83 research outputs found
The Magmatic to Hydrothermal Evolution of the Intrusive Mont Saint-Hilaire Complex: Insights into the Late-stage Evolution of Peralkaline Rocks
The Cretaceous Mont Saint-Hilaire complex (Quebec, Canada) comprises three major rock units that were emplaced in the following sequence: (I) gabbros; (II) diorites; (III) diverse partly agpaitic foid syenites. The major element compositions of the rock-forming minerals, age-corrected Nd and oxygen isotope data for mineral separates and trace element data of Fe-Mg silicates from the various lithologies imply a common source for all units. The distribution of the rare earth elements in clinopyroxene from the gabbros indicates an ocean island basalt type composition for the parental magma. Gabbros record temperatures of 1200 to 800°C, variable silica activities between 0·7 and 0·3, and fO2 values between −0·5 and +0·7 (log ΔFMQ, where FMQ is fayalite-magnetite-quartz). The diorites crystallized under uniform aSiO2 (aSiO2 = 0·4-0·5) and more reduced fO2 conditions (log ΔFMQ ~ −1) between ~1100 and ~800°C. Phase equilibria in various foid syenites indicate that silica activities decrease from 0·6-0·3 at ~1000°C to <0·3 at ~550°C. Release of an aqueous fluid during the transition to the hydrothermal stage caused aSiO2 to drop to very low values, which results from reduced SiO2 solubilities in aqueous fluids compared with silicate melts. During the hydrothermal stage, high water activities stabilized zeolite-group minerals. Fluid inclusions record a complex post-magmatic history, which includes trapping of an aqueous fluid that unmixed from the restitic foid syenitic magma. Cogenetic aqueous and carbonic fluid inclusions reflect heterogeneous trapping of coexisting immiscible external fluids in the latest evolutionary stage. The O and C isotope characteristics of fluid-inclusion hosted CO2 and late-stage carbonates imply that the surrounding limestones were the source of the external fluids. The mineral-rich syenitic rocks at Mont Saint-Hilaire evolved as follows: first, alkalis, high field strength and large ion lithophile elements were pre-enriched in the (late) magmatic and subsequent hydrothermal stages; second, percolation of external fluids in equilibrium with the carbonate host-rocks and mixing processes with internal fluids as well as fluid-rock interaction governed dissolution of pre-existing minerals, element transport and precipitation of mineral assemblages determined by locally variable parameters. It is this hydrothermal interplay between internal and external fluids that is responsible for the mineral wealth found at Mont Saint-Hilair
Sulfide trace element signatures and S- and Pb-isotope geochemistry of porphyry copper and epithermal gold-base metal mineralization in the Elatsite–Chelopech ore field (Bulgaria)
The Elatsite–Chelopech ore field in the northern part of the Panagyurishte district in Central Bulgaria comprises numerous spatially associated porphyry copper and epithermal gold deposits and prospects. In addition to the mineralization and alteration features, trace elements, lead and sulfur isotope signatures of sulfide minerals from porphyry copper, base metal and gold-base metal deposits/prospects have been studied. LA-ICP-MS analyses of pyrite, arsenopyrite and sulfosalt minerals validate them as major carriers for Au, Ag, Sb, Se and Co. Pyrite from the three types of mineralization has specific geochemical characteristics. Pyrite from the porphyry copper deposits/prospects has generally lower total trace element content compared to pyrite from the epithermal prospects, except for Se, Co and Ni. Pyrite from the base metal and gold-base metal veins is enriched in As, Au, Ag, Sb and Pb. In pyrite from the base metal deposits, Co and Ni have contents comparable to the pyrite from the porphyry copper deposits, while pyrite from the gold-base metal veins shows lower Co and Ni. Arsenopyrite from these deposits shows similar features. Similarly, sphalerite from the gold-base metal veins also has lower Co content compared to sphalerite from the base metal veins but higher In and Cu contents. In addition to the close spatial relationships between the Elatsite and Gorna Kamenitsa porphyry Cu deposits and Negarstitsa-West and Dolna Kamenitsa base metal prospects, as well as similarities in the mineralization and alteration styles, the lead isotopic (206Pb/204Pb = 18.61–18.68, 207Pb/204Pb = 15.64–15.65 for porphyry and 206Pb/204Pb = 18.55–18.67, 207Pb/204Pb = 15.64–15.68 for base metal) and sulfur isotopic (δ34S values of −3 to +1‰ for porphyry and δ34S values of −1.7 to +3.5‰ for base metal) signatures of sulfides support the idea of a genetic link between these two types of deposits. The porphyry and base-metal mineralization result from a common major ore-forming event during the Late Cretaceous, corresponding to deep/higher-temperature and shallower/distal/lower-temperature environments, respectively. In particular, more radiogenic lead (206Pb/204Pb = 18.41–18.47, 207Pb/204Pb = 15.67–15.76) and slightly different sulfur isotopic compositions (δ34S values of +3.5 to +10.6‰) of sulfides from the distal gold-base metal veins of Kordunsko Dere, Svishti Plaz and Shipkite might be a consequence of the interaction of the ore-forming fluids with an external older crustal and isotopically positive S source. Alternatively, a different fluid source/event for the formation of these gold-base metal veins may be suggested
The ResourcePlan—An Instrument for Resource-Efficient Development of Urban Neighborhoods
In Germany, the current sectoral urban planning often leads to inefficient use of resources, partly because municipalities lack integrated planning instruments and argumentation strength toward politics, investors, or citizens. The paper develops the ResourcePlan as (i) legal and (ii) a planning instrument to support the efficient use of resources in urban neighborhoods. The integrative, multi-methodological approach addresses the use of natural resources in the building and infrastructural sectors of (i) water (storm- and wastewater) management, (ii) construction and maintenance of buildings and infrastructure, (iii) urban energy system planning, and (iv) land-use planning. First, the development as legal instrument is carried out, providing (i) premises for integrating resource protection at all legal levels and (ii) options for implementing the ResourcePlan within German municipal structures. Second, the evaluation framework for resource efficiency of the urban neighborhoods is set up for usage as a planning instrument. The framework provides a two-stage process that runs through the phases of setting up and implementing the ResourcePlan. (Eco)system services are evaluated as well as life cycle assessment and economic aspects. As a legal instrument, the ResourcePlan integrates resource protection into municipal planning and decision-making processes. The multi-methodological evaluation framework helps to assess inter-disciplinary resource efficiency, supports the spatial identification of synergies and conflicting goals, and contributes to transparent, resource-optimized planning decisions.BMBF, 033W102E, RESZ - Verbundvorhaben: R2Q - RessourcenPlan im Quartier - Teilprojekt 5: Ganzheitliche Bewertung der Ressourceneffizienz von Stadtquartiere
Consensus guidelines for the use and interpretation of angiogenesis assays
The formation of new blood vessels, or angiogenesis, is a complex process that plays important roles in growth and development, tissue and organ regeneration, as well as numerous pathological conditions. Angiogenesis undergoes multiple discrete steps that can be individually evaluated and quantified by a large number of bioassays. These independent assessments hold advantages but also have limitations. This article describes in vivo, ex vivo, and in vitro bioassays that are available for the evaluation of angiogenesis and highlights critical aspects that are relevant for their execution and proper interpretation. As such, this collaborative work is the first edition of consensus guidelines on angiogenesis bioassays to serve for current and future reference
Variations of the 44Ca/40Ca ratio in seawater during the past 24 million years: Evidence from d44Ca and d18O in Miocene phosphates
International audienc
DNA methylation analysis-New procedure for forensic age estimation
