Limb patterning: from signaling gradients to molecular oscillations

The developing forelimb is patterned along the proximal-distal and anterior-posterior axes by opposing gradients of retinoic acid and fibroblast growth factors and by graded sonic hedgehog signaling, respectively. However, how coordinated patterning along both axes is accomplished with temporal precision remains unknown. The limb molecular oscillator hairy2 was recently shown to be a direct readout of the combined signaling activities of retinoic acid, fibroblast growth factor and sonic hedgehog in the limb mesenchyme. Herein, an integrated time-space model is presented to conciliate the progress zone and two-signal models for limb patterning. We propose that the limb clock may allow temporal information to be decoded into positional information when the distance between opposing signaling gradients is no longer sufficient to provide distinct cell fate specification.C.J.S. was supported by Fundacao para a Ciencia e a Tecnologia, Portugal (grant SFRH/BPD/89493/2012); R.P.A. is funded by Ciencia 2007 Program Contract (Portuguese Government) and Programa Operacional Regional do Norte (ON.2) NORTE-07-0124-FEDER-000017. This work was supported by research grants from Institute for Biotechnology and Bioengineering/Centro de Biomedicina Molecular e Estrutural, LA (to I.P.), by the national Portuguese funding through Fundacao para a Ciencia e a Tecnologia (National and FEDER COMPETE Program funds: PTDC/SAU-OBD/099758/2008 and PTDC/SAU-BID/121459/2010 to I.P. and R.P.A., respectively) and by PEst-OE/EQB/LA0023/2011

Molecular gas and a new young stellar cluster in the far outer Galaxy

We investigate the star-formation ocurring in the region towards IRAS07527-3446 in the molecular cloud [MAB97]250.63-3.63, in the far outer Galaxy. We report the discovery of a new young stellar cluster, and describe its properties and those of its parent molecular cloud. Near-infrared JHKS images were obtained with VLT/ISAAC, and millimetre line CO spectra were obtained with the SEST telescope. VLA archive date were also used. The cloud and cluster are located at a distance of 10.3 kpc and a Galactocentric distance of 15.4 kpc, in the far outer Galaxy. Morphologically, IRAS 07527-3446 appears as a young embedded cluster of a few hundred stars seen towards the position of the IRAS source, extending for about 2-4 pc and exhibiting sub-clustering. The cluster contains low and intermediate-mass young reddened stars, a large fraction having cleared the inner regions of their circumstellar discs responsible for (H-Ks) colour excess. The observations are compatible with a < 5 Myr cluster with variable spatial extinction of between Av = 5 and Av = 11. Decomposition of CO emission in clumps, reveals a clump clearly associated with the cluster position, of mass 3.3 x 10^3 M(solar). Estimates of the slopes of the Ks-band luminosity function and of the star-formation efficiency yield values similar to those seen in nearby star-formation sites. These findings reinforce previous results that the distant outer Galaxy continues to be active in the production of new and rich stellar clusters, with the physical conditions required for the formation of rich clusters continuing to be met in the very distant environment of the outer Galactic disc.Comment: 11 pages, 13 figure

Small shrubby patches increase bird taxonomic and functional richness of wood-pastures

Wood-pastures are semi-natural systems that combine a grazed grassland with a tree layer. Shrubs are often controlled, mostly to improve grazing potential, resulting in a reduction of the available ecological niches. From a conservation perspective, it is thus important to identify management practices that counter this reduction. Our overall objective was to determine the value of small shrubby patches to increase the richness of wood-pasture bird communities. As study model we used Mediterranean oak wood-pastures in southern Portugal, locally known as montados. Birds and environmental variables were sampled in 50 m radius plots of wood-pasture with and without small shrubby patches (128–3748 m2, covering less than 0.5% of the study area), in winter (n = 54) and spring (n = 65). Species assemblages’ composition changed between seasons, but in both seasons the assemblages in plots with and without patches were statistically different. Seven species were statistically associated to the presence of patches, in winter and spring, increasing the richness of the respective assemblages. A comparison of the functional composition of communities of patches and matrix revealed that patches increased richness of landscapes by boosting the presence of species with functional traits uncommon in the ecologically simplified matrix. Their presence is promoted by resources added by the patches (e.g. nesting sites, protection, food), but the ranges of individual birds in general extended well beyond the patches. This study demonstrated that the presence of few and small shrubby patches can significantly enrich the bird communities of wood-pastures, both taxonomically and functionally, indicating that promoting them is a cost-effective management measure for these valuable systems.info:eu-repo/semantics/publishedVersio

The impact of alternative science education methodologies on the motivation and acquisition of scientific concepts

