336 research outputs found

    Canopy uptake dominates nighttime carbonyl sulfide fluxes in a boreal forest

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    Nighttime vegetative uptake of carbonyl sulfide (COS) can exist due to the incomplete closure of stomata and the light independence of the enzyme carbonic anhydrase, which complicates the use of COS as a tracer for gross primary productivity (GPP). In this study we derived nighttime COS fluxes in a boreal forest (the SMEAR II station in Hyytiälä, Finland; 61°51′ N, 24°17′ E; 181 m a.s.l.) from June to November 2015 using two different methods: eddy-covariance (EC) measurements (FCOS-EC) and the radon-tracer method (FCOS-Rn). The total nighttime COS fluxes averaged over the whole measurement period were −6.8 ± 2.2 and −7.9 ± 3.8 pmol m−2 s−1 for FCOS-Rn and FCOS-EC, respectively, which is 33–38 % of the average daytime fluxes and 21 % of the total daily COS uptake. The correlation of 222Rn (of which the source is the soil) with COS (average R2  =  0.58) was lower than with CO2 (0.70), suggesting that the main sink of COS is not located at the ground. These observations are supported by soil chamber measurements that show that soil contributes to only 34–40 % of the total nighttime COS uptake. We found a decrease in COS uptake with decreasing nighttime stomatal conductance and increasing vapor-pressure deficit and air temperature, driven by stomatal closure in response to a warm and dry period in August. We also discuss the effect that canopy layer mixing can have on the radon-tracer method and the sensitivity of (FCOS-EC) to atmospheric turbulence. Our results suggest that the nighttime uptake of COS is mainly driven by the tree foliage and is significant in a boreal forest, such that it needs to be taken into account when using COS as a tracer for GPP

    Fine-resolution mapping of microforms of a boreal bog using aerial images and waveform-recording LiDAR

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    Boreal bogs are important stores and sinks of atmospheric carbon whose surfaces are characterised by vegetation microforms. Efficient methods for monitoring their vegetation are needed because changes in vegetation composition lead to alteration in their function such as carbon gas exchange with the atmosphere. We investigated how airborne image and waveform-recording LiDAR data can be used for 3D mapping of microforms in an open bog which is a mosaic of pools, hummocks with a few stunted pines, hollows, intermediate surfaces and mud-bottom hollows. The proposed method operates on the bog surface, which is reconstructed using LiDAR. The vegetation was classified at 20 cm resolution. We hypothesised that LiDAR data describe surface topography, moisture and the presence and depth of field-layer vegetation and surface roughness; while multiple images capture the colours and texture of the vegetation, which are influenced by directional reflectance effects. We conclude that geometric LiDAR features are efficient predictors of microforms. LiDAR intensity and echo width were specific to moisture and surface roughness, respectively. Directional reflectance constituted 4-34 % of the variance in images and its form was linked to the presence of the field layer. Microform-specific directional reflectance patterns were deemed to be of marginal value in enhancing the classification, and RGB image features were inferior to LiDAR variables. Sensor fusion is an attractive option for fine-scale mapping of these habitats. We discuss the task and propose options for improving the methodology.Peer reviewe

    Hydrocarbon fluxes above a Scots pine forest canopy: Measurements and modeling

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    International audienceWe measured the fluxes of several hydrocarbon species above a Scots pine (Pinus sylvestris) stand using disjunct eddy covariance technique with proton transfer reaction ? mass spectrometry. The measurements were conducted during four days in July at SMEAR II research station in Hyytiälä, Finland. Compounds which showed significant emission fluxes were methanol, acetaldehyde, acetone, and monoterpenes. A stochastic Lagrangian transport model with simple chemical degradation was applied to assess the sensitivity of the above canopy fluxes to chemistry. According to the model, the chemical degradation had a minor effect on the fluxes measured in this study but has a major effect on the vertical flux profiles of more reactive compounds, such as sesquiterpenes. The monoterpene fluxes followed the traditional exponential temperature dependent emission algorithm but were considerably higher than the fluxes measured before at the same site. The normalized emission potential (30°C) was 2.5 ?g gdw?1 h?1 obtained using the temperature dependence coefficient of 0.09°C?1

