Infrared measurements of atmospheric constituents

The objective of this program is to obtain data concerning the concentration versus altitude of various constituents of interest in the photochemistry of the stratospheric ozone layer. Data pertinent to this objective are obtained using balloon-borne instruments to measure the atmospheric transmission and emission in the mid infrared. In addition to obtaining constituent profile information, the spectral data obtained are also used to identify absorption or emission features which may interfere with the retrieval of constituent data from satellite instruments using lower spectral resolution. The spectral resolution obtained with the solar spectral system is 0.0025 cm(exp -1) and represents about a factor of 5 greater resolution than any solar spectra previously obtained in this spectral region. As a result of the increase in spectral resolution, a large number of features are observed in these spectra which were not observed in previous studies. Identification and analysis of these features is in progress. The results of this analysis to date shows a number of HNO3 features which have not been observed before, and these occur where they will interfere with the retrieval of other constituents. An example of the interference is the occurrence of features in the 780.2 cm(exp -1) region which overlap the ClONO2 feature which will be used for retrieval of ClONO2 by the CLAES instrument on UARS. A number of features due to COF2 were also identified in the 1250 cm(exp -1) region which may interfere with retrieval of N2O5

The SaPPART COST Action: Towards Positioning Integrity for Road Transport

Global Navigation Satellite Systems (GNSS) is becoming one of the main components supporting Intelligent Transport Systems (ITS) and value-added services in road transport and personal mobility. The use of GNSS is expected to grow significantly due to improvements in positioning performance, with positive impacts such as: finding the optimal route; improving traffic and travel efficiency as well as safety and security; reducing congestion and optimizing fuel consumption. The deployment of mission critical applications needs high reliability in the positioning information. However, the positioning reliability is not easy to achieve because of the heterogeneous quality of the GNSS signal, which is highly influenced by the road environment and the operational scenario of the application. It is important to understand the requirements and performance GNSS can achieve for various road transport applications. This paper is presenting the SaPPART COST Action on the Satellite Positioning Performance Assessment for Road Transport. It introduces the goal and the framework of the Action with the research programme and some related activities dedicated to dissemination and supporting standardisation working groups

Resolving singular forces in cavity flow: Multiscale modeling from atoms to millimeters

A multiscale approach for fluid flow is developed that retains an atomistic description in key regions. The method is applied to a classic problem where all scales contribute: The force on a moving wall bounding a fluid-filled cavity. Continuum equations predict an infinite force due to stress singularities. Following the stress over more than six decades in length in systems with characteristic scales of millimeters and milliseconds allows us to resolve the singularities and determine the force for the first time. The speedup over pure atomistic calculations is more than fourteen orders of magnitude. We find a universal dependence on the macroscopic Reynolds number, and large atomistic effects that depend on wall velocity and interactions.Comment: 4 pages,3 figure

Traveling Wave Fronts and Localized Traveling Wave Convection in Binary Fluid Mixtures

Nonlinear fronts between spatially extended traveling wave convection (TW) and quiescent fluid and spatially localized traveling waves (LTWs) are investigated in quantitative detail in the bistable regime of binary fluid mixtures heated from below. A finite-difference method is used to solve the full hydrodynamic field equations in a vertical cross section of the layer perpendicular to the convection roll axes. Results are presented for ethanol-water parameters with several strongly negative separation ratios where TW solutions bifurcate subcritically. Fronts and LTWs are compared with each other and similarities and differences are elucidated. Phase propagation out of the quiescent fluid into the convective structure entails a unique selection of the latter while fronts and interfaces where the phase moves into the quiescent state behave differently. Interpretations of various experimental observations are suggested.Comment: 46 pages, 11 figures. Accepted for publication in Phys. Rev.

Bromine in the tropical troposphere and stratosphere as derived from balloon-borne BrO observations

The first tropospheric and stratospheric (4 to 33 km) BrO profile is presented for the inner tropics derived from balloon-borne DOAS (Differential Optical Absorption Spectroscopy) measurements. In combination with photochemical modelling, total stratospheric inorganic bromine (Br<sub>y</sub>) is deduced to be (21.5±2.5) ppt in 4.5-year-old air, probed in 2005. We derive a total contribution of (5.2±2.5) ppt from brominated very short-lived substances and inorganic product gases to stratospheric Br<sub>y</sub> Tropospheric BrO was found to be <1 ppt. Our results are compared to two 3-D CTM SLIMCAT model runs, which differ in the lifetime of the bromine source gases, affecting the vertical distribution of Br<sub>y</sub> in the lower stratosphere. Bromine source gas measurements performed 10 days earlier Laube et al., 2008, indicate a lower Br<sub>y</sub> of (17.5±0.4) ppt. Potential reasons for this discrepancy are discussed

