Archaean crustal evolution in West Africa: A new synthesis of the Archaean geology in Sierra Leone, Liberia, Guinea and Ivory Coast

A new synthesis of the geology and geochronology of the little-known Archaean rocks in Sierra Leone, Liberia, Guinea and Ivory Coast is presented in order to better understand the processes of Archaean crustal evolution in this region, and to attempt to interpret these data in the light of our current understanding of Archaean crustal evolution. In addition, this study seeks to identify those aspects of Archaean crustal evolution which are currently not known in this area and which need to become the subject of future studies, given the economic importance of this region in terms of the mineral deposits hosted in the Archaean rocks. These include greenstone-belt hosted iron ore, lode gold, chromite and columbite-tantalite and younger diamondiferous kimberlites intrusive into Archaean felsic gneisses. The new results show that this cratonic nucleus comprises of four main geological units: 1. The oldest crust is made up of 3.5-3.6 Ga TTG (tonalite-trondjemite-granodiorite) gneisses. These only outcrop in the east of the craton in Guinea but their presence is indicated elsewhere in the central part of the craton though xenocrystic zircon cores in younger rocks. 2. The major rock type found throughout the craton is 3.26-2.85 Ga TTG gneiss. In detail these magmas are thought to have formed in two episodes one between 3.05-3.26 Ga and the other between 2.85-2.96 Ga. The presence of inherited zircons in the younger suite indicate that this event represents the partial reworking of the older gneisses. 3.4 Ga eclogite xenoliths in kimberlite derived from the sub-continental lithospheric mantle are thought to be the restite after the partial melting of a basaltic protolith in the production of the TTG magmas. 3. Supracrustal rocks form linear belts infolded into the TTG gneisses and metamorphosed to amphibolite and granulite grade. They are of different sizes, contain a variety of lithological sequences and may be of several different ages. The larger supracrustal belts in Sierra Leone contain a thick basalt-komatiite sequence derived by the partial melting of two different mantle sources, unconformably overlain by a sedimentary formation. They are seen as an important resource for gold, iron-ore, chromite and columbite-tantalite. 4. A suite of late Archaean granitoids formed by the partial melting of the TTG gneisses in a craton wide deformation-metamorphic-partial melting event at 2800 +/- 20 Ma. This thermal event is thought to be responsible for the stabilisation of the craton. This new synthesis highlights major geological and geochronological similarities between the Archaean rocks of Sierra Leone, Liberia, Guinea and Ivory Coast and those in the Reguibat Shield in the northern part of the West African Craton suggesting that the two regions were once more closely related.UoD URS

What factors affect implementation of early rehabilitation into intensive care unit practice? A qualitative study with clinicians

Purpose To identify the barriers and enablers that influence clinicians' implementation of early rehabilitation in critical care. Materials and methods Qualitative study involving 26 multidisciplinary participants who were recruited using purposive sampling. Four focus groups were conducted using semistructured questions to explore attitudes, beliefs, and experiences. Data were transcribed verbatim and thematic analysis was performed. Results Six themes emerged, as follows: (1) the clinicians' expectations and knowledge (including rationale for rehabilitation, perceived benefits, and experience), (2) the evidence for and application of rehabilitation (including beliefs regarding when to intervene), (3) patient factors (including prognosis, sedation, delirium, cooperation, motivation, goals, and family), (4) safety considerations (including physiological stability and presence of devices or lines), (5) environmental influences (staffing, resources, equipment, time, and competing priorities), and (6) culture and teamwork. Key strategies identified to facilitate rehabilitation included addressing educational needs for all multidisciplinary team members, supporting junior nursing staff, and potential expansion of physiotherapy staffing hours to closer align with the 24-hour patient care model. Conclusions Key barriers to implementation of early rehabilitation in critical care are diverse and include both clinician- and health care system–related factors. Research targeted at bridging this evidence-practice gap is required to improve provision of rehabilitation. © 2016 Elsevier Inc

QEMSCAN® automated mineralogical analysis of PM2.5 and PM4: a preliminary study of underground coal mine dust from Poland and Slovenia

Determining the physical and chemical properties of airborne dusts in occupational settings is essential for assessing their potential toxicity as well as the effectiveness of respiratory protective equipment and dust mitigation measures. Here, we report the first successful QEMSCAN® automated mineralogical analysis of potentially toxic PM4 and PM2.5 dust from deep coal mines in Poland and Slovenia. QEMSCAN® was setup to automatically delimit 100,000 ‘particles’ per sample, based on average atomic number contrast, subject these to X-ray elemental analysis at points in a grid pattern (0.5 µm spacing), assign a mineral name to each point and then output the results as particle size, shape, mineralogy and mineral associations data and as mineral maps. The dusts were prepared as dispersions on a polyethylene sheet so that coal particles, with a slightly higher BSE signal, could be recognized from their substrate. Samples were analyzed repeatedly and in different orientations to determine the effects of sample geometry and topography. QEMSCAN® mineral identifications were manually checked using standard SEM X-ray elemental analysis. From a pilot study of Polish and Slovenian coal dust samples, PM4 and PM2.5 contain varying proportions of coal, quartz and other silicates, sulphides, sulphates, carbonates, oxides and other minerals, and notable concentrations of fly-ash particles. That some of these components may be toxic when inhaled, particularly the quartz and fly-ash, highlights the need for larger scale and wider ranging studies. The further potential of the newly developed QEMSCAN® methodology is discussed.European Union funding: 75420