In the last decade, epigenetic age estimation based on DNA methylation using molecular genetic analysis procedures has been intensively investigated. It is now increasingly being applied in routine forensic casework, particularly for the age estimation of unknown donors of crime scene evidence. The aim of this review article is to provide an understanding of the scientific principles and practical application of epigenetic age estimation in the context of routine forensic casework. DNA methylation is introduced as a biomarker for chronological age and the principles of the mode of functioning of mathematical estimation models are explained. In addition, the most commonly used sequencing platforms for methylation analyses are explained and the respective strengths and weaknesses regarding their applicability to forensically relevant trace evidence material are discussed. A further focus of this review is the presentation of the results of epigenetic age estimation with suggestions for a comprehensible presentation of the precise description of prediction accuracies. Finally, the legal background is discussed to emphasize that the use of epigenetic age estimation does not reveal any genetically determined individual traits of a person but can be classified as a conventional method of medical diagnostic analyses
The Spreadsheet Energy System Model Generator (SESMG): A tool for the optimization of urban energy systems
v1.0.0 (2023-09-14) Breaking
feat(semantic_versioning.yml): update semantic versioning workflow
BREAKING CHANGE: (eaed3c2)
Ci
ci(build.yml): update checkout to v3 (bcc79a6)
ci(build.yml): set node.js version to the latest available version (40e9682)
ci(Pyinstaller_macos): update spec (836e09d)
ci(deployment): Update SESMG_linux.spec (bd88987)
ci(build_executables): remove MacOS from deployment - bugs (d95134e)
ci(JOSS): reduce workflow on push on the master branch pushes (354dfbe)
Documentation
docs(paper.md): typo (b741683)
docs(installation): clarifications regarding windows installation (addb37b)
docs(paper.md): typo (e415f24)
docs(timeseries_preparation.csv): fix of csv-style issue (0cbcd94)
docs(timeseries_preparation.csv): clarified instructions for heuristic selection (1c5f49a)
docs(timeseries_preparation.csv): added k-medoids and made correction regarding k-means (f699fca)
docs(installation): typo (4ee8818)
docs(installation): updated cbc installation steps (db68383)
docs(installation): included tip-boxes (82f719d)
docs(installation): typo note boxes (105d684)
docs(installation): typo (199b131)
docs(installation): typo (5a6e849)
docs(conf.py): fix rtd theme (6f99617)
docs(conf.py): try to fix rtd theme (212788d)
docs(installation): added warning messages to windows installation (24390a4)
docs(installation): added warning screenshots (dca7535)
docs(interface): added warning, to avoid user faults (bc19a9a)
docs(paper.md): typo (79ab24d)
docs(Examples): deleted one picture and upload a new one
Update a picture (57700ee)
docs(Examples): Added two new .png
Added two new .png in Examples (2eb6232)
docs(Examples): upload new image for examples
upload screenshot of timeseries simplification (29780ca)
docs(paper.md): added gui info (518a08a)
docs(paper.md): adapted authorships (b6676c5)
Unknown
citation(CITATION.cff): update version and authors' order
BREAKING CHANGE: (5d012af)
major(semantic_versioning.yml): update the creation process of the SESMG executables within the semantic versioning (96ef348)
Merge pull request #200 from SESMG/issue-188 - Including changes related to Issue #188
Including changes related to Issue #188 (cc62247)
docu(02.01.00_installation.rst): update description of the installation procedure: Windows Coin Or Optimization Suite, Linux warning (fdc1dbe)
code(GUI_st_global_functions.py): add windows cbc path to the system PATH variable (5fa9358)
code(GUI_global_functions): update image loading to PIL (e919247)
code(GUI): update demo tool image and text load (e8bd600)
code(GUI): remove development prints (b30b2eb)
code(spec): remove image file copy (b22baee)
code(GUI): fix image path (023b243)
code(GUI): try np.array png import (87d6dcb)
code(GUI): try bugfix image as url (5f37c24)
code(spec_files): fix windows paths to images (669dd38)
github(issue_template): update issue template (9af2ee6)
code(spec_files): deactivate warning, deactivate debug mode (8636524)
code( k_means_medoids.py): bugfix (2d81ba4)
code(GUI_global_functions): complete docstring (c43dff6)
code(GUI): add test prints for win path (2bf5602)
code(GUI): try to fix image path for win (3c714ac)
code(GUI_global_function): remove development prints (2265bda)
docu(installation): drop python installation, add linux cmd commands (bd7369c)
code(GUI_global): fix win dependencies check (330dffe)
code(GUI_global_functions): add path check for graphviz (cbf3208)
