A Variety Metric Accounting for Unbalanced Idea Space Distributions

AbstractProving the effectiveness of an idea generation method is key to its acceptance in an industrial and academic environment. This necessitates the development of a set of widely accepted metrics covering the different aspects on which idea generation methods can be characterized. This paper gives an overview of the existing metrics, and demonstrates a number of shortcomings in the variety metric, such as not accounting for the fairness of the distribution of ideas over nodes on an abstraction level. A level-based, correctly normalized variety metric, based on the Shannon entropy, is proposed which is shown to resolve the identified issues

High-latitude forcing of diatom productivity in the southern Agulhas Plateauduring the past 350kyr

The hydrography of the Indian-Atlantic Ocean gateway has been connected to high-latitude climate dynamics by oceanic and atmospheric teleconnections on orbital and suborbital timescales. A wealth of sedimentary records aiming at reconstructing the late Pleistocene paleoceanography around the southern African continent has been devoted to understanding these linkages. Most of the records are, however, clustered close to the southern South African tip, with comparatively less attention devoted to areas under the direct influence of frontal zones of the Southern Ocean/South Atlantic. Here we present data of the composition and concentration of the diatom assemblage together with bulk biogenic content and the alkenone-based sea surface temperature (SST) variations for the past 350?kyr in the marine sediment core MD02-2588 (approximately 41°S, 26°E) recovered from the southern Agulhas Plateau. Variations in biosiliceous productivity show a varying degree of coupling with Southern Hemisphere paleoclimate records following a glacial-interglacial cyclicity. Ecologically well-constrained groups of diatoms record the glacial-interglacial changes in water masses dynamics, nutrient availability, and stratification of the upper ocean. The good match between the glacial maxima of total diatoms concentration, Chaetoceros spores abundance, and opal content with the maximum seasonal cover of Antarctic ice and the atmospheric dust records points to a dominant Southern Hemisphere forcing of diatom production. Suborbital variability of SST suggests rapid latitudinal migrations of the Subtropical Front and associated water masses over the southern Agulhas Plateau, following millennial contractions and expansions of the subtropical gyres. Warmings of the upper ocean over site MD02-2588 during terminations IV to I occurred earlier than that in the Antarctic Vostok, which is indicative of a Northern Hemisphere lead. Our multiparameter reconstruction highlights how high-latitude atmospheric and hydrographic processes modulated orbital highs and lows in primary production and SST as triggered by northward transport of Si, eolian dust input, and latitudinal migrations of frontal zones

Identification of Genomic Regions Associated with Phenotypic Variation between Dog Breeds using Selection Mapping

Peer reviewe

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century

The molecular basis of monogenic hypercholesterolemia

One copy microfiche.Thesis (M.M.S. (Human Genetics)) -- University of Stellenbosch, 1994.Full text to be digitised and attached to bibliographic record

Analysis of the genetic contribution to the risk of cadiovascular disease in monogenic hypercholesterolemia

Dissertation (Ph. D.) -- University of Stellenbosch, 1996.One copy microfiche.Full text to be digitised and attached to bibliographic record

Refined Metrics for Measuring Novelty in Ideation

The idea generation phase is considered an important, although fuzzy, step in product development. Supporting methods and tools have been developed. However, their effectiveness has only been studied in sporadic attempts, and the few controlled experiments only share little similarity in conditions. Measuring the effectiveness of idea generation methods and tools requires replicable evaluation methods and suitable metrics, which have recently been developed. This paper proposes a refinement of an existing novelty metric used in these evaluation methods. Furthermore, it is proposed to incorporate the variation on novelty scores in the analysis of the effectiveness of idea generation tools. Based on the analysis of the results from controlled experiments, it is shown that these refinements allow for more fine-grained analyses of the effectiveness of an idea generation method.status: publishe