High abundance of virulence gene homologues in marine bacteria

Marine bacteria can cause harm to single-celled and multicellular eukaryotes. However, relatively little is known about the underlying genetic basis for marine bacterial interactions with higher organisms. We examined whole-genome sequences from a large number of marine bacteria for the prevalence of homologues to virulence genes and pathogenicity islands known from bacteria that are pathogenic to terrestrial animals and plants. As many as 60 out of 119 genomes of marine bacteria, with no known association to infectious disease, harboured genes of virulence-associated types III, IV, V and VI protein secretion systems. Type III secretion was relatively uncommon, while type IV was widespread among alphaproteobacteria (particularly among roseobacters) and type VI was primarily found among gammaproteobacteria. Other examples included homologues of the Yersinia murine toxin and a phage-related ‘antifeeding’ island. Analysis of the Global Ocean Sampling metagenomic data indicated that virulence genes were present in up to 8% of the planktonic bacteria, with highest values in productive waters. From a marine ecology perspective, expression of these widely distributed genes would indicate that some bacteria infect or even consume live cells, that is, generate a previously unrecognized flow of organic matter and nutrients directly from eukaryotes to bacteria

Salmonella – the ultimate insider. Salmonella virulence factors that modulate intracellular survival

Salmonella enterica serovar Typhimurium is a common facultative intracellular pathogen that causes food-borne gastroenteritis in millions of people worldwide. Intracellular survival and replication are important virulence determinants and the bacteria can be found in a variety of phagocytic and non-phagocytic cells in vivo. Invasion of host cells and intracellular survival are dependent on two type III secretion systems, T3SS1 and T3SS2, each of which translocates a distinct set of effector proteins. However, other virulence factors including ion transporters, superoxide dismutase, flagella and fimbriae are also involved in accessing and utilizing the intracellular niche

A Candidate Approach Implicates the Secreted Salmonella Effector Protein SpvB in P-Body Disassembly

P-bodies are dynamic aggregates of RNA and proteins involved in several post-transcriptional regulation processes. P-bodies have been shown to play important roles in regulating viral infection, whereas their interplay with bacterial pathogens, specifically intracellular bacteria that extensively manipulate host cell pathways, remains unknown. Here, we report that Salmonella infection induces P-body disassembly in a cell type-specific manner, and independently of previously characterized pathways such as inhibition of host cell RNA synthesis or microRNA-mediated gene silencing. We show that the Salmonella-induced P-body disassembly depends on the activation of the SPI-2 encoded type 3 secretion system, and that the secreted effector protein SpvB plays a major role in this process. P-body disruption is also induced by the related pathogen, Shigella flexneri, arguing that this might be a new mechanism by which intracellular bacterial pathogens subvert host cell function

ADP-ribosylation of arginine

Arginine adenosine-5′-diphosphoribosylation (ADP-ribosylation) is an enzyme-catalyzed, potentially reversible posttranslational modification, in which the ADP-ribose moiety is transferred from NAD+ to the guanidino moiety of arginine. At 540 Da, ADP-ribose has the size of approximately five amino acid residues. In contrast to arginine, which, at neutral pH, is positively charged, ADP-ribose carries two negatively charged phosphate moieties. Arginine ADP-ribosylation, thus, causes a notable change in size and chemical property at the ADP-ribosylation site of the target protein. Often, this causes steric interference of the interaction of the target protein with binding partners, e.g. toxin-catalyzed ADP-ribosylation of actin at R177 sterically blocks actin polymerization. In case of the nucleotide-gated P2X7 ion channel, ADP-ribosylation at R125 in the vicinity of the ligand-binding site causes channel gating. Arginine-specific ADP-ribosyltransferases (ARTs) carry a characteristic R-S-EXE motif that distinguishes these enzymes from structurally related enzymes which catalyze ADP-ribosylation of other amino acid side chains, DNA, or small molecules. Arginine-specific ADP-ribosylation can be inhibited by small molecule arginine analogues such as agmatine or meta-iodobenzylguanidine (MIBG), which themselves can serve as targets for arginine-specific ARTs. ADP-ribosylarginine specific hydrolases (ARHs) can restore target protein function by hydrolytic removal of the entire ADP-ribose moiety. In some cases, ADP-ribosylarginine is processed into secondary posttranslational modifications, e.g. phosphoribosylarginine or ornithine. This review summarizes current knowledge on arginine-specific ADP-ribosylation, focussing on the methods available for its detection, its biological consequences, and the enzymes responsible for this modification and its reversal, and discusses future perspectives for research in this field

The Salmonella enterica virulence : its role in bacterial adaption to mammalian and protozoan cells