code(GUI_global_functions): add docstring (67eb348)
code(deployment): update pyside version from 2 to 6 to enable usage of plotlyjs (23bc319)
code(GUI_global): fix bug in win path definition (b3c5d1c)
code(GUI_global_functions): clean code and fix bug in win path definition (8b71fbf)
code(GUI_global_functions): add solver PATH definition for win (be2e77d)
code(GUI_global_functions): fix gurobi for Mac M1 (8e24719)
code(startscript): remove mac options (99a980a)
deployment(SESMG_macos.spec): update MacOS deployment (da201e7)
code(start_script): partly fix macOS window layer problem, improve pep8 conformity (4eeccf8)
code(GUI_st_global_functions): add linux paths (5d38a9a)
code(GUI): add example win cbc PATH for testing (2b141b5)
code(start_script): implement workaround for multiprocessing bug (fff0bda)
code(start_script): typo if command (2c5f684)
code(start_script): enable multiprocessing for win (0208100)
code(startscript): update streamlit config and config.toml (f00962f)
code(GUI): add udu error message for missing input (0f7054a)
code(GUI): update graphviz PATH for M2 (b183b7c)
code(GUI): update graphviz path for M2 (c9bc768)
code(pyinstaller): allow parallel tasks in pyside GUI (3712628)
code(GUI): update error message, fix dependencies check (2d1820b)
code(openpyxl): correct typo (1293553)
code(hook-sklearn): add threadpoolctl (e9224fb)
code(hook-sklearn): add dependency of sklearn (6a3e47b)
code(GUI): reactivate dependencies check (7575e63)
code(memory_profiler hook): add dependencies of memory profiler to the executable (253cc70)
code(oemof.thermal hook): add hook for oemof.thermal (4f9ac93)
code(sklearn_hook): remove bug (346a7ff)
code(GUI): reimplement Graphviz dependencies check (29965a2)
code(GUI): deactivate dependencies check (101ac85)
docu(installation): update MacOS installation (325b930)
code(pyinstaller_hooks): add hook for sklearn (c72a910)
code(pyinstaller_macos_executable): update to pyinstaller development branch version (2e192b1)
code(GUI): deactivate cbc-/gurobi-solver check (3a1112f)
Update GUI_st_global_functions.py (5e15b7c)
code(start_script.py): update start_script (c42d52d)
code(SESMG_windows.spec): update SESMG_windows.spec (63cc1f0)
code(pyinstaller_hooks): update pyinstaller hooks (60c1282)
code(GUI): drop duplicate (ca5aad9)
code(GUI): drop unused lines (5e0c3fd)
docu(troubleshooting): add known MacOS pyinstaller issue (031d962)
docu(installation): typo (ef62709)
docu(installation): update MacOS, add know issue (ebcbeb3)
docu(installation): update to new application (DEV) (8420dae)
code(Pyinstaller_windows): Update SESMG_windows.spec (623d456)
code(Pyinstaller_hooks): update streamlit hook (15e9915)
docu(results): typos (de7ebcb)
code(GUI): typo (e15081f)
code(GUI): fix result start page, update text (823c1e5)
code(SESMG_windows.spec): update pyinstaller spec file for windows executables (febe5fa)
code(start_script.py): update start_script.py for windows pyinstaller executable (429d726)
code(hooks): update pyinstaller hooks (f9bfa34)
publication(paper.md): Update order of authors (c4b6d29)
docu(results): update link (37f8a04)
docu(results): introduce new result folder structure (2e6ff87)
code(deployment): update building process of macos executable (8ea4122)
code(GUI): fix reference to help comment (ecf6274)
code(GUI): fix download button (85a9770)
code(deployment): update windows executable (6f24ec1)
code(GUI): update GUI cache to new folder structure (73d68ea)
code(deployment): update macos spec file (bce1539)
code(deployment): Update SESMG_macos.spec (347098b)
code(GUI): fix help comment reference (791465d)
code(urban_upscaling): change udu and GUI to new result folder structure (c5daa0d)
Update SESMG_macos.spec (37bd009)
Update build.yml (ebc1828)
code(): update macos executable (8025fdb)
typo(GUI_st): safe to save (16ab4a4)
typo(GUI_st): safe to save (41a302a)
code(start_script): add comments and improve pep8 conformity (c2e9fb7)
code(pareto_optimization.py): update to new result folder structure (2046f37)
code(GUI): add architecture to allow the user to set an individual result directory path (c3099f2)
code(): deployment update start_script (145e859)
code(): update spec files (ec0f836)
code(): update deployment algorithm (0e91f09)
Merge pull request #199 from SESMG/issue-194
Incorporation of reviewer comments listed in issue #194 (ff41ca0)
Merge pull request #198 from SESMG/issue-193
