Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes

<p>Abstract</p> <p>Background</p> <p>Comparative genomics has emerged as a promising means of unravelling the molecular networks underlying complex traits such as drought tolerance. Here we assess the genotype-dependent component of the drought-induced transcriptome response in two poplar genotypes differing in drought tolerance. Drought-induced responses were analysed in leaves and root apices and were compared with available transcriptome data from other <it>Populus </it>species.</p> <p>Results</p> <p>Using a multi-species designed microarray, a genomic DNA-based selection of probesets provided an unambiguous between-genotype comparison. Analyses of functional group enrichment enabled the extraction of processes physiologically relevant to drought response. The drought-driven changes in gene expression occurring in root apices were consistent across treatments and genotypes. For mature leaves, the transcriptome response varied weakly but in accordance with the duration of water deficit. A differential clustering algorithm revealed similar and divergent gene co-expression patterns among the two genotypes. Since moderate stress levels induced similar physiological responses in both genotypes, the genotype-dependent transcriptional responses could be considered as intrinsic divergences in genome functioning. Our meta-analysis detected several candidate genes and processes that are differentially regulated in root and leaf, potentially under developmental control, and preferentially involved in early and long-term responses to drought.</p> <p>Conclusions</p> <p>In poplar, the well-known drought-induced activation of sensing and signalling cascades was specific to the early response in leaves but was found to be general in root apices. Comparing our results to what is known in arabidopsis, we found that transcriptional remodelling included signalling and a response to energy deficit in roots in parallel with transcriptional indices of hampered assimilation in leaves, particularly in the drought-sensitive poplar genotype.</p

A study of the nanostructure and hardness of electron beam evaporated TiAlBN Coatings

TiAlBN coatings have been deposited by electron beam (EB) evaporation from a single TiAlBN material source onto AISI 316 stainless steel substrates at a temperature of 450 °C and substrate bias of − 100 V. The stoichiometry and nanostructure have been studied by X-ray photoelectron spectroscopy, X-ray diffraction and transmission electron microscopy. The hardness and elastic modulus were determined by nanoindentation. Five coatings have been deposited, three from hot-pressed TiAlBN material and two from hot isostatically pressed (HIPped) material. The coatings deposited from the hot-pressed material exhibited a nanocomposite nc-(Ti,Al)N/a-BN/a-(Ti,Al)B2 structure, the relative phase fraction being consistent with that predicted by the equilibrium Ti–B–N phase diagram. Nanoindentation hardness values were in the range of 22 to 32 GPa. Using the HIPped material, coating (Ti,Al)B0.29N0.46 was found to have a phase composition of 72–79 mol.% nc-(Ti,Al)(N,B)1 − x+ 21–28 mol.% amorphous titanium boride and a hardness of 32 GPa. The second coating, (Ti,Al)B0.66N0.25, was X-ray amorphous with a nitride+boride multiphase composition and a hardness of 26 GPa. The nanostructure and structure–property relationships of all coatings are discussed in detail. Comparisons are made between the single-EB coatings deposited in this work and previously deposited twin-EB coatings. Twin-EB deposition gives rise to lower adatom mobilities, leading to (111) (Ti,Al)N preferential orientation, smaller grain sizes, less dense coatings and lower hardnesses

Global and local deformation behavior and mechanical properties of individual phases in a quenched and partitioned steel

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Solid solution and precipitation strengthening effects in basal slip, extension twinning and pyramidal slip in Mg-Zn alloys

A high-throughput methodology is proposed, based on the combination of diffusion couples and ad-vanced nanomechanical testing methods, to directly measure alloying effects on the critical resolved shear stress (CRSS) of individual deformation modes in Mg alloys. The methodology is tested in Mg-Zn alloys by assessing the alloying effects, up to Zn contents of 2 at.%, on basal slip, extension twining and pyramidal slip in two metallurgical conditions: as-quenched, for which the Zn solute atoms remain homogenously dispersed in solid solution; and peak-aged, for which the Zn atoms form rod-shape beta(1)' (MgZn2) pre-cipitates. A combined approach including micromechanical testing, transmission Kikuchi diffraction, and high-resolution transmission electron microscopy was performed to reveal the corresponding deformation mechanisms. It was found that the CRSS enhancement for basal slip and extension twinning by MgZn2 precipitates is considerably larger than the effect of Zn in solid solution, while the strengthening of pyra-midal slip is similar in both cases. As a result, the anisotropy ratios remain high and similar to pure Mg in the solid solution strengthened Mg-Zn alloys. However, they are substantially reduced in precipitation strengthened Mg-Zn alloys. (C) 2021 Acta Materialia Inc. Published by Elsevier Ltd. All rights reserved

The use of the PeakForceTM quantitative nanomechanical mapping AFM-based method for high-resolution Young's modulus measurement of polymers

