Evaluation of Five Conductivity Meters

Prices of conductivity meters vary widely. Here we report the response time, stability, and linearity of five meters. ConclusionsThe Hanna HI 98188 and the YSI Pro 30 are the two most expensive meters and they were the most stable. They were within 5% of the actual conductivity.The Blue Pen was consistently closer to the actual conductivity than the other two Hanna meters and at only $20 it is a cost effective meter

Improved Underwater Excitation-Emission Matrix Fluorometer

A compact, high-resolution, two-dimensional excitation-emission matrix fluorometer (EEMF) has been designed and built specifically for use in identifying and measuring the concentrations of organic compounds, including polluting hydrocarbons, in natural underwater settings. Heretofore, most EEMFs have been designed and built for installation in laboratories, where they are used to analyze the contents of samples collected in the field and brought to the laboratories. Because the present EEMF can be operated in the field, it is better suited to measurement of spatially and temporally varying concentrations of substances of interest. In excitation-emission matrix (EEM) fluorometry, fluorescence is excited by irradiating a sample at one or more wavelengths, and the fluorescent emission from the sample is measured at multiple wavelengths. When excitation is provided at only one wavelength, the technique is termed one-dimensional (1D) EEM fluorometry because the resulting matrix of fluorescence emission data (the EEM) contains only one row or column. When excitation is provided at multiple wavelengths, the technique is termed two-dimensional (2D) EEM fluorometry because the resulting EEM contains multiple rows and columns. EEM fluorometry - especially the 2D variety - is well established as a means of simultaneously detecting numerous dissolved and particulate compounds in water. Each compound or pool of compounds has a unique spectral fluorescence signature, and each EEM is rich in information content, in that it can contain multiple fluorescence signatures. By use of deconvolution and/or other mixture-analyses techniques, it is often possible to isolate the spectral signature of compounds of interest, even when their fluorescence spectra overlap. What distinguishes the present 2D EEMF over prior laboratory-type 2D EEMFs are several improvements in packaging (including a sealed housing) and other aspects of design that render it suitable for use in natural underwater settings. In addition, the design of the present 2D EEMF incorporates improvements over the one prior commercial underwater 2D EEMF, developed in 1994 by the same company that developed the present one. Notable advanced features of the present EEMF include the following: 1) High sensitivity and spectral resolution are achieved by use of an off-the-shelf grating spectrometer equipped with a sensor in the form of a commercial astronomical- grade 256 532-pixel charge-coupled-device (CCD) array. 2) All of the power supply, timing, control, and readout circuits for the illumination source and the CCD, ancillary environmental monitoring sensors, and circuitry for controlling a shutter or filter motor are custom-designed and mounted compactly on three circuit boards below a fourth circuit board that holds the CCD (see figure). 3) The compactness of the grating spectrometer, CCD, and circuit assembly makes it possible to fit the entire instrument into a compact package that is intended to be maneuverable underwater by one person. 4) In mass production, the cost of the complete instrument would be relatively low - estimated at approximately $30,000 at 2005 prices

Core handling and processing for the WAIS Divide ice-core project

On 1 December 2011 the West Antarctic Ice Sheet (WAIS) Divide ice-core project reached its final depth of 3405 m. The WAIS Divide ice core is not only the longest US ice core to date, but is also the highest-quality deep ice core, including ice from the brittle ice zone, that the US has ever recovered. The methods used at WAIS Divide to handle and log the drilled ice, the procedures used to safely retrograde the ice back to the US National Ice Core Laboratory (NICL) and the methods used to process and sample the ice at the NICL are described and discussed

Core handling and processing for the WAIS Divide ice-core project

On 1 December 2011 the West Antarctic Ice Sheet (WAIS) Divide ice-core project reached its final depth of 3405 m. The WAIS Divide ice core is not only the longest US ice core to date, but is also the highest-quality deep ice core, including ice from the brittle ice zone, that the US has ever recovered. The methods used at WAIS Divide to handle and log the drilled ice, the procedures used to safely retrograde the ice back to the US National Ice Core Laboratory (NICL) and the methods used to process and sample the ice at the NICL are described and discussed