Incorporation of reviewer comments listed in issue #193 (37a72be)
code(GUI): switch GUI to new result folder structure (/user/documents/SESMG/results) (800ed79)
code(startscript): fix to be anaconda compatible (2ca089d)
code(Executable): add own hosted window by starting up the executable using pyside2 (362789c)
code(): add cbc system paths (18799d2)
code(): add missing import (58873f3)
code(): add graphviz dependency check (ce685e3)
code(): add missing / (8f4fb62)
code(): update paths for executables (79d40b5)
code(): fix executable paths (52afb14)
Merge pull request #195 from GregorBecker/deployment_development
Deployment development (c4677d5)
Update build.yml (fc06839)
update workflows (ef4a859)
Update semantic_versioning.yml (8533de5)
Update semantic_versioning.yml# (6fbee95)
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test(): Update semantic_versioning.yml (2a71a40)
update repository to enable pull request (7c4845d)
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Update build.yml (0ae69bb)
Create build.yml (8ceb3ea)
Update build_macos.yml (07f3ce0)
Update SESMG_macos.spec (d2e7a49)
update deployment (d466dd1)
update deployment actions (4253f8f)
restructure repository (6f396c0)
Update Windows_installation.cmd (79fde98)
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update installation files (e5682ac)
restructure repo (ef7a06c)
Delete start_script.spec (8b89e04)
Delete ci directory (f055863)
Update build_linux.yml (8a2e30b)
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Update SESMG_linux.spec (bc5505e)
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Create SESMG.desktop (925f80c)
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Rename SESMG_Linux.spec to SESMG_linux.spec (bbf462b)
Create build_linux.yml (e717ce6)
Create SESMG_Linux.spec (8a1525b)
Update create_graph.py (2f35514)
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Rename SESMG.spec to SESMG_macos.spec (792cf4f)
Rename build.yml to build_macos.yml (28a1756)
Update build_windows.yml (ada1df2)
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Create SESMG_windows.spec (e355214)
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Update build.yml (6153ccb)
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docu(02.02.06_examples.rst): correcting note boxes
correcting note boxes (e59fecf)
docu(02.02.06_examples.rst): correcting text
correcting text (849c84f)
Merge branch 'issue-194' of https://github.com/SESMG/SESMG into issue-194 (5cafeb1)
docu(02.02.06_examples.rst): update a picture
update the pareto diagram (9ab8fd3)
docu(02.02.06_examples.rst): added links to examples
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Adding example description (e19053a)
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docu(index.rst): minor adaption (fb4e517)
docu(paper.md): typo (5a1a972)
docu(main page): restructured main page (b84cc52)
docu(README.md): typo (f7c0db2)
docu(readme.md): updated link to example repository (df8a1ff)
docu(examples): added example section (44313ef)
docu(examples): removed obsolete folder (7e3d312)
docu(paper.md): language corrections with special focus on british/american english (dfd11b9)
docu(paper.bib): added Klemm.Review reference (56fa680)
CI(draft_pdf.yml): try to create pdf from issue branch (4a6556d)
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docu(paper.md): language corrections (2a7e79e)
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docu(paper.md): Adaption regarding reviewer comments
Adaption regarding the following reviewer comment: "This includes many technical terms that are not defined e.g. "sector coupling" (e97f373)
docu(paper.md): adaptions regarding reviewer suggestions
Adaptions regarding the following reviewer suggestion: "The current text in this part of the paper is more focussed on general energy modelling issues, rather than the specific challenge SESMG addresses. Given your focus on "low threshold entry", "no programming skills" and "advanced modelling features", I think you should properly motivate this in the Statement of Need section. At present, you just reiterate the functionality without providing a rationale or justification for them." (09acb64)
docu(paper.md): Adaptions regarding reviewer suggestions
Adaptions regarding the following reviewer suggestions:
"You do not include any references to other software designed for urban energy system modelling."
