher elevations, reflecting different patterns of meltwater input. Using a simple model of subglacial conduit behavior we show that the seasonal record of ice velocity can be understood in terms of a time-varying water input to a channelized subglacial drainage system. Our investigation substantiates arguments that variability in the duration and rate, rather than absolute volume, of meltwater delivery to the subglacial drainage system are important controls on seasonal patterns of subglacial water pressure, and therefore ice velocity. We suggest that interpretations of hydro-dynamic behavior in land-terminating sections of the GrIS margin which rely on steady state drainage theories are unsuitable for making predictions about the effect of increased summer ablation on future rates of ice motion. © 2012. American Geophysical Union

Post-stroke inhibition of induced NADPH oxidase type 4 prevents oxidative stress and neurodegeneration

Ischemic stroke is the second leading cause of death worldwide. Only one moderately effective therapy exists, albeit with contraindications that exclude 90% of the patients. This medical need contrasts with a high failure rate of more than 1,000 pre-clinical drug candidates for stroke therapies. Thus, there is a need for translatable mechanisms of neuroprotection and more rigid thresholds of relevance in pre-clinical stroke models. One such candidate mechanism is oxidative stress. However, antioxidant approaches have failed in clinical trials, and the significant sources of oxidative stress in stroke are unknown. We here identify NADPH oxidase type 4 (NOX4) as a major source of oxidative stress and an effective therapeutic target in acute stroke. Upon ischemia, NOX4 was induced in human and mouse brain. Mice deficient in NOX4 (Nox4(-/-)) of either sex, but not those deficient for NOX1 or NOX2, were largely protected from oxidative stress, blood-brain-barrier leakage, and neuronal apoptosis, after both transient and permanent cerebral ischemia. This effect was independent of age, as elderly mice were equally protected. Restoration of oxidative stress reversed the stroke-protective phenotype in Nox4(-/-) mice. Application of the only validated low-molecular-weight pharmacological NADPH oxidase inhibitor, VAS2870, several hours after ischemia was as protective as deleting NOX4. The extent of neuroprotection was exceptional, resulting in significantly improved long-term neurological functions and reduced mortality. NOX4 therefore represents a major source of oxidative stress and novel class of drug target for stroke therapy

Embracing the Market: Entry into Self-Employment in Transitional China, 1978-1996

This paper introduces labor market transition as an intervening process by which the macro institutional transition to a market economy alters social stratification outcome. Rather than directly addressing income distribution, it examines the pattern of workers’ entry into self-employment in reform-era China (1978-1996), focusing on rural-urban differences and the temporal trend. Analyses of data from a national representative survey in China show that education, party membership and cadre status all deter urban workers’ entry into self-employment, while education promotes rural workers’ entry into self-employment. As marketization proceeds, the rate of entry into self-employment increases in both rural and urban China, but urban workers are increasingly more likely to take advantages of the new market opportunities. In urban China, college graduates and cadres are still less likely to be involved in self-employment, but they are becoming more likely to do so in the later phase of reform. The diversity of transition scenarios is attributed to rural-urban differences in labor market structures.http://deepblue.lib.umich.edu/bitstream/2027.42/39897/3/wp512.pd

