Cross-species tests of 45 microsatellite loci isolated from different species of ungulates in the Iberian red deer (Cervus elaphus hispanicus) to generate a multiplex panel

The Iberian red deer (Cervus elaphus hispanicus) is an emblematic game species in Spain. To generate a battery of polymorphic markers for multiplex polymerase chain reactions for the Spanish red deer, 45 loci isolated in different species of ungulates were tested. Of the primers tested, 27 amplified but only 21 were polymorphic. Eleven of these markers were subsequently optimized for multiplex in four polymerase chain reactions. This allows analysing several molecular markers jointly to substantially reduce costs. Finally, we report descriptive summary statistics such as number of alleles for the former and also test of disequilibria and heterozygosity for the latter. © 2008 The Authors.Peer Reviewe

Novedades para el Pre-Rif del Jbel Zalagh (Marruecos)

New taxa from the Pre-Rif of the Jbel Zalagh (Morocco)Palabras clave. Flora, corología, Pre-Rif, Jbel Zalagh, N Marruecos.Key words. Flora, chorology, Pre-Rif, Jbel Zalagh, Norther Morocco

Fur or feather? Feeding preferences of species of Culicoides biting midges in Europe

© 2014 Elsevier Ltd. Understanding the feeding preferences of haematophagous insects is critical to depicting the amplification and transmission networks of pathogens and identifying key vector species for surveillance programs. In the case of species from genus Culicoides, many of which are important vectors of pathogens causing animal diseases, information from molecular studies on the feeding habits of females is expanding but still limited for a significant fraction of competent vectors of Culicoides-borne pathogens. In spite of these limitations, recent studies highlight that most Culicoides species are able to feed on several vertebrate species, but present clear preferences for mammals or birds.Peer Reviewe

A synthesis of Eurasian Curlew (Numenius arquata arquata) demography and population viability to inform its management

The European population of Eurasian Curlew Numenius arquata arquata, a nearthreatened wader subspecies, has undergone pronounced population declines over the past 30 years. To assess the demography and viability of its global population, we surveyed studies quantifying demographic rates (productivity and survival) and complemented this review with new estimates of survival probability at the flyway scale. Then, using a demographic model, we estimated population growth rates while accounting for the range of variation of demographic parameters, and compared these estimates (expected based on demographic rates) with those observed based on population censuses. Both observed and expected average growth rates were negative but the observed rates were higher than estimates from demographic models (λ = 0.98–0.99 compared with 0.85–0.95). This discrepancy implies that there is geographical variation in the demography of different populations that is not fully covered by current demographic data, namely unstudied regions with higher productivity. According to our calculations, at the flyway scale, productivity is currently c. 0.57 fledglings per pair per year, higher than the average reported productivity of 0.29, but lower than the 0.68 needed to achieve a stable global population size (λ = 1). Adult survival, estimated at 0.90, was the most sensitive parameter determining population growth rates, but the low productivity levels over the last few decades seems to be the most probable cause of population declines. The negative population growth rates require immediate conservation actions to preserve adult survival and increase the extremely low productivity in western and northern European populations to values above 0.68 fledglings per pair per year. We hope our synthesis on the demographic status of Curlew in Europe will encourage the collection of more demographic data and allow concrete management goals at the flyway scale to be established in order to recover the global population of this iconic species.Fédération Nationale des Chasseurs (Grant/Award Number: "FNC-PSN-PR11B-2013")

The genetic landscape of the Iberian red deer (Cervus elaphus hispanicus) after 30 years of big-game hunting in southern Spain

© 2015 The Wildlife Society. The Iberian red deer (Cervus elaphus hispanicus) suffered a striking collapse of its populations during the first half of the 20th century due to excessive hunting. In Andalusia, southern Spain, re-colonization took place from a few relict populations through natural dispersal, and through artificial reintroductions for big-game hunting. How the population decline influenced genetic diversity, and its current distribution after the re-colonization and intensive hunting practices are unclear. We addressed these questions by analyzing nuclear microsatellite variability from 58 red deer populations distributed throughout Andalusia. Our results showed a relatively high genetic variability spatially structured into 5 clusters, corresponding to the locations of relict populations. This indicates that the red deer's current genetic background has presumably retained much of the genetic variation present in those relict populations. We also found that a substantial portion (32%) of the populations displays some degree of inbreeding. We suggest that new herds should be established using individuals from the different genetic clusters, and a careful monitoring of the breeder's genetic background to prevent further inbreeding and inadvertent hybridization. Failure to do so could lead to loss of genetic diversity and the dilution of the genetic identity of the Iberian red deer.Peer Reviewe

