431 research outputs found
Automated hippocampal segmentation in 3D MRI using random undersampling with boosting algorithm
Charged hadrons production in p-p and Pb-Pb interactions at the ALICE experiment
The aim of the ALICE experiment at the LHC is the study of
the nuclear matter under conditions of extreme energy density and temperature. Under these conditions a deconfined phase, in which quarks and gluons are no longer
confined to individual nucleons, the Quark Gluon Plasma, is predicted by Lattice-QCD. In this context the precise measurement of charged particles spectra produced in heavy ions and proton-proton collisions is a fundamental tool to study the physics of the Quark Gluon Plasma. After a brief review of ALICE identification techniques to extract particle yields, we present the identified pions, kaons and protons spectra obtained in p-p (√s = 7TeV) and Pb-Pb (√sNN = 2.76TeV) collisions
A Computer Aided Detection system for mammographic images implemented on a GRID infrastructure
The use of an automatic system for the analysis of mammographic images has
proven to be very useful to radiologists in the investigation of breast cancer,
especially in the framework of mammographic-screening programs. A breast
neoplasia is often marked by the presence of microcalcification clusters and
massive lesions in the mammogram: hence the need for tools able to recognize
such lesions at an early stage. In the framework of the GPCALMA (GRID Platform
for Computer Assisted Library for MAmmography) project, the co-working of
italian physicists and radiologists built a large distributed database of
digitized mammographic images (about 5500 images corresponding to 1650
patients) and developed a CAD (Computer Aided Detection) system, able to make
an automatic search of massive lesions and microcalcification clusters. The CAD
is implemented in the GPCALMA integrated station, which can be used also for
digitization, as archive and to perform statistical analyses. Some GPCALMA
integrated stations have already been implemented and are currently on clinical
trial in some italian hospitals. The emerging GRID technology can been used to
connect the GPCALMA integrated stations operating in different medical centers.
The GRID approach will support an effective tele- and co-working between
radiologists, cancer specialists and epidemiology experts by allowing remote
image analysis and interactive online diagnosis.Comment: 5 pages, 5 figures, to appear in the Proceedings of the 13th
IEEE-NPSS Real Time Conference 2003, Montreal, Canada, May 18-23 200
MRI analysis for Hippocampus segmentation on a distributed infrastructure
Medical image computing raises new challenges due to the scale and the complexity of the required analyses. Medical image databases are currently available to supply clinical diagnosis. For instance, it is possible to provide diagnostic information based on an imaging biomarker comparing a single case to the reference group (controls or patients with disease). At the same time many sophisticated and computationally intensive algorithms have been implemented to extract useful information from medical images. Many applications would take great advantage by using scientific workflow technology due to its design, rapid implementation and reuse. However this technology requires a distributed computing infrastructure (such as Grid or Cloud) to be executed efficiently. One of the most used workflow manager for medical image processing is the LONI pipeline (LP), a graphical workbench developed by the Laboratory of Neuro Imaging (http://pipeline.loni.usc.edu). In this article we present a general approach to submit and monitor workflows on distributed infrastructures using LONI Pipeline, including European Grid Infrastructure (EGI) and Torque-based batch farm. In this paper we implemented a complete segmentation pipeline in brain magnetic resonance imaging (MRI). It requires time-consuming and data-intensive processing and for which reducing the computing time is crucial to meet clinical practice constraints. The developed approach is based on web services and can be used for any medical imaging application
Multiplicity dependence of jet-like two-particle correlations in p-Pb collisions at = 5.02 TeV
Two-particle angular correlations between unidentified charged trigger and
associated particles are measured by the ALICE detector in p-Pb collisions at a
nucleon-nucleon centre-of-mass energy of 5.02 TeV. The transverse-momentum
range 0.7 5.0 GeV/ is examined,
to include correlations induced by jets originating from low
momen\-tum-transfer scatterings (minijets). The correlations expressed as
associated yield per trigger particle are obtained in the pseudorapidity range
. The near-side long-range pseudorapidity correlations observed in
high-multiplicity p-Pb collisions are subtracted from both near-side
short-range and away-side correlations in order to remove the non-jet-like
components. The yields in the jet-like peaks are found to be invariant with
event multiplicity with the exception of events with low multiplicity. This
invariance is consistent with the particles being produced via the incoherent
fragmentation of multiple parton--parton scatterings, while the yield related
to the previously observed ridge structures is not jet-related. The number of
uncorrelated sources of particle production is found to increase linearly with
multiplicity, suggesting no saturation of the number of multi-parton
interactions even in the highest multiplicity p-Pb collisions. Further, the
number scales in the intermediate multiplicity region with the number of binary
nucleon-nucleon collisions estimated with a Glauber Monte-Carlo simulation.Comment: 23 pages, 6 captioned figures, 1 table, authors from page 17,
published version, figures at
http://aliceinfo.cern.ch/ArtSubmission/node/161
Multi-particle azimuthal correlations in p-Pb and Pb-Pb collisions at the CERN Large Hadron Collider
Measurements of multi-particle azimuthal correlations (cumulants) for charged
particles in p-Pb and Pb-Pb collisions are presented. They help address the
question of whether there is evidence for global, flow-like, azimuthal
correlations in the p-Pb system. Comparisons are made to measurements from the
larger Pb-Pb system, where such evidence is established. In particular, the
second harmonic two-particle cumulants are found to decrease with multiplicity,
characteristic of a dominance of few-particle correlations in p-Pb collisions.
