Material Decomposition in Spectral CT using deep learning: A Sim2Real transfer approach

The state-of-the art for solving the nonlinear material decomposition problem in spectral computed tomography is based on variational methods, but these are computationally slow and critically depend on the particular choice of the regularization functional. Convolutional neural networks have been proposed for addressing these issues. However, learning algorithms require large amounts of experimental data sets. We propose a deep learning strategy for solving the material decomposition problem based on a U-Net architecture and a Sim2Real transfer learning approach where the knowledge that we learn from synthetic data is transferred to a real-world scenario. In order for this approach to work, synthetic data must be realistic and representative of the experimental data. For this purpose, numerical phantoms are generated from human CT volumes of the KiTS19 Challenge dataset, segmented into specific materials (soft tissue and bone). These volumes are projected into sinogram space in order to simulate photon counting data, taking into account the energy response of the scanner. We compared projection- and image-based decomposition approaches where the network is trained to decompose the materials either in the projection or in the image domain. The proposed Sim2Real transfer strategies are compared to a regularized Gauss-Newton (RGN) method on synthetic data, experimental phantom data and human thorax data

Data Driven Cone Beam CT Motion Management for Radiotherapy Application

The ability to identify respiratory motion is crucial during radiation therapy treatment. In our study we introduced a novel data driven method based on principal component analysis (PCA) to extract a signal related to respiratory motion from cone beam CT projection data. Projection data acquired on cone beam CT devices normally has two motion component information within it, (1) respiratory induced motion and (2) detector rotational induced motion. Our novel approach for extracting a respiratory induced motion signal from projection data was based on computing PCA for different sections of the data set independently, and introducing a technique of combining the extracted signal from each section in a manner to represent the respiratory signal from the entire data set. We tested our method using simulation data set from XCAT software and a real patient data set. The respiratory signal extracted with the XCAT simulation yielded comparable result when compared to the ground truth respiratory signal. Initial results for the real patient data set are encouraging but show need for further refinements

Djelovanje karboksilnih kiselina na crveno obojenje cvjetova žutinice

Eight carboxylic acids were fed at 1-10000 pM to the flower pastes from fresh dyer’s saffron (Carthamus tinctorius L.) capitula and their effects on the red colouration investigated. Glyoxyllic acid, glycolic acid, oxaloacetic acid, 2-oxoglutaric acid and gluconic acid were found to be positive stimulators for the reaction, while succinic acid, malic acid and citric acid inhibited the colour change.Svojim ranijim istraživanjima autori su pokazali da usitnjeni cvjetovi žutinice (Carthamus tinctorius L.) poprime crvenu boju ako na njih djeluju otopine aminokiselina. Učinkovitost pojedine aminokiseline ovisi o tipu: kisele amino- kiseline bile su najučinkovitije, neutralne nešto manje, one s aromatičnim skupinama ili skupinama sa sumporom još manje, dok su bazične aminokiseline bile najmanje učinkovite. Za objašnjenje ovih rezultata bilo je potrebno da se ustanove još drugi metaboliti koji biokatalitički utječu na promjenu boje cvjetova. U ovom prilogu autori objavljuju podatke o promjenama boje nakon primjene karboksilnih kiselina. U tu svrhu istražili su djelovanje osam karboksilnih kiselina u koncentracijama od 1 - 10000 pM na kašu od zdrobljenih cvjetova žutinice (Carthamus tinctorius L.). Postignuti rezultati su pokazali da glioksilna, glikolna, oksalooc- tena, 2-oksoglutarna i glukonska kiselina pospješuju reakciju stvaranja crvenog bojila, dok jantarna, jabučna i limunska kiselina tu reakciju inhibiraju. U radu se navode točni podaci o materijalu, metodama rada i rezultatima koji su prikazani u preglednoj tabeli. Rezultate autori kratko komentiraju uz razmišljanja da bi kemijske strukture karboksilnih kiselina mogle biti uže povezane s procesima promjene bojila, iako je sam mehanizam reakcije zasad još nepoznat