A global review of marine recreational spearfishing

24 pages, 5 figures, 2 tables, supplementary information https://doi.org/10.1007/s11160-023-09790-7.-- Data availability: The full list of papers used for the systematic review is available as a supplementary tableRecreational spearfishing is a fishing method that occurs globally, yet receives considerably less attention in the scientific literature relative to other recreational fishing methods, such as angling. Lack of scientific information on spearfishing may negatively affect the development and management of marine recreational fisheries. We conducted a systematic review of 102 peer-reviewed papers published between 1967 and 2022 pertaining to marine recreational spearfishing. Based on this literature review, we provide an overview of key insights across social, economic, and ecological dimensions of marine recreational spearfishing. While spearfishers represent less than 5% of marine recreational fishers, the participants are younger and may differ from recreational anglers in their motivations, with suggestions of increased well-being generated from a close connection with the sea during underwater fishing. Recreational spearfishers mostly target species of moderate to high levels of vulnerability that are mid to high trophic level carnivores. Though spearfishers can deliberately target larger individuals of exploited populations, this is not a generalizable pattern. Despite a growing body of research on the ecological impacts of marine recreational spearfishing, there is limited knowledge of these effects and their mechanisms across biological levels of organization (e.g., individual, population, community and ecosystem) compared with those of other fishing methods. Recreational spearfishers can contribute to advances in marine ecological knowledge, and inclusive participatory management could represent a key step towards transformative sustainable development of marine recreational spearfishing. Throughout the review, we identify gaps in the research and areas where future research is needed to better inform the socio-economic importance, ecosystem impacts and future management of marine recreational spearfishingVS was supported by a “Juan de la Cierva Incorporación” (IJC2018-035389-I), and he is now supported by a “Ramón y Cajal” research fellowships (RYC2021-033065-I) granted by the Spanish Ministry of Science and Innovation. SV and PP are supported by the Xunta de Galicia (RECREGES I and II projects under Grants ED481B2014/034-0 and ED481B2018/017), Grupo de Referencia Competitiva GI-2060 AEMI, under Grant ED431C2019/11), and Fundación Biodiversidad, Ministerio para la Transición Ecológica y el Reto Demográfico, Gobierno de España (SICORE and GT PMR projects). VJG received a postdoctoral grant (#2017/22273-0) from São Paulo Research Foundation (FAPESP). MR would like to acknowledge Portuguese national funds from FCT—Foundation for Science and Technology through projects UIDB/04326/2020, UIDP/04326/2020 and LA/P/0101/2020. MR would also like to acknowledge FCT funding through a postdoctoral grant (SFRH/BPD/116307/2016). JACCN thanks to Meros do Brasil Project sponsored by Petrobras. FJH is supported by a Sȇr Cymru European Regional Development Fund Fellowship (80761-SU-135). RA was supported by the German Federal Ministry of Education and Research (Grants 01LC1826E and 033W046A). ML is supported by the Agencia Nacional de Investigación e Innovación (ANII, POS_EXT_2020_1_165362). This work acknowledges the ‘Severo Ochoa Centre of Excellence’ accreditation (CEX2019-000928-S). [...] Open Access funding provided thanks to the CRUE-CSIC agreement with Springer NaturePeer reviewe

Hyperspectral temperature and salt dependencies of absorption by water and heavy water in the 400-750 nm spectral range

The temperature and salt dependencies of absorption by liquid water (H₂O) and heavy water (D₂O) were determined using a hyperspectral absorption and attenuation meter (WET Labs, AC-S). Sodium chloride (NaCl) was used as a proxy for seawater salts. There was no significant temperature (ψₜ) or salt (ψₛ) dependency of absorption at wavelengths 550 nm, ψₜ exhibited peaks at ~604, 662, and 740 nm. A small negative trough in ψₛ occurred at ~590 nm, followed by a small positive peak ~620 nm, a larger negative trough at ~720 nm, and a strong positive peak at ~755 nm. The salt dependency of absorption by heavy water, ψₛᴴ, exhibited a negative power-law shape with very low ψₛᴴ, at wavelengths >550 nm. Our experiments with NaCl, clean open ocean seawater, and artificial seawater support the hypothesis that salts modify the absorption spectra of seawater by modifying the molecular matrix and vibrations of pure water

Clinical Practice Recommendations on Genetic Testing of CYP2C9 and VKORC1 Variants in Warfarin Therapy

Objective: To systematically review evidence on genetic variants influencing outcomes during warfarin therapy and provide practice recommendations addressing the key questions: (1) Should genetic testing be performed in patients with an indication for warfarin therapy to improve achievement of stable anticoagulation and reduce adverse effects? (2) Are there subgroups of patients who may benefit more from genetic testing compared with others? (3) How should patients with an indication for warfarin therapy be managed based on their genetic test results? Methods: A systematic literature search was performed for VKORC1 and CYP2C9 and their association with warfarin therapy. Evidence was critically appraised, and clinical practice recommendations were developed based on expert group consensus. Results: Testing of VKORC1 (-1639G\u3eA), CYP2C92, and CYP2C93 should be considered for all patients, including pediatric patients, within the first 2 weeks of therapy or after a bleeding event. Testing for CYP2C95, 6, 8, or 11 and CYP4F2 (V433M) is currently not recommended. Testing should also be considered for all patients who are at increased risk of bleeding complications, who consistently show out-of-range international normalized ratios, or suffer adverse events while receiving warfarin. Genotyping results should be interpreted using a pharmacogenetic dosing algorithm to estimate the required dose. Significance: This review provides the latest update on genetic markers for warfarin therapy, clinical practice recommendations as a basis for informed decision making regarding the use of genotype-guided dosing in patients with an indication for warfarin therapy, and identifies knowledge gaps to guide future research.

Sorghum Genome Sequencing by Methylation Filtration

Sorghum bicolor is a close relative of maize and is a staple crop in Africa and much of the developing world because of its superior tolerance of arid growth conditions. We have generated sequence from the hypomethylated portion of the sorghum genome by applying methylation filtration (MF) technology. The evidence suggests that 96% of the genes have been sequence tagged, with an average coverage of 65% across their length. Remarkably, this level of gene discovery was accomplished after generating a raw coverage of less than 300 megabases of the 735-megabase genome. MF preferentially captures exons and introns, promoters, microRNAs, and simple sequence repeats, and minimizes interspersed repeats, thus providing a robust view of the functional parts of the genome. The sorghum MF sequence set is beneficial to research on sorghum and is also a powerful resource for comparative genomics among the grasses and across the entire plant kingdom. Thousands of hypothetical gene predictions in rice and Arabidopsis are supported by the sorghum dataset, and genomic similarities highlight evolutionarily conserved regions that will lead to a better understanding of rice and Arabidopsis