Oxidative stress in wild boars naturally and experimentally infected with mycobacterium bovis

This is an open access article distributed under the terms of the Creative Commons Attribution License.-- et al.Reactive oxygen and nitrogen species (ROS-RNS) are important defence substances involved in the immune response against pathogens. An excessive increase in ROS-RNS, however, can damage the organism causing oxidative stress (OS). The organism is able to neutralise OS by the production of antioxidant enzymes (AE); hence, tissue damage is the result of an imbalance between oxidant and antioxidant status. Though some work has been carried out in humans, there is a lack of information about the oxidant/antioxidant status in the presence of tuberculosis (TB) in wild reservoirs. In the Mediterranean Basin, wild boar (Sus scrofa) is the main reservoir of TB. Wild boar showing severe TB have an increased risk to Mycobacterium spp. shedding, leading to pathogen spreading and persistence. If OS is greater in these individuals, oxidant/antioxidant balance in TB-affected boars could be used as a biomarker of disease severity. The present work had a two-fold objective: i) to study the effects of bovine TB on different OS biomarkers (namely superoxide dismutase (SOD), catalasa (CAT), glutathione peroxidase (GPX), glutathione reductase (GR) and thiobarbituric acid reactive substances (TBARS)) in wild boar experimentally challenged with Mycobacterium bovis, and ii) to explore the role of body weight, sex, population and season in explaining the observed variability of OS indicators in two populations of free-ranging wild boar where TB is common. For the first objective, a partial least squares regression (PLSR) approach was used whereas, recursive partitioning with regression tree models (RTM) were applied for the second. A negative relationship between antioxidant enzymes and bovine TB (the more severe lesions, the lower the concentration of antioxidant biomarkers) was observed in experimentally infected animals. The final PLSR model retained the GPX, SOD and GR biomarkers and showed that 17.6% of the observed variability of antioxidant capacity was significantly correlated with the PLSR X's component represented by both disease status and the age of boars. In the samples from free-ranging wild boar, however, the environmental factors were more relevant to the observed variability of the OS biomarkers than the TB itself. For each OS biomarker, each RTM was defined as a maximum by one node due to the population effect. Along the same lines, the ad hoc tree regression on boars from the population with a higher prevalence of severe TB confirmed that disease status was not the main factor explaining the observed variability in OS biomarkers. It was concluded that oxidative damage caused by TB is significant, but can only be detected in the absence of environmental variation in wild boar.This work was funded by the PAIDI Research Group RNM18 from Junta de Andalucía. ES was supported by the postdoctoral program (SFRH/BPD/96637/2013) of the Fundação para a Ciência ea Tecnologia, Portugal. We would like to thank the University of Aveiro (Department of Biology) and FCT/MEC for the financial support to CESAM RU (UID/AMB/50017) through national funds and, where applicable, co-financed by the FEDER, within the PT2020 Partnership Agreement.Peer reviewe

Microsatellite-based genotyping of MHC class II DRB1 gene in Iberian and Alpine ibex

In an analysis of a microsatellite locus (OLADRB1) linked to the MHC DRB1 gene of Iberian and Alpine ibex (Capra pyrenaica and Capra ibex), we detected strong linkage disequilibrium between both loci. The allele length polymorphism at OLADRB1 was unambiguously linked to a particular DRB1 allele. This allowed us to develop a DRB-STR matching method for both ibex species. Validation of the DRB-STR matching method was performed in 160 Iberian ibex from Spain and 98 Alpine ibex from Switzerland and Italy. This simple and relatively inexpensive protocol may find wide applications in a variety of research areas (e.g., mate choice, pathogen-driven selection) and in the biological conservation and management of the Western European ibex population

Modeling Biomass Production in Seasonal Wetlands Using MODIS NDVI Land Surface Phenology

