5,774 research outputs found
Cones, pringles, and grain boundary landscapes in graphene topology
A polycrystalline graphene consists of perfect domains tilted at angle
{\alpha} to each other and separated by the grain boundaries (GB). These nearly
one-dimensional regions consist in turn of elementary topological defects,
5-pentagons and 7-heptagons, often paired up into 5-7 dislocations. Energy
G({\alpha}) of GB computed for all range 0<={\alpha}<=Pi/3, shows a slightly
asymmetric behavior, reaching ~5 eV/nm in the middle, where the 5's and 7's
qualitatively reorganize in transition from nearly armchair to zigzag
interfaces. Analysis shows that 2-dimensional nature permits the off-plane
relaxation, unavailable in 3-dimensional materials, qualitatively reducing the
energy of defects on one hand while forming stable 3D-landsapes on the other.
Interestingly, while the GB display small off-plane elevation, the random
distributions of 5's and 7's create roughness which scales inversely with
defect concentration, h ~ n^(-1/2)Comment: 9 pages, 4 figure
Theoretical analysis of the role of chromatin interactions in long-range action of enhancers and insulators
Long-distance regulatory interactions between enhancers and their target
genes are commonplace in higher eukaryotes. Interposed boundaries or insulators
are able to block these long distance regulatory interactions. The mechanistic
basis for insulator activity and how it relates to enhancer
action-at-a-distance remains unclear. Here we explore the idea that topological
loops could simultaneously account for regulatory interactions of distal
enhancers and the insulating activity of boundary elements. We show that while
loop formation is not in itself sufficient to explain action at a distance,
incorporating transient non-specific and moderate attractive interactions
between the chromatin fibers strongly enhances long-distance regulatory
interactions and is sufficient to generate a euchromatin-like state. Under
these same conditions, the subdivision of the loop into two topologically
independent loops by insulators inhibits inter-domain interactions. The
underlying cause of this effect is a suppression of crossings in the contact
map at intermediate distances. Thus our model simultaneously accounts for
regulatory interactions at a distance and the insulator activity of boundary
elements. This unified model of the regulatory roles of chromatin loops makes
several testable predictions that could be confronted with \emph{in vitro}
experiments, as well as genomic chromatin conformation capture and fluorescent
microscopic approaches.Comment: 10 pages, originally submitted to an (undisclosed) journal in May
201
Grain Boundaries in Graphene on SiC(000) Substrate
Grain boundaries in epitaxial graphene on the SiC(000) substrate are
studied using scanning tunneling microscopy and spectroscopy. All investigated
small-angle grain boundaries show pronounced out-of-plane buckling induced by
the strain fields of constituent dislocations. The ensemble of observations
allows to determine the critical misorientation angle of buckling transition
. Periodic structures are found among the flat
large-angle grain boundaries. In particular, the observed highly ordered grain boundary is assigned to the previously
proposed lowest formation energy structural motif composed of a continuous
chain of edge-sharing alternating pentagons and heptagons. This periodic grain
boundary defect is predicted to exhibit strong valley filtering of charge
carriers thus promising the practical realization of all-electric valleytronic
devices
Electronic transport in polycrystalline graphene
Most materials in available macroscopic quantities are polycrystalline.
Graphene, a recently discovered two-dimensional form of carbon with strong
potential for replacing silicon in future electronics, is no exception. There
is growing evidence of the polycrystalline nature of graphene samples obtained
using various techniques. Grain boundaries, intrinsic topological defects of
polycrystalline materials, are expected to dramatically alter the electronic
transport in graphene. Here, we develop a theory of charge carrier transmission
through grain boundaries composed of a periodic array of dislocations in
graphene based on the momentum conservation principle. Depending on the grain
boundary structure we find two distinct transport behaviours - either high
transparency, or perfect reflection of charge carriers over remarkably large
energy ranges. First-principles quantum transport calculations are used to
verify and further investigate this striking behaviour. Our study sheds light
on the transport properties of large-area graphene samples. Furthermore,
purposeful engineering of periodic grain boundaries with tunable transport gaps
would allow for controlling charge currents without the need of introducing
bulk band gaps in otherwise semimetallic graphene. The proposed approach can be
regarded as a means towards building practical graphene electronics.Comment: accepted in Nature Material
Low-energy electric dipole response in 120Sn
The electric dipole strength in 120Sn has been extracted from proton
inelastic scattering experiments at E_p = 295 MeV and at forward angles
including 0 degree. Below neutron threshoild it differs from the results of a
120Sn(gamma,gamma') experiment and peaks at an excitation energy of 8.3 MeV.