    Uncertainty of eddy covariance flux measurements over an urban area based on two towers

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    The eddy covariance (EC) technique is the most direct method for measuring the exchange between the surface and the atmosphere in different ecosystems. Thus, it is commonly used to get information on air pollutant and greenhouse gas emissions, and on turbulent heat transfer. Typically an ecosystem is monitored by only one single EC measurement station at a time, making the ecosystem-level flux values subject to random and systematic uncertainties. Furthermore, in urban ecosystems we often have no choice but to conduct the single-point measurements in non-ideal locations such as close to buildings and/or in the roughness sub-layer, bringing further complications to data analysis and flux estimations. In order to tackle the question of how representative a single EC measurement point in an urban area can be, two identical EC systems - measuring momentum, sensible and latent heat, and carbon dioxide fluxes - were installed on each side of the same building structure in central Helsinki, Finland, during July 2013-September 2015. The main interests were to understand the sensitivity of the vertical fluxes on the single measurement point and to estimate the systematic uncertainty in annual cumulative values due to missing data if certain, relatively wide, flow-distorted wind sectors are disregarded. The momentum and measured scalar fluxes respond very differently to the distortion caused by the building structure. The momentum flux is the most sensitive to the measurement location, whereas scalar fluxes are less impacted. The flow distortion areas of the two EC systems (40-150 and 230-340 degrees) are best detected from the mean-wind-normalised turbulent kinetic energy, and outside these areas the median relative random uncertainties of the studied fluxes measured by one system are between 12 % and 28 %. Different gap-filling methods with which to yield annual cumulative fluxes show how using data from a single EC measurement point can cause up to a 12 % (480 g C m(-2)) underestimation in the cumulative carbon fluxes as compared to combined data from the two systems. Combining the data from two EC systems also increases the fraction of usable half-hourly carbon fluxes from 45 % to 69 % at the annual level. For sensible and latent heat, the respective underestimations are up to 5 % and 8 % (0.094 and 0.069 TJ m(-2)). The obtained random and systematic uncertainties are in the same range as observed in vegetated ecosystems. We also show how the commonly used data flagging criteria in natural ecosystems, kurtosis and skewness, are not necessarily suitable for filtering out data in a densely built urban environment. The results show how the single measurement system can be used to derive representative flux values for central Helsinki, but the addition of second system to other side of the building structure decreases the systematic uncertainties. Comparable results can be expected in similarly dense city locations where no large directional deviations in the source area are seen. In general, the obtained results will aid the scientific community by providing information about the sensitivity of EC measurements and their quality flagging in urban areas.Peer reviewe

    How consistent are the transcriptome changes associated with cold acclimation in two species of the Drosophila virilis group?

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    This work was financially support by a Marie Curie Initial Training Network grant, “Understanding the evolutionary origin of biological diversity” (ITN-2008–213780 SPECIATION), grants from the Academy of Finland to A.H. (project 132619) and M.K. (projects 268214 and 272927), a grant from NERC, UK to M.G.R. (grant NE/J020818/1), and NERC, UK PhD studentship to D.J.P. (NE/I528634/1).For many organisms the ability to cold acclimate with the onset of seasonal cold has major implications for their fitness. In insects, where this ability is widespread, the physiological changes associated with increased cold tolerance have been well studied. Despite this, little work has been done to trace changes in gene expression during cold acclimation that lead to an increase in cold tolerance. We used an RNA-Seq approach to investigate this in two species of the Drosophila virilis group. We found that the majority of genes that are differentially expressed during cold acclimation differ between the two species. Despite this, the biological processes associated with the differentially expressed genes were broadly similar in the two species. These included: metabolism, cell membrane composition, and circadian rhythms, which are largely consistent with previous work on cold acclimation/cold tolerance. In addition, we also found evidence of the involvement of the rhodopsin pathway in cold acclimation, a pathway that has been recently linked to thermotaxis. Interestingly, we found no evidence of differential expression of stress genes implying that long-term cold acclimation and short-term stress response may have a different physiological basis.PostprintPeer reviewe
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