Salmonellae are Gram-negative enteric bacteria and facultative intracellular pathogens responsible for a diversity of illnesses in a wide range of hosts, including man. Many serovars of Salmonella enterica harbor a plasmid that enhances bacterial virulence in infection models, and that seems to promote extraintestinal infection in man. Consequently, the plasmid has been referred to as the"virulence plasmid". The virulence plasmid varies in its constitution among different serovars, but all these plasmids carry in common the highly conserved spv (Salmonella plasmid virulence) gene cluster. The spv gene cluster consists of five genes, spvRABCD with main promoters in front of spvR and spvA. The predicted amino acid sequence of SpvR positions it to the LysR/MetR family of prokaryotic transcriptional regulators, and functional analyses have confirmed SpvR to act as a transcriptional activator of spv expression. While the spv genes represent a major virulence trait of the plasmid, the function of the SpvABCD proteins and the mechanism by which they interact with the host are currently not understood. The work described in this thesis aims at understanding the role of Spv proteins in infection of mammalian and protozoan cells. The results presented in this thesis demonstrate that one of the Spv proteins, SpvB, functions as a mono (ADP-ribosyl) transferase. The SpvB protein uses actin as a substrate for ribosylation and thereby hinders actin polymerization in vitro. Microscopic examination of MDCK cells infected with S. enterica revealed morphological changes and disappearance of F- actin. When the ability of Salmonellae to infect and replicate in axenic Acanthamoeba was studied, electron microscopy of Salmonella-infected A. rhysodes showed the replicating bacteria to be localized within membrane-bound vacuoles. Prolonged incubation of the bacteria-amoebae cultures resulted in a gradual change in amoebae morphology, partially dependent on SpvB, and in subsequent detachment and disintegration of the host cells. In parallel, we demonstrate that in vitro SpvB-mediates label transfer from [ 32p]-NAD to a 43kDa protein that co-migrate with bovine thymus beta/gamma-actin whereas A. rhysodes cell lysate prevent SpvB-mediated [32p] -NAD-dependent labeling of thymus beta/gamma-actin Although we could not demonstrate any in situ SpvB-mediated modification of A. rhysodes proteins during infection, we did observe Spv-independent label transfer from [32p] -NAD to an 80-kDa protein. This labeling was dependent on infection, required permeabilization of the amoebae, and did not occur when infected with a laboratory strain of E. coli or when the mono (ADPribosyl) transferase inhibitor novobiocin was applied. Our findings show that a facultative intracellular parasite can apply a classical bacterial toxin activity, ADP-ribosylation, to modify mammalian actin during intracellular replication, and that the spv locus is active during bacterial intracellular infection of a protozoan host

Acanthamoeba S13WT relies on its bacterial endosymbiont to backpack human pathogenic bacteria and resist Legionella infection on solid media

Soil-borne amoeba Acanthamoeba S13WT has an endosymbiotic relationship with an environmental Neochlamydia bacterial strain. However, regardless of extensive experiments in liquid media, the biological advantage of the symbiosis remained elusive. We therefore explored the role of the endosymbiont in predator-prey interactions on solid media. A mixed culture of the symbiotic or aposymbiotic amoebae and GFP-expressing Escherichia coli or Salmonella Enteritidis was spotted onto the centre of a LB or B-CYE agar plate preinoculated with a ring of mCherry-expressing Legionella pneumophila (Legionella wall'). The spread of the amoebae on the plate was assessed using a fluorescence imaging system or scanning electron microscopy. As a result, in contrast to the aposymbiotic amoebae, the symbiotic amoebae backpacked these GFP-expressing bacteria and formed flower-like fluorescence patterns in an anticlockwise direction. Other bacteria (Pseudomonas aeruginosa and Stenotrophomonas maltophilia), but not Staphylococcus aureus, were also backpacked by the symbiotic amoebae on LB agar, although lacked the movement to anticlockwise direction. Furthermore, in contrast to the aposymbiotic amoebae, the symbiotic amoebae backpacking the E. coli broke through the Legionella wall' on B-CYE agar plates. Thus, we concluded that Acanthamoeba S13WT required the Neochlamydia endosymbiont to backpack human pathogenic bacteria and resist Legionella infection on solid agar

Viability of Listeria monocytogenes in co-culture with Acanthamoeba spp.

© 2008 Federation of European Microbiological Societies/Blackwell Publishing LtdListeria monocytogenes is a human pathogen, ubiquitous in the environment, and can grow and survive under a wide range of environmental conditions. It contaminates foods via raw materials or food-processing environments. However, the current knowledge of its ecology and, in particular, the mode of environmental survival and transmission of this intracellular pathogen remains limited. Research has shown that several intracellular pathogens are able to survive or replicate within free-living amoebae. To examine the viability of L. monocytogenes in interaction with Acanthamoeba spp., bacteria were co-cultured with three freshly isolated amoebae, namely Acanthamoeba polyphaga, Acanthamoeba castellanii and Acanthamoeba lenticulata. The survival of bacteria and amoebae was determined using culture techniques and microscopy. Under the experimental conditions used, all amoebae were able to eliminate bacteria irrespective of the hly gene. Bacteria did not survive or replicate within amoeba cells. However, extra-amoebic bacteria grew saprophytically on materials released from amoebae, which may play an important role in the survival of bacteria under extreme environmental conditions.Alisha Akya, Andrew Pointon and Connor Thoma