An Experimental Approach for the Determination of the Mechanical Properties of Base-Excited Polymeric Specimens at Higher Frequency Modes

Structures made of the thermoplastic polymer polyether ether ketone (PEEK) are widely used in dynamically-loaded applications due to their high-temperature resistance and high mechanical properties. To design these dynamic applications, in addition to the well-known stiffness and strength properties the vibration-damping properties at the given frequencies are required. Depending on the application, frequencies from a few hertz to the ultrasonic range are of interest here. To characterize the frequency-dependent behavior, an experimental approach was chosen and applied to a sample polymer PEEK. The test setup consists of a piezoelectrically driven base excitation of the polymeric specimen and the non-contact measurement of the velocity as well as the surface temperature. The beam’s bending vibrations were analyzed by means of the Timoshenko theory to determine the polymer’s storage modulus. The mechanical loss factor was calculated using the half-power bandwidth method. For PEEK and a considered frequency range of 1 kHz to 16 kHz, a storage modulus between 3.9 GPa and 4.2 GPa and a loss factor between 9 103 and 17 103 were determined. For the used experimental parameters, the resulting mechanical properties were not essentially influenced by the amplitude of excitation, the duration of excitation, or thermal degrad.ation due to self-heating, but rather slightly by the clamping force within the fixation area

The complete genome sequence of a Neandertal from the Altai Mountains

We present a high-quality genome sequence of a Neandertal woman from Siberia. We show that her parents were related at the level of half siblings and that mating among close relatives was common among her recent ancestors. We also sequenced the genome of a Neandertal from the Caucasus to low coverage. An analysis of the relationships and population history of available archaic genomes and 25 present-day human genomes shows that several gene flow events occurred among Neandertals, Denisovans and early modern humans, possibly including gene flow into Denisovans from an unknown archaic group. Thus, interbreeding, albeit of low magnitude, occurred among many hominin groups in the Late Pleistocene. In addition, the high quality Neandertal genome allows us to establish a definitive list of substitutions that became fixed in modern humans after their separation from the ancestors of Neandertals and Denisovans

Annotation of primate miRNAs by high throughput sequencing of small RNA libraries

BACKGROUND: In addition to genome sequencing, accurate functional annotation of genomes is required in order to carry out comparative and evolutionary analyses between species. Among primates, the human genome is the most extensively annotated. Human miRNA gene annotation is based on multiple lines of evidence including evidence for expression as well as prediction of the characteristic hairpin structure. In contrast, most miRNA genes in non-human primates are annotated based on homology without any expression evidence. We have sequenced small-RNA libraries from chimpanzee, gorilla, orangutan and rhesus macaque from multiple individuals and tissues. Using patterns of miRNA expression in conjunction with a model of miRNA biogenesis we used these high-throughput sequencing data to identify novel miRNAs in non-human primates. RESULTS: We predicted 47 new miRNAs in chimpanzee, 240 in gorilla, 55 in orangutan and 47 in rhesus macaque. The algorithm we used was able to predict 64% of the previously known miRNAs in chimpanzee, 94% in gorilla, 61% in orangutan and 71% in rhesus macaque. We therefore added evidence for expression in between one and five tissues to miRNAs that were previously annotated based only on homology to human miRNAs. We increased from 60 to 175 the number miRNAs that are located in orthologous regions in humans and the four non-human primate species studied here. CONCLUSIONS: In this study we provide expression evidence for homology-based annotated miRNAs and predict de novo miRNAs in four non-human primate species. We increased the number of annotated miRNA genes and provided evidence for their expression in four non-human primates. Similar approaches using different individuals and tissues would improve annotation in non-human primates and allow for further comparative studies in the future

PatMaN: rapid alignment of short sequences to large databases

Summary: We present a tool suited for searching for many short nucleotide sequences in large databases, allowing for a predefined number of gaps and mismatches. The commandline-driven program implements a non-deterministic automata matching algorithm on a keyword tree of the search strings. Both queries with and without ambiguity codes can be searched. Search time is short for perfect matches, and retrieval time rises exponentially with the number of edits allowed

A Neanderthal Sodium Channel Increases Pain Sensitivity in Present-Day Humans.

