116 research outputs found

    Sometimes hard to swallow: Attempted feeding on a porcupinefish results in death of both predator and prey

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    Predator-prey relationships are critical components of population dynamics across all ecosystems. Interactions between predators and dangerous prey are especially likely to result in a co-evolutionary arms race. To avoid predation, porcupinefishes (Diodontidae) present a suite of physical and chemical defences, including spines, inflation, and the potent neurotoxin, tetrodotoxin, which is concentrated in the internal organs. A failed predation attempt is described here on a longspined porcupinefish, Diodon holocanthus, by a benthopelagic predator, Carangoides fulvoguttatus, resulting in the death of both the predator and the prey.

    Tosanoides aphrodite, a new species from mesophotic coral ecosystems of St. Paul’s Rocks, Mid Atlantic Ridge (Perciformes, Serranidae, Anthiadinae)

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    During a recent expedition to St. Paul’s Rocks, Atlantic Ocean, a distinctive and previously unknown species of Anthiadinae was collected at a depth of 120 m. A genetic analysis indicated the undescribed species is a member of the genus Tosanoides, which was only known to occur in the Pacific Ocean. This new taxon is distinguishable from all other Tosanoides species by the following combination of characters: soft dorsal fin rays 15–16; anal fin rays 9; ventral scale rows 9–10; last dorsal spine the longest (instead first through fourth). Here Tosanoides aphrodite sp. n. is described and illustrated, only known from St. Paul’s Rocks

    A New Species of Chromis (Teleostei: Pomacentridae) from Mesophotic Coral Ecosystems of Rapa Nui (Easter Island) and Salas y Gomez, Chile

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    A new species of Chromis (Teleostei: Pomacentridae) is described from three specimens collected at 90 m depth in a mesophotic coral ecosystem at Rapa Nui, Chile. Chromis mamatapara, new species, can be distinguished from its congeners by the following combination of characters: dorsal-fin rays XIV,13–14; pectoral-fin rays 18–19, third from top of fin longest; tubed lateral-line scales 18; total gill rakers on first arch 30–32; vertebrae 11þ15; and by coloration of living specimens, especially the presence of a single, pronounced, white spot, roughly the same diameter as the orbit, located where the posterior base of the dorsal fin intersects the caudal peduncle. The most similar DNA barcode (mitochondrial COI gene), among those available, is Chromis tingting from Japan (3.5% uncorrected divergence); however, C. mamatapara, new species, also superficially resembles other species for which sequences are unavailable for comparisons, including C. okamurai from Japan and C. struhsakeri from Hawaii. Due to the high geographic isolation and consequently high endemism in the Rapa Nui region, we believe that C. mamatapara, new species, is endemic to mesophotic ecosystems of Rapa Nui, Isla Salas y Gomez, and nearby seamounts, a discovery that contributes to the high endemism of the region and thus the need for conservation efforts

    Haplotype Network Branch Diversity, a New Metric Combining Genetic and Topological Diversity to Compare the Complexity of Haplotype Networks

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    A common way of illustrating phylogeographic results is through the use of haplotype networks. While these networks help to visualize relationships between individuals, populations, and species, evolutionary studies often only quantitatively analyze genetic diversity among haplotypes and ignore other network properties. Here, we present a new metric, haplotype network branch diversity (HBd), as an easy way to quantifiably compare haplotype network complexity. Our metric builds off the logic of combining genetic and topological diversity to estimate complexity previously used by the published metric haplotype network diversity (HNd). However, unlike HNd which uses a combination of network features to produce complexity values that cannot be defined in probabilistic terms, thereby obscuring the values’ implication for a sampled population, HBd uses frequencies of haplotype classes to incorporate topological information of networks, keeping the focus on the population and providing easy-to-interpret probabilistic values for randomly sampled individuals. The goal of this study is to introduce this more intuitive metric and provide an R script that allows researchers to calculate diversity and complexity indices from haplotype networks. A group of datasets, generated manually (model dataset) and based on published data (empirical dataset), were used to illustrate the behavior of HBd and both of its terms, haplotype diversity, and a new index called branch diversity. Results followed a predicted trend in both model and empirical datasets, from low metric values in simple networks to high values in complex networks. In short, the new combined metric joins genetic and topological diversity of haplotype networks, into a single complexity value. Based on our analysis, we recommend the use of HBd, as it makes direct comparisons of network complexity straightforward and provides probabilistic values that can readily discriminate situations that are difficult to resolve with available metrics

    Harvest of endangered marine invertebrates in a priority area for conservation in Brazil

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    The harvesting of marine organisms for aquarium and ornamental art crafts is a very common and widespread activity, threatening a number of coral reef species. The goal of this manuscript is to report the intensive harvesting of two marine invertebrate species, the starfish Oreaster reticulatus and the gorgonian Phyllogorgia dilatata, in reef environments of a national priority area for the creation of a Marine Protected Area (MPA) in the Espírito Santo State, central coast of Brazil. These species were present on the 2003 Brazilian Red List of Endangered species as threatened of extinction, but P. dilatata was removed from the most recent 2014 Brazilian Red List, while O. reticulatus is currently considered vulnerable. Neither species have been assessed by IUCN. The harvest of these invertebrates was registered in 17% of the 51 days of monitoring (ten expeditions between March 2005 and February 2006), with catches of up to 24 starfishes and 1000 gorgonians in a single day. Starfishes used to be sold to local traders for US0.50each,andeachgorgonianforUS 0.50 each, and each gorgonian for US 0.15. This starfish is already in decline on a regional scale, and the actual harvesting rate of the gorgonian could lead to the extinction of the local population in about 17 years of exploitation. Due to the ecological importance of these two endangered species, their harvest threatens the entire local rocky reef ecosystem. Further ecological and fisheries studies on these species should be conducted, and the definition and creation of the MPA could help to manage all the unsustainable activities conducted and expected in the region

    Determinants of reef fish assemblages in tropical Oceanic islands

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    Diversity patterns are determined by biogeographic, energetic, and anthropogenic factors, yet few studies have combined them into a large‐scale framework in order to decouple and compare their relative effects on fish faunas. Using an empirical dataset derived from 1527 underwater visual censuses (UVC) at 18 oceanic islands (five different marine provinces), we determined the relative influence of such factors on reef fish species richness, functional dispersion, density and biomass estimated from each UVC unit. Species richness presented low variation but was high at large island sites. High functional dispersion, density, and biomass were found at islands with large local species pool and distance from nearest reef. Primary productivity positively affected fish richness, density and biomass confirming that more productive areas support larger populations, and higher biomass and richness on oceanic islands. Islands densely populated by humans had lower fish species richness and biomass reflecting anthropogenic effects. Species richness, functional dispersion, and biomass were positively related to distance from the mainland. Overall, species richness and fish density were mainly influenced by biogeographical and energetic factors, whereas functional dispersion and biomass were strongly influenced by anthropogenic factors. Our results extend previous hypotheses for different assemblage metrics estimated from empirical data and confirm the negative impact of humans on fish assemblages, highlighting the need for conservation of oceanic islands.UCR::Vicerrectoría de Investigación::Unidades de Investigación::Ciencias Básicas::Centro de Investigación en Ciencias del Mar y Limnología (CIMAR

    The genomes of two key bumblebee species with primitive eusocial organization

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    Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats. Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits. Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation

    Nucleoside/nucleotide reverse transcriptase inhibitor sparing regimen with once daily integrase inhibitor plus boosted darunavir is non-inferior to standard of care in virologically-suppressed children and adolescents living with HIV – Week 48 results of the randomised SMILE Penta-17-ANRS 152 clinical trial

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