The total strength corresponds to 2.3(2)% of the energy-weighted sum rule and
is more than three times larger than what is observed with the (gamma,gamma')
reaction. This implies a strong fragmentation of the E1 strength and/or small
ground state branching ratios of the excited 1- states.Comment: 7 pages, 6 figure
Dipole polarizability of 120Sn and nuclear energy density functionals
The electric dipole strength distribution in 120Sn between 5 and 22 MeV has
been determined at RCNP Osaka from a polarization transfer analysis of proton
inelastic scattering at E_0 = 295 MeV and forward angles including 0{\deg}.
Combined with photoabsorption data an electric dipole polarizability
\alpha_D(120Sn) = 8.93(36) fm^3 is extracted. The dipole polarizability as
isovector observable par excellence carries direct information on the nuclear
symmetry energy and its density dependence. The correlation of the new value
with the well established \alpha_D(208Pb) serves as a test of its prediction by
nuclear energy density functionals (EDFs). Models based on modern Skyrme
interactions describe the data fairly well while most calculations based on
relativistic Hamiltonians cannot.Comment: 6 pages, 4 figure
Epidemiology, patterns of care, and mortality for patients with acute respiratory distress syndrome in intensive care units in 50 countries
IMPORTANCE: Limited information exists about the epidemiology, recognition, management, and outcomes of patients with the acute respiratory distress syndrome (ARDS).
OBJECTIVES: To evaluate intensive care unit (ICU) incidence and outcome of ARDS and to assess clinician recognition, ventilation management, and use of adjuncts-for example prone positioning-in routine clinical practice for patients fulfilling the ARDS Berlin Definition.
DESIGN, SETTING, AND PARTICIPANTS:The Large Observational Study to Understand the Global Impact of Severe Acute Respiratory Failure (LUNG SAFE) was an international, multicenter, prospective cohort study of patients undergoing invasive or noninvasive ventilation, conducted during 4 consecutive weeks in the winter of 2014 in a convenience sample of 459 ICUs from 50 countries across 5 continents.
EXPOSURES:Acute respiratory distress syndrome.
MAIN OUTCOMES AND MEASURES: The primary outcome was ICU incidence of ARDS. Secondary outcomes included assessment of clinician recognition of ARDS, the application of ventilatory management, the use of adjunctive interventions in routine clinical practice, and clinical outcomes from ARDS.
RESULTS: Of 29,144 patients admitted to participating ICUs, 3022 (10.4%) fulfilled ARDS criteria. Of these, 2377 patients developed ARDS in the first 48 hours and whose respiratory failure was managed with invasive mechanical ventilation. The period prevalence of mild ARDS was 30.0% (95% CI, 28.2%-31.9%); of moderate ARDS, 46.6% (95% CI, 44.5%-48.6%); and of severe ARDS, 23.4% (95% CI, 21.7%-25.2%). ARDS represented 0.42 cases per ICU bed over 4 weeks and represented 10.4% (95% CI, 10.0%-10.7%) of ICU admissions and 23.4% of patients requiring mechanical ventilation. Clinical recognition of ARDS ranged from 51.3% (95% CI, 47.5%-55.0%) in mild to 78.5% (95% CI, 74.8%-81.8%) in severe ARDS. Less than two-thirds of patients with ARDS received a tidal volume 8 of mL/kg or less of predicted body weight. Plateau pressure was measured in 40.1% (95% CI, 38.2-42.1), whereas 82.6% (95% CI, 81.0%-84.1%) received a positive end-expository pressure (PEEP) of less than 12 cm H2O. Prone positioning was used in 16.3% (95% CI, 13.7%-19.2%) of patients with severe ARDS. Clinician recognition of ARDS was associated with higher PEEP, greater use of neuromuscular blockade, and prone positioning. Hospital mortality was 34.9% (95% CI, 31.4%-38.5%) for those with mild, 40.3% (95% CI, 37.4%-43.3%) for those with moderate, and 46.1% (95% CI, 41.9%-50.4%) for those with severe ARDS.