Volcanic and geochemical evolution of the Teno massif, Tenerife, Canary Islands: some repercussions of giant landslides on ocean island magmatism

Large-scale, catastrophic mass wasting is a major process contributing to the dismantling of oceanic intraplate volcanoes. Recent studies, however, have highlighted a possible feedback relationship between flank collapse, or incipient instability, and subsequent episodes of structural rearrangement and/or renewed volcano growth. The Teno massif, located in northwestern Tenerife (Canary Islands), is a deeply eroded Miocene shield volcano that was built in four major eruptive phases punctuated by two lateral collapses, each removing >20–25 km3 of the volcano's north flank. In this paper, we use detailed field observations and petrological and geochemical data to evaluate possible links between large-scale landslides and subsequent volcanism/magmatism during Teno's evolution. Inspection of key stratigraphic sequences reveals that steep angular unconformities, relics of paleolandslide scars, are marked by polymict breccias. Near their base, these deposits typically include abundant juvenile pyroclastic material, otherwise scarce in the region. While some of Teno's most evolved, low-density magmas were produced just before flank collapses, early postlandslide lava sequences are characterized by anomalously high proportions of dense ankaramite flows, extremely rich in clinopyroxene and olivine crystals. A detailed sampling profile shows transitions from low-Mg # lavas relatively rich in SiO2 to lavas with low silica content and comparatively high Mg # after both landslides. Long-term variations in Zr/Nb, normative nepheline, and La/Lu are coupled but do not show a systematic correlation with stratigraphic boundaries. We propose that whereas loading of the growing precollapse volcano promoted magma stagnation and differentiation, the successive giant landslides modified the shallow volcano-tectonic stress field at Teno, resulting in widespread pyroclastic eruptions and shallow magma reservoir drainage. This rapid unloading of several tens of km3 of near-surface rocks appears to have upset magma differentiation processes, while facilitating the remobilization and tapping of denser ankaramite magmas that were stored in the uppermost mantle. Degrees of mantle melting coincidently reached a maximum in the short time interval between the two landslides and declined shortly after, probably reflecting intrinsic plume processes rather than a collapse-induced influence on mantle melting. Our study of Teno volcano bears implications for other oceanic volcanoes where short-term compositional variations may also directly relate to major flank collapse events

Forest responses to last‐millennium hydroclimate variability are governed by spatial variations in ecosystem sensitivity

Forecasts of future forest change are governed by ecosystem sensitivity to climate change, but ecosystem model projections are under‐constrained by data at multidecadal and longer timescales. Here, we quantify ecosystem sensitivity to centennial‐scale hydroclimate variability, by comparing dendroclimatic and pollen‐inferred reconstructions of drought, forest composition and biomass for the last millennium with five ecosystem model simulations. In both observations and models, spatial patterns in ecosystem responses to hydroclimate variability are strongly governed by ecosystem sensitivity rather than climate exposure. Ecosystem sensitivity was higher in models than observations and highest in simpler models. Model‐data comparisons suggest that interactions among biodiversity, demography and ecophysiology processes dampen the sensitivity of forest composition and biomass to climate variability and change. Integrating ecosystem models with observations from timescales extending beyond the instrumental record can better understand and forecast the mechanisms regulating forest sensitivity to climate variability in a complex and changing world

TRY plant trait database - enhanced coverage and open access

Plant traits-the morphological, anatomical, physiological, biochemical and phenological characteristics of plants-determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait-based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits-almost complete coverage for 'plant growth form'. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait-environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

Temporal and spatial field evaluations highlight the importance of the presymptomatic phase in supporting strong partial resistance in Triticum aestivum against Zymoseptoria tritici

peer-reviewedZymoseptoria tritici, the causal agent of septoria tritici blotch (STB), remains a significant threat to European wheat production with the continuous emergence of fungicide resistance in Z. tritici strains eroding the economic sustainability of wheat production systems. The life cycle of Z. tritici is characterized by a presymptomatic phase (latent period, LP) after which the pathogen switches to an aggressive necrotrophic stage, when lesions bearing pycnidia quickly manifest on the leaf. As minimal knowledge of the possible role of the LP in supporting STB resistance/susceptibility exists, the goal of this study was to investigate the spatial and temporal association between the LP and disease progression across three locations (Ireland – Waterford, Carlow; UK – Norwich) that represent commercially high, medium and low STB pressure environments. Completed over two seasons (2013–2015) with commercially grown cultivars, the potential of the LP in stalling STB epidemics was significant as identified with cv. Stigg, whose high level of partial resistance was characterized by a lengthened LP (c. 36 days) under the high disease pressure environment of Waterford. However, once the LP concluded it was followed by a rate of disease progression in cv. Stigg that was comparable to that observed in the more susceptible commercial varieties. Complementary analysis, via logistic modelling of intensive disease assessments made at Carlow and Waterford in 2015, further highlighted the value of a lengthened LP in supporting strong partial resistance against STB disease of wheat