The sodium channel Nav1.7 is crucial for impulse generation and conduction in peripheral pain pathways [1]. In Neanderthals, the Nav1.7 protein carried three amino acid substitutions (M932L, V991L, and D1908G) relative to modern humans. We expressed Nav1.7 proteins carrying all combinations of these substitutions and studied their electrophysiological effects. Whereas the single amino acid substitutions do not affect the function of the ion channel, the full Neanderthal variant carrying all three substitutions, as well as the combination of V991L with D1908G, shows reduced inactivation, suggesting that peripheral nerves were more sensitive to painful stimuli in Neanderthals than in modern humans. We show that, due to gene flow from Neanderthals, the three Neanderthal substitutions are found in ∼0.4% of present-day Britons, where they are associated with heightened pain sensitivity

Transcription Factors Are Targeted by Differentially Expressed miRNAs in Primates

MicroRNAs (miRNAs) are small RNA molecules involved in the regulation of mammalian gene expression. Together with other transcription regulators, miRNAs modulate the expression of genes and thereby potentially contribute to tissue and species diversity. To identify miRNAs that are differentially expressed between tissues and/or species, and the genes regulated by these, we have quantified expression of miRNAs and messenger RNAs in five tissues from multiple human, chimpanzee, and rhesus macaque individuals using high-throughput sequencing. The breadth of this tissue and species data allows us to show that downregulation of target genes by miRNAs is more pronounced between tissues than between species and that downregulation is more pronounced for genes with fewer binding sites for expressed miRNAs. Intriguingly, we find that tissue- and species-specific miRNAs target transcription factor genes (TFs) significantly more often than expected. Through their regulatory effect on transcription factors, miRNAs may therefore exert an indirect influence on a larger proportion of genes than previously thought

Statistical tests for associations between two directed acyclic graphs.

Biological data, and particularly annotation data, are increasingly being represented in directed acyclic graphs (DAGs). However, while relevant biological information is implicit in the links between multiple domains, annotations from these different domains are usually represented in distinct, unconnected DAGs, making links between the domains represented difficult to determine. We develop a novel family of general statistical tests for the discovery of strong associations between two directed acyclic graphs. Our method takes the topology of the input graphs and the specificity and relevance of associations between nodes into consideration. We apply our method to the extraction of associations between biomedical ontologies in an extensive use-case. Through a manual and an automatic evaluation, we show that our tests discover biologically relevant relations. The suite of statistical tests we develop for this purpose is implemented and freely available for download

Disentangling Immediate Adaptive Introgression from Selection on Standing Introgressed Variation in Humans.

Recent studies have reported evidence suggesting that portions of contemporary human genomes introgressed from archaic hominin populations went to high frequencies due to positive selection. However, no study to date has specifically addressed the postintrogression population dynamics of these putative cases of adaptive introgression. Here, for the first time, we specifically define cases of immediate adaptive introgression (iAI) in which archaic haplotypes rose to high frequencies in humans as a result of a selective sweep that occurred shortly after the introgression event. We define these cases as distinct from instances of selection on standing introgressed variation (SI), in which an introgressed haplotype initially segregated neutrally and subsequently underwent positive selection. Using a geographically diverse data set, we report novel cases of selection on introgressed variation in living humans and shortlist among these cases those whose selective sweeps are more consistent with having been the product of iAI rather than SI. Many of these novel inferred iAI haplotypes have potential biological relevance, including three that contain immune-related genes in West Siberians, South Asians, and West Eurasians. Overall, our results suggest that iAI may not represent the full picture of positive selection on archaically introgressed haplotypes in humans and that more work needs to be done to analyze the role of SI in the archaic introgression landscape of living humans

Technology-Driven Design of a Scalable Small Satellite Platform

This paper presents a new approach in satellite platform design. While traditionally the design of technology demonstration- or scientific missions is driven by the requirements of the payload, the focus of our approach lies on using avionics technologies developed by the German Aerospace Center (DLR) as the core components of the satellite bus. These components will then drive the design of the Small Satellite Technology Platform, in short S2TEP. This methodology change towards a technology-driven approach results from the long-term goals identified for future in-house space missions, as there are a cost effective platform design, a shorter development time, short-term design adaptions and the ability to carry out own research and development activities which lead to a deeper design understanding. The accomplishment of these goals also requires a change within the satellite's model philosophy, a new development process and a flexible and highly autonomous ground segment. The first instantiation of the S2TEP platform will be a satellite in the micro-satellite class. During this project the needed avionics technologies will be further developed up to a Technology Readiness Level (TRL) mature enough to be integrated in the flight model for the first mission. By separating mission- and bus-development it is ensured that the payload does not influence the bus design too much. Though, a reference mission will be designed to set an interface to and an envelope for possible payloads. The DLR avionics technologies to be used for the S2TEP core avionics consist of the Onboard Computer (OBC), the Power Condition and Distribution Unit (PCDU) and the Transceiver-unit. All of these components are designed taking scalability into account - concentrating not only on performance parameters but also on quality aspects, like the migration path for all used electronic parts towards space qualification. Taking the OBC as an example, the scalability up to the next higher class of satellites will be presented within this paper