Socio-economic impact of ecological agriculture at the territorial level

This deliverable investigates the socio-economic effects of ecological approaches to farming through implementing two participatory approaches, namely Delphi exercise and Q-method, at the level of a case study area (CSA). The focus is on how people and other productive assets are employed and remunerated by ecological approaches to agriculture, particularly those aspects that can influence employment, and drive the prosperity and vitality of local communities and some rural businesses. It is based on the collaborative research on Task 4.2 ‘Socio-economic impact of ecological agriculture at the territorial level’ of the LIFT project between UNIKENT (United Kingdom-UK) (Task Leader), BOKU (Austria), INRAE (France), VetAgro Sup (France), DEMETER (Greece), MTA KRTK (Hungary), UNIBO (Italy), IRWiR PAN (Poland), IAE-AR (Romania), SLU (Sweden), SRUC (UK). Beginning with the Delphi exercise, this deliverable presents qualitative information extracted from stakeholders in the following four steps. First, the researchers build a presentation of differences between ecological and conventional farming approaches in each CSA. Second, stakeholders elaborate on how they understand ecological farming approaches to exist in each CSA. Third, stakeholders develop a scenario of adoption of ecological approaches to farming depending on two factors: pattern (ecological farms forming clusters or randomly spread within the territory) and rate of adoption 10 years in the future. After establishing this scenario across two rounds, the stakeholders explore the socio-economic effects of their adoption scenario. The Q-methodology then presents a Q-set of statements that the Delphi has developed and, through factor analysis,studies the key stakeholder perspectives of the socio-economic effects of the perceived adoption of ecological practices in 10 years in the future. Four key results can be derived from the Delphi exercise and the Q-methodology. First, a higher adoption of ecological farming approaches, especially so at a 50% adoption rate, is mostly thought by stakeholders in the Delphi Exercise to lead to an increase in skill level and quality of life in on-farm employment. This is as a result of an increased diversity of farming enterprises on farms using ecological farming approaches, the interest generated from this, the knowledge of natural processes and biology required, engagement with nature and change in machinery that is coming into the industry. Strongly related to this need for skills is a predicted increase in the number of advisers and civil servants to deal with more complicated farms and incentives as well as monitoring of ecological effects on farm. An increase in required skill level is repeated across all Q-studies. Second, especially where farms are clustered together, Delphi Exercise respondents predict an increase in the trade of inputs such as manure and compost replacing synthetic fertiliser, as well as more sharing of capital and labour. Q-methodology highlights that these clusters may support a stronger social movement, more consumers buying local food and increase collaboration between farmers. Supply chains are expected to become shorter as farmers sell more directly and there are fewer intermediaries upstream of the farming sector. As farmers collaborate more with each other on environmental objectives, trading inputs and sharing best practices, farmer relationships should improve in rural communities. Third, Delphi exercise finds that contracting, machinery purchasers, and machinery traders and dealers could increase, decrease or display no change – the anticipated effects are mixed. Stakeholders are in no doubt that machinery use will change and therefore new skills will need to be learnt, but the wider effect on machinery purchase is uncertain. However, stakeholders conclude that a greater specialisation in machinery will occur leading to changes in farm management as well as the suppliers of this machinery. Q-methodology highlights that ecological practices will not mean the end of machinery and a lot more labour – often machinery will be useful in weeding and reducing physical labour as technology has significantly improved and skills are improving too in order to use these technologies. Fourth, Delphi respondents argued that although rural populations might be little affected by ecological farming, a shift in people moving from urban to rural settlements, and thereby a higher rural population density, seeking a more attractive rural environment, might contribute to higher local consumer demand. The Q-methodology highlights that where there is high adoption, rural areas are expected to become more attractive, as landscapes will have a much greater variety of crops instead of fields of monocrops. This variety of crops may include agroforestry (farmers interested in ecological approaches to farming may also be interested in agroforestry as a way of boosting their yields and protecting crops and livestock from the elements) as well as intercropping

Deep and bottom water export from the Southern Ocean to the Pacific Ocean over the past 38 million years

The application of radiogenic isotopes to the study of Cenozoic circulation patterns in the South Pacific Ocean has been hampered by the fact that records from only equatorial Pacific deep water have been available. We present new Pb and Nd isotope time series for two ferromanganese crusts that grew from equatorial Pacific bottom water (D137-01, “Nova,” 7219 m water depth) and southwest Pacific deep water (63KD, “Tasman,” 1700 m water depth). The crusts were dated using 10Be/9Be ratios combined with constant Co-flux dating and yield time series for the past 38 and 23 Myr, respectively. The surface Nd and Pb isotope distributions are consistent with the present-day circulation pattern, and therefore the new records are considered suitable to reconstruct Eocene through Miocene paleoceanography for the South Pacific. The isotope time series of crusts Nova and Tasman suggest that equatorial Pacific deep water and waters from the Southern Ocean supplied the dissolved trace metals to both sites over the past 38 Myr. Changes in the isotopic composition of crust Nova are interpreted to reflect development of the Antarctic Circumpolar Current and changes in Pacific deep water circulation caused by the build up of the East Antarctic Ice Sheet. The Nd isotopic composition of the shallower water site in the southwest Pacific appears to have been more sensitive to circulation changes resulting from closure of the Indonesian seaway