PeakForceTM quantitative nanomechanical mapping (QNMTM) is a new atomic force microscopy technique for measuring Young's modulus of materials with high spatial resolution and surface sensitivity by probing at the nanoscale. In this work, modulus results from PeakForce™ QNM™ using three different probes are presented for a number of different polymers with a range of Young's moduli that were measured independently by instrumented (nano) indentation testing (IIT). The results from the diamond and silicon AFM probes were consistent and in reasonable agreement with IIT values for the majority of samples. It is concluded that the technique is complementary to IIT; calibration requirements and potential improvements to the technique are discussed

Toward improved drought tolerance in bioenergy crops: QTL for carbon isotope composition and stomatal conductance in Populus

Dedicated non-food bioenergy crops like poplar are needed as sustainable, low-input feedstocks for renewable energy in a future drier climate, where they can be grown on marginal soils. Such plants should have a low water, carbon, and chemical footprint. Capturing natural variation in traits associated with water use efficiency (WUE) is the first step to developing trees that require less water and may be adapted to drier environments. We have assessed stomatal conductance (gs) and leaf carbon isotope composition (?13C, an indirect indicator of leaf WUE) in two Populus species, P. deltoides and P. trichocarpa and their F2 progeny, grown in the United Kingdom and in Italy. Populus deltoides leaves showed lower ?13C than P. trichocarpa, suggesting a higher WUE in P. trichocarpa, although without drought preconditioning, gs of P. trichocarpa was less responsive to dehydration and abscisic acid treatment than P. deltoides, suggesting that leaf anatomy may also contribute to ?13C in Populus. Quantitative trait loci (QTL) were identified for ?13C on eight linkage groups (LG) and two QTL for gs. From these. QTL and differential gene expression in response to drought from microarray data, we focused on three hotspots and identified 23 novel candidate genes on LG VI, X, and XVI. We have begun to unravel the genetic basis of WUE in bioenergy Populus revealing important underpinning data for breeding and improvement in poplar genotypes for a future drier climat

The use of the PeakForceTM quantitative nanomechanical mapping AFM-based method for high-resolution Young's modulus measurement of polymers

PeakForceTM quantitative nanomechanical mapping (QNMTM) is a new atomic force microscopy technique for measuring Young's modulus of materials with high spatial resolution and surface sensitivity by probing at the nanoscale. In this work, modulus results from PeakForce™ QNM™ using three different probes are presented for a number of different polymers with a range of Young's moduli that were measured independently by instrumented (nano) indentation testing (IIT). The results from the diamond and silicon AFM probes were consistent and in reasonable agreement with IIT values for the majority of samples. It is concluded that the technique is complementary to IIT; calibration requirements and potential improvements to the technique are discussed

Full blood count values as a predictor of poor outcome of pneumonia among HIV-infected patients

Background To evaluate the predictive value of analytical markers of full blood count that can be assessed in the emergency department for HIV infected patients, with community-acquired pneumonia (CAP). Methods Prospective 3-year study including all HIV-infected patients that went to our emergency department with respiratory clinical infection, more than 24-h earlier they were diagnosed with CAP and required admission. We assessed the different values of the first blood count performed on the patient as follows; total white blood cells (WBC), neutrophils, lymphocytes (LYM), basophils, eosinophils (EOS), red blood cells (RBC), hemoglobin, hematocrit, mean corpuscular volume, mean corpuscular hemoglobin concentration, mean corpuscular hemoglobin, red blood cell distribution width (RDW), platelets (PLT), mean platelet volume, and platelet distribution width (PDW). The primary outcome measure was 30-day mortality and the secondary, admission to an intensive care unit (ICU). The predictive power of the variables was determined by statistical calculation. Results One hundred sixty HIV-infected patients with pneumonia were identified. The mean age was 42 (11) years, 99 (62%) were male, 79 (49%) had ART. The main route of HIV transmission was through parenteral administration of drugs. Streptococcus pneumonia was the most frequently identified etiologic agent of CAP The univariate analysis showed that the values of PLT (p < 0.009), EOS (p < 0.033), RDW (p < 0.033) and PDW (p < 0.09) were predictor of mortality, but after the logistic regression analysis, no variable was shown as an independent predictor of mortality. On the other hand, higher RDW (OR = 1.2, 95% CI 1.1-1.4, p = 0.013) and a lower number of LYM (OR 2.2, 95% CI 1.1-2.2; p = 0.035) were revealed as independent predictors of admission to ICU. Conclusion Red blood cell distribution and lymphocytes were the most useful predictors of disease severity identifying HIV infected patients with CAP who required ICU admission. Electronic supplementary material The online version of this article (10.1186/s12879-018-3090-0) contains supplementary material, which is available to authorized users