However, when a gap is placed to suppress such correlations,
the two-particle cumulants begin to rise at high-multiplicity, indicating the
presence of global azimuthal correlations. The Pb-Pb values are higher than the
p-Pb values at similar multiplicities. In both systems, the second harmonic
four-particle cumulants exhibit a transition from positive to negative values
when the multiplicity increases. The negative values allow for a measurement of
to be made, which is found to be higher in Pb-Pb collisions at
similar multiplicities. The second harmonic six-particle cumulants are also
found to be higher in Pb-Pb collisions. In Pb-Pb collisions, we generally find
which is indicative of a Bessel-Gaussian
function for the distribution. For very high-multiplicity Pb-Pb
collisions, we observe that the four- and six-particle cumulants become
consistent with 0. Finally, third harmonic two-particle cumulants in p-Pb and
Pb-Pb are measured. These are found to be similar for overlapping
multiplicities, when a gap is placed.Comment: 25 pages, 11 captioned figures, 3 tables, authors from page 20,
published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/87
Dynamic configuration and data security for bioinformatics cloud services with the Laniakea Dashboard
Technological advances in high-throughput technologies improve our ability to explore the molecular mechanisms of life. Computational infrastructures for scientific applications fulfil a critical role in harnessing this potential. However, there is an ongoing need to improve accessibility and implement robust data security technologies to allow the processing of sensitive data, particularly human genetic data. Scientific clouds have emerged as a promising solution to meet these needs. We present three components of the Laniakea software stack, initially developed to support the provision of private on-demand Galaxy instances. These components can be adopted by providers of scientific cloud services built on the INDIGO PaaS layer. The Dashboard translates configuration template files into user-friendly web interfaces, enabling the easy configuration and launch of on-demand applications. The secret management and the encryption components, integrated within the Dashboard, support the secure handling of passphrases and credentials and the deployment of block-level encrypted storage volumes for managing sensitive data in the cloud environment. By adopting these software components, scientific cloud providers can develop convenient, secure and efficient on-demand services for their users
Актуальні питання реалізації іпотечних зобов'язань в нотаріальному процесі
Стаття присвячена теоретичному дослідженню важливості використання існуючих механізмів превентивної юстиції та дієвості правозахисної функції нотаріату.
Доведено, що нотаріус як гарант превентивності правовідносин реалізує свої правозахисні функції не лише на стадії реалізації іпотечних зобовязань, шляхом вчинення виконавчого напису на борговому документі, а і на стадії узгодження та викладення всіх
істотних умов договору.
Ключові слова: нотаріат; правозахисна функція нотаріату; виконання зобовязань; превентивна юстиція.Статья посвящена теоретическому исследованию необходимости использования
существующих механизмов превентивной юстиции и действенности правозащитной
функции нотариата. Доказывается, что нотариус как гарант превентивности правоотношений реализует свои правозащитные функции не только на стадии реализации
ипотечных обязательств, в связи с совершением исполнительной надписи на долговом
документе, а и на стадии согласования и изложения всех существенных условий договора.
Ключевые слова: нотариат; правозащитная функция нотариату; исполнение обязательств; превентивная юстиция.This article is dedicated into theoretical research of importance in using special mechanism of prevention justitia and acting law defender functions of notoriety. It is argued that
notaries as a guaranty of prevention law relation realizes his law defender functions not only
on the stage of realization ipothek obligations, making performance inscription on the duty
document, but on the stage of consenting and stating all existence conditions of contract.
Key words: notoriety, law defender function of notaries, making obligations, prevention
justitia
Crowdsourced estimation of cognitive decline and resilience in Alzheimer's disease
Identifying accurate biomarkers of cognitive decline is essential for advancing early diagnosis and prevention therapies in Alzheimer's disease. The Alzheimer's disease DREAM Challenge was designed as a computational crowdsourced project to benchmark the current state-of-the-art in predicting cognitive outcomes in Alzheimer's disease based on high dimensional, publicly available genetic and structural imaging data. This meta-analysis failed to identify a meaningful predictor developed from either data modality, suggesting that alternate approaches should be considered for prediction of cognitive performance
K0S and Λ production in Pb-Pb collisions at sNN−−−−√=2.76 TeV
The ALICE measurement of K0S and Λ production at midrapidity in Pb-Pb collisions at sNN−−−√=2.76 TeV is presented. The transverse momentum (pT) spectra are shown for several collision centrality intervals and in the pT range from 0.4 GeV/c (0.6 GeV/c for Λ) to 12 GeV/c. The pT dependence of the Λ/K0S ratios exhibits maxima in the vicinity of 3 GeV/c, and the positions of the maxima shift towards higher pT with increasing collision centrality. The magnitude of these maxima increases by almost a factor of three between most peripheral and most central Pb-Pb collisions. This baryon excess at intermediate pT is not observed in pp interactions at s√=0.9 TeV and at s√=7 TeV. Qualitatively, the baryon enhancement in heavy-ion collisions is expected from radial flow. However, the measured pT spectra above 2 GeV/c progressively decouple from hydrodynamical-model calculations. For higher values of pT, models that incorporate the influence of the medium on the fragmentation and hadronization processes describe qualitatively the pT dependence of the Λ/K0S ratio
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