Fully aware of the increasing importance of active and experimental learning, this study has been conducted in Portugal between 2007 and 2008 and was the first of this kind to ever be conducted in this country. Thirty eight students of the school E.B. 2, 3 D. Maria II (middle school) participated in the extra-curricular activity entitled “Scientists for a Day”, previous developed by the Life and Health Science Research Institute/School of Health Science (ICVS/ECS), University of Minho. This activity realized in the School E.B. 2, 3 D. Maria II and organized by teachers of the same School consisted in a set of laboratory activities subdivided into four experimental stations, namely: 1st Station – “Extracting banana DNA”; 2nd Station – “Acid/Base”, 3rd Station – “Observation of chicken embryos” and 4th Station – “Five Senses”. The general objectives of this activity were to stimulate the pleasure of knowledge, encourage critical views, heighten the interest in science, motivate students towards experimental work and demystify the idea of what a Scientist is. In an effort to validate this activity and evaluate what they have learned, the students were asked to answer a questionnaire before and immediately after this activity. In this study we observed a clear correlation between the use of active and experimental learning activities, and an increase in scientific knowledge

Unifying low and high mass star formation through density amplified hubs of filaments

Context: Star formation takes place in giant molecular clouds, resulting in mass-segregated young stellar clusters composed of Sun-like stars, brown dwarves, and massive O-type(50-100\msun) stars. Aims: To identify candidate hub-filament systems (HFS) in the Milky-Way and examine their role in the formation of the highest mass stars and star clusters. Methods: Filaments around ~35000 HiGAL clumps that are detected using the DisPerSE algorithm. Hub is defined as a junction of three or more filaments. Column density maps were masked by the filament skeletons and averaged for HFS and non-HFS samples to compute the radial profile along the filaments into the clumps. Results: ~3700~(11\%) are candidate HFS of which, ~2150~(60\%) are pre-stellar, ~1400~(40\%) are proto-stellar. All clumps with L>10^4 Lsun and L>10^5 Lsun at distances respectively within 2kpc and 5kpc are located in the hubs of HFS. The column-densities of hubs are found to be enhanced by a factor of ~2 (pre-stellar sources) up to ~10 (proto-stellar sources). Conclusions: All high-mass stars preferentially form in the density enhanced hubs of HFS. This amplification can drive the observed longitudinal flows along filaments providing further mass accretion. Radiation pressure and feedback can escape into the inter-filamentary voids. We propose a "filaments to clusters" unified paradigm for star formation, with the following salient features: a) low-intermediate mass stars form in the filaments slowly (10^6yr) and massive stars quickly (10^5yr) in the hub, b) the initial mass function is the sum of stars continuously created in the HFS with all massive stars formed in the hub, c) Feedback dissiption and mass segregation arise naturally due to HFS properties, and c) explain age spreads within bound clusters and formation of isolated OB associations.Comment: 20 pages, 17 figures, Accepted by Astronomy and Astrophysic

Niche differences may reduce susceptibility to competition between native and non‐native birds in oceanic islands

Aim Few bird extinctions on oceanic island have been attributed to competition with non-native species, even though it might be an overlooked driver of biodiversity loss. We evaluate the potential competition between native and non-native island bird species, identifying species and island characteristics that enhance it and may promote future extinctions. Location Seventy-three (>100 km2) oceanic islands worldwide. Methods We compiled a species list for each island and used single-trait meta-analyses to assess differences between native and non-native species. Then, we used single-trait beta regression models to identify species traits linked to potential competition. Finally, we used a trait-based approach to calculate the potential competition between native and non-native species on each island and identify island characteristics linked to potential competition. Results Native bird species tended to be smaller forest dwellers, that were either carnivore, frugivore or insectivore, and that foraged in flight, in the canopy or at mid-height. In contrast, non-native birds tended to be open habitat granivores, that were either ground or unspecialized foragers. Potential competition tended to be higher for native species with typical non-native traits and forest-dwelling unspecialized non-native species. Potential competition between native and non-native birds was consistently higher in islands that were larger, had more non-native birds or were drier. Main conclusions Niche differentiation of native and non-native species may explain the scarcity of reported competition-driven extinctions since non-natives clearly tend to favour and are better adapted to anthropogenic environments. However, the few non-native birds that occur in native ecosystems may be problematic. The loss of native ecosystems coupled with the introduction of species that might outcompete native species may enhance the relevance of competition in future island extinctions.info:eu-repo/semantics/publishedVersio

How a haemosporidian parasite of bats gets around: the genetic structure of a parasite, vector and host compared.