Constraining nucleon effective masses with flow and stopping observables from the Sπ\piRIT experiment

Properties of the nuclear equation of state (EoS) can be probed by measuring the dynamical properties of nucleus-nucleus collisions. In this study, we present the directed flow ($v_1$), elliptic flow ($v_2$) and stopping (VarXZ) measured in fixed target Sn + Sn collisions at 270 AMeV with the S$\pi$RIT Time Projection Chamber. We perform Bayesian analyses in which EoS parameters are varied simultaneously within the Improved Quantum Molecular Dynamics-Skyrme (ImQMD-Sky) transport code to obtain a multivariate correlated constraint. The varied parameters include symmetry energy, $S_0$, and slope of the symmetry energy, $L$, at saturation density, isoscalar effective mass, $m_{s}^*/m_{N}$, isovector effective mass, $m_{v}^{*}/m_{N}$ and the in-medium cross-section enhancement factor $\eta$. We find that the flow and VarXZ observables are sensitive to the splitting of proton and neutron effective masses and the in-medium cross-section. Comparisons of ImQMD-Sky predictions to the S$\pi$RIT data suggest a narrow range of preferred values for $m_{s}^*/m_{N}$, $m_{v}^{*}/m_{N}$ and $\eta$

RLIP76, a Glutathione-Conjugate Transporter, Plays a Major Role in the Pathogenesis of Metabolic Syndrome

PURPOSE: Characteristic hypoglycemia, hypotriglyceridemia, hypocholesterolemia, lower body mass, and fat as well as pronounced insulin-sensitivity of RLIP76⁻/⁻ mice suggested to us the possibility that elevation of RLIP76 in response to stress could itself elicit metabolic syndrome (MSy). Indeed, if it were required for MSy, drugs used to treat MSy should have no effect on RLIP76⁻/⁻ mice. RESEARCH DESIGN AND METHODS: Blood glucose (BG) and lipid measurements were performed in RLIP76⁺/⁺ and RLIP76⁻/⁻ mice, using Ascensia Elite Glucometer® for glucose and ID Labs kits for cholesterol and triglycerides assays. The ultimate effectors of gluconeogenesis are the three enzymes: PEPCK, F-1,6-BPase, and G6Pase, and their expression is regulated by PPARγ and AMPK. The activity of these enzymes was tested by protocols standardized by us. Expressions of RLIP76, PPARα, PPARγ, HMGCR, pJNK, pAkt, and AMPK were performed by Western-blot and tissue staining. RESULTS: The concomitant activation of AMPK and PPARγ by inhibiting transport activity of RLIP76, despite inhibited activity of key glucocorticoid-regulated hepatic gluconeogenic enzymes like PEPCK, G6Pase and F-1,6-BP in RLIP76⁻/⁻ mice, is a salient finding of our studies. The decrease in RLIP76 protein expression by rosiglitazone and metformin is associated with an up-regulation of PPARγ and AMPK. CONCLUSIONS/SIGNIFICANCE: All four drugs, rosiglitazone, metformin, gemfibrozil and atorvastatin failed to affect glucose and lipid metabolism in RLIP76⁻/⁻ mice. Studies confirmed a model in which RLIP76 plays a central role in the pathogenesis of MSy and RLIP76 loss causes profound and global alterations of MSy signaling functions. RLIP76 is a novel target for single-molecule therapeutics for metabolic syndrome