"Please add references to other software the provides similar functionality and explain what differentiates your software." (42d1283)
Update paper.md
Update regarding the following reviewer suggestion: "I think you could more clearly outline what functionality the software provides e.g. a browser-based graphical user interface, spreadsheets to provide data entry, comprehensive documentation on how to use it" (bb96e40)
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docu(Readme): Adaptions regarding issue #188 (64241b0)
docu(trouble_shooting.rst): add python version error from #191 (209e015)
installation(requirements.txt): remove pandas 2.0.0 from the suitable requirements
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docu(installation): adaptions regarding issue #188 (6d61716)
docu(installation): update regarding #188 (5fbdd90)
docu(paper.md): typo (d011adf)
docu(installation.rst): fix link (8694984)
docu(installation.rst): update installation instructions about #189 (7da178a)
docu(trouble_shooting.rst): fix docu design (98b94fd)
docu(trouble_shooting.rst): improve documentation about #189 (329e3d2)
docu(trouble_shooting.rst): add osmx/cartopy warning (27b0e8e)
docu(trouble_shooting.rst): add py 3.9.7 error (446a845)
docu(installation.rst): note about incompatibility with py 3.9.7 (1994462)
docu(trouble_shooting.rst): add windpower issue to M-12, fix code components M23-M27 (e7f9ae6)
docu(model_definition.rst): typo (7c5d8ee)
docu(structure_of_energy_systems.rst): remove caps from load profile names (682a483)
docu(trouble_shooting.rst): add python version installation issue (9520d8f)
docu(installation.rst): fix notes (b6c6353)
docu(installation.rst): add note for python version input (f5b905f)If you use this software, please cite it as below
"To Be Finally at Peace with Myself": A Qualitative Study Reflecting Experiences of the Meditation-Based Lifestyle Modification Program in Mild-to-Moderate Depression
Background: Meditation-Based Lifestyle Modification (MBLM) is a new mind-body intervention that is based on classical yoga; it implements virtue-based ethical living, physical yoga, and meditation in a therapeutic context. This qualitative study aimed at understanding better how depressive patients who received MBLM as a treatment experience intra- and interpersonal outcomes of their practice.
Methods: In a larger randomized controlled trial of MBLM in depressive outpatients, a subsample (n = 12) completed in-depth interviews. To determine short-term and long-term effects, cohorts were interviewed at two different times after intervention onset (T1 = 8 weeks; T2 = 6 months). Verbatim interview transcripts were analyzed by using thematic analysis.
Results: Three themes emerged in the interviews: (1) Reappraisal of past and present life patterns, leading to a reflection on one's own values; (2) Serenity, attained by states of calm, growing acceptance, and the ability to set boundaries; and (3) Mindful living as expressed by increased self-awareness, being more present, and conscious interactions. The ethical component of MBLM was identified as a key factor in individual empowerment and appreciation of one's own strengths. Systematic changes in the importance of reported themes after 6 months (T2) reflected the sustained effects of the intervention.
Conclusions: The findings speak clearly for the benefits of MBLM in the treatment of depression. In particular, the explicit therapeutic implementation of virtue-based ethics offers a valuable addition to previous yoga and meditation programs. Clinical Trials.gov ID: Clinical Trial Registration number: NCT0365222
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