CONCLUSIONS AND RELEVANCE: Among ICUs in 50 countries, the period prevalence of ARDS was 10.4% of ICU admissions. This syndrome appeared to be underrecognized and undertreated and associated with a high mortality rate. These findings indicate the potential for improvement in the management of patients with ARDS
Beyond the neutron drip line: The unbound oxygen isotopes (25)O and (26)O
This is the publisher's version, and is also available electronically from http://journals.aps.org/prc/abstract/10.1103/PhysRevC.88.034313.The very neutron-rich oxygen isotopes 25O and 26O are investigated experimentally and theoretically. The unbound states are populated in an experiment performed at the R3B-LAND setup at GSI via proton-knockout reactions from 26F and 27F at relativistic energies around 442 and 414 MeV/nucleon, respectively. From the kinematically complete measurement of the decay into 24O plus one or two neutrons, the 25O ground-state energy and width are determined, and upper limits for the 26O ground-state energy and lifetime are extracted. In addition, the results provide indications for an excited state in 26O at around 4 MeV. The experimental findings are compared to theoretical shell-model calculations based on chiral two- and three-nucleon (3N) forces, including for the first time residual 3N forces, which are shown to be amplified as valence neutrons are added
Electric dipole polarizability of Ca
The electric dipole strength distribution in Ca between 5 and 25 MeV
has been determined at RCNP, Osaka, from proton inelastic scattering
experiments at very forward angles. Combined with total photoabsorption data at
higher excitation energy, this enables an extraction of the electric dipole
polarizability (Ca) = 1.92(17) fm. Together with
the measured in Ca, it provides a stringent test of
modern theoretical approaches, including coupled cluster calculations with
chiral effective field theory interactions and state-of-the art energy density
functionals. The emerging picture is that for this medium-mass region dipole
polarizabilities are well described theoretically, with important constraints
for the neutron skin in Ca and related equation of state quantities.Comment: 6 pages, 3 figure
Enrichment analysis of Alu elements with different spatial chromatin proximity in the human genome
Transposable elements (TEs) have no longer been totally considered as “junk DNA” for quite a time since the continual discoveries of their multifunctional roles in eukaryote genomes. As one of the most important and abundant TEs that still active in human genome, Alu, a SINE family, has demonstrated its indispensable regulatory functions at sequence level, but its spatial roles are still unclear. Technologies based on 3C(chromosomeconformation capture) have revealed the mysterious three-dimensional structure of chromatin, and make it possible to study the distal chromatin interaction in the genome. To find the role TE
playing in distal regulation in human genome, we compiled the new released Hi-C data, TE annotation, histone marker annotations, and the genome-wide methylation data to operate correlation analysis, and found that the density of Alu elements showed a strong positive correlation with the level of chromatin interactions (hESC: r=0.9, P<2.2×1016; IMR90 fibroblasts: r = 0.94, P < 2.2 × 1016) and also have a significant positive correlation withsomeremote functional DNA elements like enhancers and promoters (Enhancer: hESC: r=0.997, P=2.3×10−4; IMR90: r=0.934, P=2×10−2; Promoter: hESC: r = 0.995, P = 3.8 × 10−4; IMR90: r = 0.996, P = 3.2 × 10−4). Further investigation involving GC content and methylation status showed the GC content of Alu covered sequences shared a similar pattern with that of the overall sequence, suggesting that Alu elements also function as the GC nucleotide and CpG site provider. In all, our results suggest that the Alu elements may act as an alternative parameter to evaluate the Hi-C data, which is confirmed by the correlation analysis of Alu elements and histone markers. Moreover, the GC-rich Alu sequence can bring high GC content and methylation flexibility to the regions with more distal chromatin contact, regulating the transcription of tissue-specific genes
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