Isoscaling in central Sn+Sn collisions at 270 MeV/u

Experimental information on fragment emissions is important in understanding the dynamics of nuclear collisions and in the development of transport model simulating heavy-ion collisions. The composition of complex fragments emitted in the heavy-ion collisions can be explained by statistical models, which assume that thermal equilibrium is achieved at collision energies below 100 MeV/u. Our new experimental data together with theoretical analyses for light particles from Sn+Sn collisions at 270 MeV/u, suggest that the hypothesis of thermal equilibrium breaks down for particles emitted with high transfer momentum. To inspect the system's properties in such limit, the scaling features of the yield ratios of particles from two systems, a neutron-rich system of ${}^{132}\mathrm{Sn}+{}^{124}\mathrm{Sn}$ and a nearly symmetric system of ${}^{108}\mathrm{Sn}+{}^{112}\mathrm{Sn}$, are examined in the framework of the statistical multifragmentation model and the antisymmetrized molecular dynamics model. The isoscaling from low energy particles agree with both models. However the observed breakdown of isoscaling for particles with high transverse momentum cannot be explained by the antisymmetrized molecular dynamics model

2012 Activity Report of the Regional Research Programme on Hadrontherapy for the ETOILE Center

2012 is the penultimate year of financial support by the CPER 2007-2013 for ETOILE's research program, sustained by the PRRH at the University Claude Bernard. As with each edition we make the annual review of the research in this group, so active for over 12 years now. Over the difficulties in the decision-making process for the implementation of the ETOILE Center, towards which all our efforts are focussed, some "themes" (work packages) were strengthened, others have progressed, or have been dropped. This is the case of the eighth theme (technological developments), centered around the technology for rotative beam distribution heads (gantries) and, after being synchronized with the developments of ULICE's WP6, remained so by ceasing its activities, coinciding also with the retirement of its historic leader at IPNL, Marcel Bajard. Topic number 5 ("In silico simulations") has suffered the departure of its leader, Benjamin Ribba, although the work has still been provided by Branka Bernard, a former postdoctoral fellow in Lyon Sud, and now back home in Croatia, still in contract with UCBL for the ULICE project. Aside from these two issues (and the fact that the theme "Medico-economical simulations" is now directly linked to the first one ("Medical Project"), the rest of the teams are growing, as evidenced by the publication statistics at the beginning of this report. This is obviously due to the financial support of our always faithful regional institutions, but also to the synergy that the previous years, the European projects, the arrival of the PRIMES LabEx, and the national France Hadron infrastructure have managed to impulse. The Rhone-Alpes hadron team, which naturally includes the researchers of LPC at Clermont, should also see its influence result in a strong presence in France Hadron's regional node, which is being organized. The future of this regional research is not yet fully guaranteed, especially in the still uncertain context of ETOILE, but the tracks are beginning to emerge to allow past and present efforts translate into a long future that we all want to see established. Each of the researchers in PRRH is aware that 2013 will be (and already is) the year of great challenge : for ETOILE, for the PRRH, for hadron therapy in France, for French hadrontherapy in Europe (after the opening and beginning of treatments in the German [HIT Heidelberg, Marburg], Italian [CNAO, Pavia] and Austrian [MedAustron, Wien Neuerstadt]) centers. Let us meet again in early 2014 for a comprehensive review of the past and a perspective for the future ..

A stable heavier group 14 analogue of vinylidene

Vinylidene (H2C=C) is a member of the family of compounds of composition CH (and isomeric with ethyne, HC≡CH), but it has been observed only transiently—with a lifetime in the region of 0.1 ns. Indeed, no simple (non-base-stabilized) compounds of the type R2E=E have been characterized structurally for any of the group 14 elements. Here we show that by employing the bulky and strongly electron-donating boryl ligand (HCDippN)2B (Dipp, 2,6-iPr2C6H3), a simple monomeric digermavinylidene compound, (boryl)2GeGe, can be synthesized and is stable at room temperature. Both its formation via the two-electron chemical oxidation of the symmetrical Ge0 compound K2[(boryl)GeGe(boryl)] and its subsequent reaction chemistry (for example, with H2), are consistent with a high substituent lability and the accessibility of both 1,1- and 1,2-substitution patterns. Structural and computational studies of [(HCDippN)2B]2GeGe reveal a weak Ge–Ge double bond—the π component of which contributes to the highest occupied molecular orbital (HOMO)—with a Ge-centred lone pair as the HOMO–1