Parasite population structure is often thought to be largely shaped by that of its host. In the case of a parasite with a complex life cycle, two host species, each with their own patterns of demography and migration, spread the parasite. However, the population structure of the parasite is predicted to resemble only that of the most vagile host species. In this study, we tested this prediction in the context of a vector-transmitted parasite. We sampled the haemosporidian parasite Polychromophilus melanipherus across its European range, together with its bat fly vector Nycteribia schmidlii and its host, the bent-winged bat Miniopterus schreibersii. Based on microsatellite analyses, the wingless vector, and not the bat host, was identified as the least structured population and should therefore be considered the most vagile host. Genetic distance matrices were compared for all three species based on a mitochondrial DNA fragment. Both host and vector populations followed an isolation-by-distance pattern across the Mediterranean, but not the parasite. Mantel tests found no correlation between the parasite and either the host or vector populations. We therefore found no support for our hypothesis; the parasite population structure matched neither vector nor host. Instead, we propose a model where the parasite's gene flow is represented by the added effects of host and vector dispersal patterns

Dynamic 3D Cell Rearrangements Guided by a Fibronectin Matrix Underlie Somitogenesis

Somites are transient segments formed in a rostro-caudal progression during vertebrate development. In chick embryos, segmentation of a new pair of somites occurs every 90 minutes and involves a mesenchyme-to-epithelium transition of cells from the presomitic mesoderm. Little is known about the cellular rearrangements involved, and, although it is known that the fibronectin extracellular matrix is required, its actual role remains elusive. Using 3D and 4D imaging of somite formation we discovered that somitogenesis consists of a complex choreography of individual cell movements. Epithelialization starts medially with the formation of a transient epithelium of cuboidal cells, followed by cell elongation and reorganization into a pseudostratified epithelium of spindle-shaped epitheloid cells. Mesenchymal cells are then recruited to this medial epithelium through accretion, a phenomenon that spreads to all sides, except the lateral side of the forming somite, which epithelializes by cell elongation and intercalation. Surprisingly, an important contribution to the somite epithelium also comes from the continuous egression of mesenchymal cells from the core into the epithelium via its apical side. Inhibition of fibronectin matrix assembly first slows down the rate, and then halts somite formation, without affecting pseudopodial activity or cell body movements. Rather, cell elongation, centripetal alignment, N-cadherin polarization and egression are impaired, showing that the fibronectin matrix plays a role in polarizing and guiding the exploratory behavior of somitic cells. To our knowledge, this is the first 4D in vivo recording of a full mesenchyme-to-epithelium transition. This approach brought new insights into this event and highlighted the importance of the extracellular matrix as a guiding cue during morphogenesis

Analysis of her1 and her7 Mutants Reveals a Spatio Temporal Separation of the Somite Clock Module

Somitogenesis is controlled by a genetic network consisting of an oscillator (clock) and a gradient (wavefront). The “hairy and Enhancer of Split”- related (her) genes act downstream of the Delta/Notch (D/N) signaling pathway, and are crucial components of the segmentation clock. Due to genome duplication events, the zebrafish genome, possesses two gene copies of the mouse Hes7 homologue: her1 and her7. To better understand the functional consequences of this gene duplication, and to determine possible independent roles for these two genes during segmentation, two zebrafish mutants her1hu2124 and her7hu2526 were analyzed. In the course of embryonic development, her1hu2124 mutants exhibit disruption of the three anterior-most somite borders, whereas her7hu2526 mutants display somite border defects restricted to somites 8 (+/−3) to 17 (+/−3) along the anterior-posterior axis. Analysis of the molecular defects in her1hu2124 mutants reveals a her1 auto regulatory feedback loop during early somitogenesis that is crucial for correct patterning and independent of her7 oscillation. This feedback loop appears to be restricted to early segmentation, as cyclic her1 expression is restored in her1hu2124 embryos at later stages of development. Moreover, only the anterior deltaC expression pattern is disrupted in the presomitic mesoderm of her1hu2124 mutants, while the posterior expression pattern of deltaC remains unaltered. Together, this data indicates the existence of an independent and genetically separable anterior and posterior deltaC clock modules in the presomitic mesdorm (PSM)

First results from the <i>Herschel</i> Gould Belt Survey in Taurus

The whole of the Taurus region (a total area of 52 deg2) has been observed by the Herschel Spectral and Photometric Imaging Receiver (SPIRE) and Photodetector Array Camera and Spectrometer (PACS) instruments at wavelengths of 70, 160, 250, 350 and 500 μm as part of the Herschel Gould Belt Survey. In this paper we present the first results from the part of the Taurus region that includes the Barnard 18 and L1536 clouds. A new source-finding routine, the Cardiff Source-finding AlgoRithm (CSAR), is introduced, which is loosely based on CLUMPFIND, but that also generates a structure tree, or dendrogram, which can be used to interpret hierarchical clump structure in a complex region. Sources were extracted from the data using the hierarchical version of CSAR and plotted on a mass-size diagram. We found a hierarchy of objects with sizes in the range 0.024-2.7 pc. Previous studies showed that gravitationally bound prestellar cores and unbound starless clumps appeared in different places on the mass-size diagram. However, it was unclear whether this was due to a lack of instrumental dynamic range or whether they were actually two distinct populations. The excellent sensitivity of Herschel shows that our sources fill the gap in the mass-size plane between starless and pre-stellar cores, and gives the first clear supporting observational evidence for the theory that unbound clumps and (gravitationally bound) prestellar cores are all part of the same population, and hence presumably part of the same evolutionary sequence