Plant primary production is a key driver of several ecosystem functions in seasonal marshes, such as water purification and secondary production by wildlife and domestic animals. Knowledge of the spatio-temporal dynamics of biomass production is therefore essential for the management of resources—particularly in seasonal wetlands with variable flooding regimes. We propose a method to estimate standing aboveground plant biomass using NDVI Land Surface Phenology (LSP) derived from MODIS, which we calibrate and validate in the Doñana National Park’s marsh vegetation. Out of the different estimators tested, the Land Surface Phenology maximum NDVI (LSP-Maximum-NDVI) correlated best with ground-truth data of biomass production at five locations from 2001–2015 used to calibrate the models (R2 = 0.65). Estimators based on a single MODIS NDVI image performed worse (R2 ≤ 0.41). The LSP-Maximum-NDVI estimator was robust to environmental variation in precipitation and hydroperiod, and to spatial variation in the productivity and composition of the plant community. The determination of plant biomass using remote-sensing techniques, adequately supported by ground-truth data, may represent a key tool for the long-term monitoring and management of seasonal marsh ecosystems.We acknowledge support by the CSIC Open Access Publication Initiative through its Unit of Information Resources for Research (URICI).David Aragonés, Isabel Afán, Ricardo Díaz-Delgado and Diego García Díaz (EBD-LAST) provided support for remote-sensing and LSP analyses. Alfredo Chico, José Luis del Valle and Rocío Fernández Zamudio (ESPN, ICTS-RBD) provided logistic support and taxonomic expertise during the field work (validation dataset). Ernesto García and Cristina Pérez assisted with biomass harvesting and processing (calibration dataset). Gerrit Heil provided support in the project design. This study received funding from Ministerio de Medio Ambiente-Parque Nacional de Doñana, Consejeria de Medio Ambiente, Junta de Andalucia (1999–2000): RNM118 Junta de Andalucia (2003); the European Union’s Horizon 2020 Research and Innovation Program under grant agreement No. 641762 to ECOPOTENTIAL project; and the Spanish Ministry of Economy, Plan Estatal de I+D+i 2013–2016, under grant agreement CGL2016-81086-R to GRAZE project

Quantitative sexing (Q-sexing) technique for animal sex-determination based on X chromosome-linked loci: Empirical evidence from the Siberian tiger

Here we report a mammal sexing procedure based on the detection of quantitative differences between females and males in the X-linked loci (quantitative sexing, Q-sexing). This novel technique was validated using samples from Siberian tigers (Panthera tigris altaica) whose sexes were known. The Q-sexing technique relies on the fact that amplifications proceeding exclusively from the two X chromosomes in a female mammal should reach the threshold cycle (CT) in a real-time quantitative real time polymerase chain reaction (qPCR) assay sooner than amplifications from the single male X chromosome. Nevertheless, given that the amplification efficiency may vary between samples, results have to be calibrated to a marker that does not vary in copy number between the sexes (for example, an autosomal-linked locus). For this purpose we used quantitative real time polymerase chain reaction (RT qPCR) assays to quantify the amount of three specific Siberian tiger microsatellite markers (X-/Y- and autosomal-linked loci) in individual samples in order to determine the sex of an animal. A difference of one CT between the X and the autosome-linked loci was detected in males, but no such difference was present in female samples. The Q-sexing technique unambiguously separates female from male Siberian tigers. The future of RT qPCR is bright as technology is becoming ever more rapid, cost-effective, easier to use and capable of processing higher throughputs. Thus, we expect that our novel technique for animal sexing will have a wide applicability, although further studies are still needed to adapt it to other animal species using specific primers.Key words: Polymerase chain reaction (PCR), quantitative real time polymerase chain reaction (qPCR), quantitative sexing, Siberian tiger

Mismeasure of secondary sexual traits: An example with horn growth in the Iberian ibex

Monitoring programmes and studies focused on secondary sexual characters (SSCs) depend on the accuracy of measurements. However, methods of measurements of SSC, such as horns of ungulates, vary throughout the literature. Thus, the accuracy of horn growth measurements as proxies of true horn growth and the comparability of results inferred from different horn growth measurements may be questionable. We used the horns of Iberian ibex Capra pyrenaica to compare horn growth measurements and to analyse reliability with true horn growth. Our results reveal that measurements used in previous studies differed substantially from true horn growth and volume estimated as a barrel appeared as the best proxy of annular segments of horns in the Iberian ibex. Horn growth measurements are not necessarily mutually comparable, just as classical measurements are not necessarily representative of true horn growth. We discuss the wider implications of these results and suggest that biological processes linked to horns of ungulates should be reappraised using improved and accurate measurements because horn growth pattern is a key factor in sustainable management and conservation plans of ungulate species around the world. © 2012 The Authors. Journal of Zoology © 2012 The Zoological Society of London.Peer Reviewe