Genome-wide analyses as part of the international FTLD-TDP whole-genome sequencing consortium reveals novel disease risk factors and increases support for immune dysfunction in FTLD

Frontotemporal lobar degeneration with neuronal inclusions of the TAR DNA-binding protein 43 (FTLD-TDP) represents the most common pathological subtype of FTLD. We established the international FTLD-TDP whole genome sequencing consortium to thoroughly characterize the known genetic causes of FTLD-TDP and identify novel genetic risk factors. Through the study of 1,131 unrelated Caucasian patients, we estimated that C9orf72 repeat expansions and GRN loss-of-function mutations account for 25.5% and 13.9% of FTLD-TDP patients, respectively. Mutations in TBK1 (1.5%) and other known FTLD genes (1.4%) were rare, and the disease in 57.7% of FTLD-TDP patients was unexplained by the known FTLD genes. To unravel the contribution of common genetic factors to the FTLD-TDP etiology in these patients, we conducted a two-stage association study comprising the analysis of whole-genome sequencing data from 517 FTLD-TDP patients and 838 controls, followed by targeted genotyping of the most associated genomic loci in 119 additional FTLD-TDP patients and 1653 controls. We identified three genome-wide significant FTLD-TDP risk loci: one new locus at chromosome 7q36 within the DPP6 gene led by rs118113626 (pvalue=4.82e-08, OR=2.12), and two known loci: UNC13A, led by rs1297319 (pvalue=1.27e-08, OR=1.50) and HLA-DQA2 led by rs17219281 (pvalue=3.22e-08, OR=1.98). While HLA represents a locus previously implicated in clinical FTLD and related neurodegenerative disorders, the association signal in our study is independent from previously reported associations. Through inspection of our whole genome sequence data for genes with an excess of rare loss-of-function variants in FTLD-TDP patients (n≥3) as compared to controls (n=0), we further discovered a possible role for genes functioning within the TBK1-related immune pathway (e.g. DHX58, TRIM21, IRF7) in the genetic etiology of FTLD-TDP. Together, our study based on the largest cohort of unrelated FTLD-TDP patients assembled to date provides a comprehensive view of the genetic landscape of FTLD-TDP, nominates novel FTLD-TDP risk loci, and strongly implicates the immune pathway in FTLD-TDP pathogenesis

Frontotemporal dementia and its subtypes: a genome-wide association study

SummaryBackground Frontotemporal dementia (FTD) is a complex disorder characterised by a broad range of clinical manifestations, differential pathological signatures, and genetic variability. Mutations in three genes—MAPT, GRN, and C9orf72—have been associated with FTD. We sought to identify novel genetic risk loci associated with the disorder. Methods We did a two-stage genome-wide association study on clinical FTD, analysing samples from 3526 patients with {FTD} and 9402 healthy controls. To reduce genetic heterogeneity, all participants were of European ancestry. In the discovery phase (samples from 2154 patients with {FTD} and 4308 controls), we did separate association analyses for each {FTD} subtype (behavioural variant FTD, semantic dementia, progressive non-fluent aphasia, and {FTD} overlapping with motor neuron disease FTD-MND), followed by a meta-analysis of the entire dataset. We carried forward replication of the novel suggestive loci in an independent sample series (samples from 1372 patients and 5094 controls) and then did joint phase and brain expression and methylation quantitative trait loci analyses for the associated (p<5 × 10−8) single-nucleotide polymorphisms. Findings We identified novel associations exceeding the genome-wide significance threshold (p<5 × 10−8). Combined (joint) analyses of discovery and replication phases showed genome-wide significant association at 6p21.3, \{HLA\} locus (immune system), for rs9268877 (p=1·05 × 10−8; odds ratio=1·204 95% \{CI\} 1·11–1·30), rs9268856 (p=5·51 × 10−9; 0·809 0·76–0·86) and rs1980493 (p value=1·57 × 10−8, 0·775 0·69–0·86) in the entire cohort. We also identified a potential novel locus at 11q14, encompassing RAB38/CTSC (the transcripts of which are related to lysosomal biology), for the behavioural \{FTD\} subtype for which joint analyses showed suggestive association for rs302668 (p=2·44 × 10−7; 0·814 0·71–0·92). Analysis of expression and methylation quantitative trait loci data suggested that these loci might affect expression and methylation in cis. Interpretation Our findings suggest that immune system processes (link to 6p21.3) and possibly lysosomal and autophagy pathways (link to 11q14) are potentially involved in FTD. Our findings need to be replicated to better define the association of the newly identified loci with disease and to shed light on the pathomechanisms contributing to FTD. Funding The National Institute of Neurological Disorders and Stroke and National Institute on Aging, the Wellcome/MRC Centre on Parkinson's disease, Alzheimer's Research UK, and Texas Tech University Health Sciences Center