The effects of mismatches on hybridization in DNA microarrays: determination of nearest neighbor parameters

Quantifying interactions in DNA microarrays is of central importance for a better understanding of their functioning. Hybridization thermodynamics for nucleic acid strands in aqueous solution can be described by the so-called nearest-neighbor model, which estimates the hybridization free energy of a given sequence as a sum of dinucleotide terms. Compared with its solution counterparts, hybridization in DNA microarrays may be hindered due to the presence of a solid surface and of a high density of DNA strands. We present here a study aimed at the determination of hybridization free energies in DNA microarrays. Experiments are performed on custom Agilent slides. The solution contains a single oligonucleotide. The microarray contains spots with a perfect matching complementary sequence and other spots with one or two mismatches: in total 1006 different probe spots, each replicated 15 times per microarray. The free energy parameters are directly fitted from microarray data. The experiments demonstrate a clear correlation between hybridization free energies in the microarray and in solution. The experiments are fully consistent with the Langmuir model at low intensities, but show a clear deviation at intermediate (non-saturating) intensities. These results provide new interesting insights for the quantification of molecular interactions in DNA microarrays.Comment: 31 pages, 5 figure

GoArrays: highly dynamic and efficient microarray probe design

MOTIVATION: The use of oligonucleotide microarray technology requires a very detailed attention to the design of specific probes spotted on the solid phase. These problems are far from being commonplace since they refer to complex physicochemical constraints. Whereas there are more and more publicly available programs for microarray oligonucleotide design, most of them use the same algorithm or criteria to design oligos, with only little variation. RESULTS: We show that classical approaches used in oligo design software may be inefficient under certain experimental conditions, especially when dealing with complex target mixtures. Indeed, our biological model is a human obligate parasite, the microsporidia Encephalitozoon cuniculi. Targets that are extracted from biological samples are composed of a mixture of pathogen transcripts and host cell transcripts. We propose a new approach to design oligonucleotides which combines good specificity with a potentially high sensitivity. This approach is original in the biological point of view as well as in the algorithmic point of view. We also present an experimental validation of this new strategy by comparing results obtained with standard oligos and with our composite oligos. A specific E.cuniculi microarray will overcome the difficulty to discriminate the parasite mRNAs from the host cell mRNAs demonstrating the power of the microarray approach to elucidate the lifestyle of an intracellular pathogen using mix mRNAs

Friction Drag on a Particle Moving in a Nematic Liquid Crystal

The flow of a liquid crystal around a particle does not only depend on its shape and the viscosity coefficients but also on the direction of the molecules. We studied the resulting drag force on a sphere moving in a nematic liquid crystal (MBBA) in a low Reynold's number approach for a fixed director field (low Ericksen number regime) using the computational artificial compressibility method. Taking the necessary disclination loop around the sphere into account, the value of the drag force anisotropy (F_\perp/F_\parallel=1.50) for an exactly computed field is in good agreement with experiments (~1.5) done by conductivity diffusion measurements. We also present data for weak anchoring of the molecules on the particle surface and of trial fields, which show to be sufficiently good for most applications. Furthermore, the behaviour of the friction close to the transition point nematic isotropic and for a rod-like and a disc-like liquid crystal will be given.Comment: 23 pages RevTeX, including 3 PS figures, 1 PS table and 1 PS-LaTeX figure; Accepted for publication in Phys. Rev.

Vortex disruption by magnetohydrodynamic feedback

In an electrically conducting fluid, vortices stretch out a weak, large-scale magnetic field to form strong current sheets on their edges. Associated with these current sheets are magnetic stresses, which are subsequently released through reconnection, leading to vortex disruption, and possibly even destruction. This disruption phenomenon is investigated here in the context of two-dimensional, homogeneous, incompressible magnetohydrodynamics. We derive a simple order of magnitude estimate for the magnetic stresses—and thus the degree of disruption—that depends on the strength of the background magnetic field (measured by the parameter M, a ratio between the Alfvén speed and a typical flow speed) and on the magnetic diffusivity (measured by the magnetic Reynolds number Rm). The resulting estimate suggests that significant disruption occurs when M²Rm=O(1). To test our prediction, we analyze direct numerical simulations of vortices generated by the breakup of unstable shear flows with an initially weak background magnetic field. Using the Okubo-Weiss vortex coherence criterion, we introduce a vortex disruption measure, and show that it is consistent with our predicted scaling, for vortices generated by instabilities of both a shear layer and a jet